Rorug05G0537300

nucleobase-ascorbate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0007574
Physical Location & Seq
Reverse (-)
72591866 .. 72592780
915 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0537300.1

Sequence Viewer

Length: 915 bp
ATGGCGAAGGATGAGACTGACTGGTCGTCTTGGGTTCACCTCAATGTCGGAGGAAAAAAATTCTGCACTACTATTGATACTCTCACTCAACGCGAGCCTGAATCCATGCTTGCTGCAATGTTTAGCGGTCGTCATACTTTAAGGAAAGACAAGGGGTATGTTTTGATTGACAGAGATGGTGATTATTTTGGGTATGTCCTTAATTGGTTACGAGATGGTGATGTTCCTACTTTAGACGCTCGTACACACTACCAACTTCTGAAAGAGGCAGAATACTTTCAACTACTTGGTTTGATAGATAGAATAAACATAAGTGCTGATTTAACACGTAGTGATGTCATAAAATGTATCCAATCAAAACAGAAAACGTTTCGAGGTGTAAATCTTTCTGGCCTTGATCTGTCAAAACTGGACTTGACAGGTATAAACTTCAGTTATGCATGTCTGCGCAATGTGTCATTCCTAGGTGCAGACCTTGCAGGTTCTAGGTTTAACAATGCTGATGCTCGGGGTGCCATCTTTAGTTATTTAGTTTTGAAAGGAAGCGTATTTACTGGGGCAAAACTTGATGGAGCTAATTTTACAGGTGCAAATCTTCATAGAGCTAATTTGAATGGTGCCACTCTCTCACGAGCTGATTTTACAAATGCTAATCTTGAAGCTGCTAGTTTACGCGTAGATGCTGTGGATTCCACCTTTAGTTCGGCTACTTGTCGATTTTGTGAGTTCACTGGGGCCAACTTGCTTGGAGTATCATTTGCTGGCGCTGACTTATATGCTGCGAGTCTGAAAGGAGCATGTTTGAAAAATTGTATATTCCGCAAGGCCAACTTGAGACTTGCAAATCTAGATGATGCAGATCTTACAAATGCCGATATTGGGGGGGGGGGGGGGGGGGGGGGGGTGGGCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Xan_ur_permease

Protein Analysis

304

Amino Acids

32.81

Weight (kDa)

6.89

Isoelectric Point (pI)

20.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB_2 PF02214 12 - 98 5e-17 BTB/POZ domain
Pentapeptide_4 PF13599 107 - 184 4.4e-06 Pentapeptide repeat region
Pentapeptide PF00805 138 - 175 1.3e-07 Pentapeptide repeats (8 copies)
Pentapeptide_4 PF13599 158 - 224 1e-07 Pentapeptide repeat region
Pentapeptide PF00805 179 - 216 1e-11 Pentapeptide repeats (8 copies)
Pentapeptide_4 PF13599 183 - 253 1.3e-06 Pentapeptide repeat region
Pentapeptide_3 PF13576 184 - 222 2.2e-06 Pentapeptide repeats (9 copies)
Pentapeptide PF00805 192 - 225 4.1e-09 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 238 - 274 4.6e-08 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 261 - 292 2.4e-06 Pentapeptide repeats (8 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 22
Acc16I TGCGCA 1 cut(s) 449
Acc36I ACCTGC 1 cut(s) 470
AccB1I GGYRCC 2 cut(s) 512, 617
AccII CGCG 2 cut(s) 93, 675
AciI CCGC 2 cut(s) 126, 820
AclI AACGTT 1 cut(s) 368
AcsI RAATTY 1 cut(s) 59
AcuI CTGAAG 1 cut(s) 415
AdeI CACNNNGTG 1 cut(s) 332
AfaI GTAC 1 cut(s) 244
AfiI CCNNNNNNNGG 1 cut(s) 879
AflIII ACRYGT 2 cut(s) 326, 673
AgsI TTSAA 5 cut(s) 281, 538, 613, 659, 805
AhdI GACNNNNNGTC 1 cut(s) 25
AluBI AGCT 4 cut(s) 575, 605, 635, 662
AluI AGCT 4 cut(s) 575, 605, 635, 662
Alw26I GTCTC 2 cut(s) 8, 829
Ama87I CYCGRG 1 cut(s) 507
AoxI GGCC 3 cut(s) 391, 735, 825
ApeKI GCWGC 3 cut(s) 113, 662, 779
ApoI RAATTY 1 cut(s) 59
Asp700I GAANNNNTTC 1 cut(s) 276
AspA2I CCTAGG 1 cut(s) 463
AspLEI GCGC 2 cut(s) 450, 767
AspS9I GGNCC 1 cut(s) 735
AsuHPI GGTGA 3 cut(s) 29, 191, 230
AvaI CYCGRG 1 cut(s) 507
AvrII CCTAGG 1 cut(s) 463
BanI GGYRCC 2 cut(s) 512, 617
BarI GAAGNNNNNNTAC 2 cut(s) 535, 567
BauI CACGAG 1 cut(s) 630
BbvI GCAGC 3 cut(s) 100, 649, 766
BccI CCATC 4 cut(s) 170, 209, 524, 563
BciVI GTATCC 1 cut(s) 359
BcoDI GTCTC 2 cut(s) 8, 829
BfaI CTAG 4 cut(s) 464, 486, 666, 848
BfoI RGCGCY 1 cut(s) 768
BfuAI ACCTGC 1 cut(s) 470
BfuI GTATCC 1 cut(s) 359
BglII AGATCT 1 cut(s) 859
BisI GCNGC 3 cut(s) 114, 663, 780
BlnI CCTAGG 1 cut(s) 463
BlsI GCNGC 3 cut(s) 115, 664, 781
BmeRI GACNNNNNGTC 1 cut(s) 25
BmeT110I CYCGRG 1 cut(s) 507
BmgT120I GGNCC 1 cut(s) 735
BmiI GGNNCC 3 cut(s) 514, 619, 736
BmrI ACTGGG 2 cut(s) 564, 741
BmsI GCATC 3 cut(s) 493, 670, 844
BmuI ACTGGG 2 cut(s) 564, 741
BpuEI CTTGAG 1 cut(s) 853
BsaAI YACGTR 1 cut(s) 329
BsaBI GATNNNNATC 1 cut(s) 858
BsaJI CCNNGG 1 cut(s) 463
Bsc4I CCNNNNNNNGG 1 cut(s) 879
Bse1I ACTGG 4 cut(s) 26, 414, 559, 736
Bse3DI GCAATG 2 cut(s) 123, 457
Bse8I GATNNNNATC 1 cut(s) 858
BseDI CCNNGG 1 cut(s) 463
BseGI GGATG 1 cut(s) 16
BseJI GATNNNNATC 1 cut(s) 858
BseLI CCNNNNNNNGG 1 cut(s) 879
BseMI GCAATG 2 cut(s) 123, 457
BseNI ACTGG 4 cut(s) 26, 414, 559, 736
BseXI GCAGC 3 cut(s) 100, 649, 766
BsgI GTGCAG 2 cut(s) 49, 489
Bsh1236I CGCG 2 cut(s) 93, 675
Bsh1285I CGRYCG 1 cut(s) 130
BshFI GGCC 3 cut(s) 393, 737, 827
BshNI GGYRCC 2 cut(s) 512, 617
BsiEI CGRYCG 1 cut(s) 130
BsiHKCI CYCGRG 1 cut(s) 507
BslI CCNNNNNNNGG 1 cut(s) 879
BsmAI GTCTC 2 cut(s) 8, 829
BsnI GGCC 3 cut(s) 393, 737, 827
BsoBI CYCGRG 1 cut(s) 507
Bsp143I GATC 2 cut(s) 397, 859
BspACI CCGC 2 cut(s) 126, 820
BspANI GGCC 3 cut(s) 393, 737, 827
BspFNI CGCG 2 cut(s) 93, 675
BspLI GGNNCC 3 cut(s) 514, 619, 736
BspMI ACCTGC 1 cut(s) 470
BspT107I GGYRCC 2 cut(s) 512, 617
BsrDI GCAATG 2 cut(s) 123, 457
BsrI ACTGG 4 cut(s) 26, 414, 559, 736
BssECI CCNNGG 1 cut(s) 463
BssMI GATC 2 cut(s) 397, 859
BssSI CACGAG 1 cut(s) 630
BssT1I CCWWGG 1 cut(s) 463
Bst2BI CACGAG 1 cut(s) 630
BstAPI GCANNNNNTGC 1 cut(s) 476
BstBAI YACGTR 1 cut(s) 329
BstC8I GCNNGC 3 cut(s) 95, 111, 763
BstF5I GGATG 1 cut(s) 16
BstFNI CGCG 2 cut(s) 93, 675
BstH2I RGCGCY 1 cut(s) 768
BstHHI GCGC 2 cut(s) 450, 767
BstKTI GATC 2 cut(s) 400, 862
BstMAI GTCTC 2 cut(s) 8, 829
BstMBI GATC 2 cut(s) 397, 859
BstMCI CGRYCG 1 cut(s) 130
BstMWI GCNNNNNNNGC 2 cut(s) 476, 512
BstNSI RCATGY 2 cut(s) 444, 801
BstUI CGCG 2 cut(s) 93, 675
BstV1I GCAGC 3 cut(s) 100, 649, 766
BstX2I RGATCY 1 cut(s) 859
BstYI RGATCY 1 cut(s) 859
BsuI GTATCC 1 cut(s) 359
BsuRI GGCC 3 cut(s) 393, 737, 827
BtsCI GGATG 1 cut(s) 16
BtsIMutI CAGTG 1 cut(s) 729
BveI ACCTGC 1 cut(s) 470
Cac8I GCNNGC 3 cut(s) 95, 111, 763
CfoI GCGC 2 cut(s) 450, 767
Cfr13I GGNCC 1 cut(s) 735
CseI GACGC 1 cut(s) 245
Csp6I GTAC 1 cut(s) 243
CviAII CATG 3 cut(s) 106, 441, 798
CviQI GTAC 1 cut(s) 243
DpnI GATC 2 cut(s) 399, 861
DpnII GATC 2 cut(s) 397, 859
DraIII CACNNNGTG 1 cut(s) 332
DrdI GACNNNNNNGTC 1 cut(s) 22
DriI GACNNNNNGTC 1 cut(s) 25
DseDI GACNNNNNNGTC 1 cut(s) 22
Eam1105I GACNNNNNGTC 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 463
Eco57I CTGAAG 1 cut(s) 415
Eco88I CYCGRG 1 cut(s) 507
EcoT14I CCWWGG 1 cut(s) 463
EcoT22I ATGCAT 1 cut(s) 442
ErhI CCWWGG 1 cut(s) 463
FaeI CATG 3 cut(s) 109, 444, 801
FalI AAGNNNNNCTT 2 cut(s) 815, 847
FatI CATG 3 cut(s) 105, 440, 797
Fnu4HI GCNGC 3 cut(s) 114, 663, 780
FokI GGATG 1 cut(s) 23
Fsp4HI GCNGC 3 cut(s) 114, 663, 780
FspBI CTAG 4 cut(s) 464, 486, 666, 848
FspI TGCGCA 1 cut(s) 449
GlaI GCGC 2 cut(s) 449, 766
GluI GCNGC 3 cut(s) 114, 663, 780
HaeII RGCGCY 1 cut(s) 768
HaeIII GGCC 3 cut(s) 393, 737, 827
HgaI GACGC 1 cut(s) 245
HhaI GCGC 2 cut(s) 450, 767
Hin1II CATG 3 cut(s) 109, 444, 801
Hin6I GCGC 2 cut(s) 448, 765
HinP1I GCGC 2 cut(s) 448, 765
HinfI GANTC 3 cut(s) 101, 689, 784
HphI GGTGA 3 cut(s) 29, 191, 230
Hpy166II GTNNAC 4 cut(s) 37, 245, 671, 729
Hpy188I TCNGA 3 cut(s) 50, 261, 789
Hpy188III TCNNGA 3 cut(s) 630, 656, 848
Hpy8I GTNNAC 4 cut(s) 37, 245, 671, 729
HpyCH4IV ACGT 2 cut(s) 328, 368
HpyCH4V TGCA 8 cut(s) 66, 116, 440, 470, 479, 590, 842, 857
HpyF10VI GCNNNNNNNGC 2 cut(s) 476, 512
HpySE526I ACGT 2 cut(s) 328, 368
Hsp92II CATG 3 cut(s) 109, 444, 801
HspAI GCGC 2 cut(s) 448, 765
Kzo9I GATC 2 cut(s) 397, 859
LmnI GCTCC 2 cut(s) 572, 794
Lsp1109I GCAGC 3 cut(s) 100, 649, 766
LweI GCATC 3 cut(s) 493, 670, 844
MaeI CTAG 4 cut(s) 464, 486, 666, 848
MaeII ACGT 2 cut(s) 328, 368
MaeIII GTNAC 1 cut(s) 207
MalI GATC 2 cut(s) 399, 861
MboI GATC 2 cut(s) 397, 859
MboII GAAGA 1 cut(s) 587
MflI RGATCY 1 cut(s) 859
MluCI AATT 5 cut(s) 59, 202, 577, 607, 808
MluI ACGCGT 1 cut(s) 673
MlyI GAGTC 1 cut(s) 793
MmeI TCCRAC 1 cut(s) 28
MnlI CCTC 4 cut(s) 44, 50, 259, 368
Mph1103I ATGCAT 1 cut(s) 442
MroXI GAANNNNTTC 1 cut(s) 276
MseI TTAA 4 cut(s) 140, 201, 323, 492
MslI CAYNNNNRTG 1 cut(s) 42
MvnI CGCG 2 cut(s) 93, 675
MwoI GCNNNNNNNGC 2 cut(s) 476, 512
NdeII GATC 2 cut(s) 397, 859
NlaIII CATG 3 cut(s) 109, 444, 801
NlaIV GGNNCC 3 cut(s) 514, 619, 736
NsbI TGCGCA 1 cut(s) 449
NsiI ATGCAT 1 cut(s) 442
NspI RCATGY 2 cut(s) 444, 801
PdmI GAANNNNTTC 1 cut(s) 276
PfeI GAWTC 2 cut(s) 101, 689
PkrI GCNGC 3 cut(s) 115, 664, 781
PleI GAGTC 1 cut(s) 792
PpsI GAGTC 1 cut(s) 792
Ppu21I YACGTR 1 cut(s) 329
Psp1406I AACGTT 1 cut(s) 368
PspN4I GGNNCC 3 cut(s) 514, 619, 736
PspPI GGNCC 1 cut(s) 735
PsuI RGATCY 1 cut(s) 859
RsaI GTAC 1 cut(s) 244
RsaNI GTAC 1 cut(s) 243
RseI CAYNNNNRTG 1 cut(s) 42
SaqAI TTAA 4 cut(s) 140, 201, 323, 492
SatI GCNGC 3 cut(s) 114, 663, 780
Sau3AI GATC 2 cut(s) 397, 859
Sau96I GGNCC 1 cut(s) 735
SchI GAGTC 1 cut(s) 793
SfaNI GCATC 3 cut(s) 493, 670, 844
SmiMI CAYNNNNRTG 1 cut(s) 42
SmlI CTYRAG 1 cut(s) 832
SmoI CTYRAG 1 cut(s) 832
Sse9I AATT 5 cut(s) 59, 202, 577, 607, 808
SsiI CCGC 2 cut(s) 126, 820
SspMI CTAG 4 cut(s) 464, 486, 666, 848
StyI CCWWGG 1 cut(s) 463
TaiI ACGT 2 cut(s) 331, 371
TaqI TCGA 2 cut(s) 373, 715
TasI AATT 5 cut(s) 59, 202, 577, 607, 808
TfiI GAWTC 2 cut(s) 101, 689
Tru1I TTAA 4 cut(s) 140, 201, 323, 492
Tru9I TTAA 4 cut(s) 140, 201, 323, 492
TscAI CASTG 1 cut(s) 736
TseI GCWGC 3 cut(s) 113, 662, 779
TspDTI ATGAA 1 cut(s) 587
TspRI CASTG 1 cut(s) 736
XapI RAATTY 1 cut(s) 59
XbaI TCTAGA 1 cut(s) 847
XceI RCATGY 2 cut(s) 444, 801
XmaJI CCTAGG 1 cut(s) 463
XmnI GAANNNNTTC 1 cut(s) 276
XspI CTAG 4 cut(s) 464, 486, 666, 848
Zsp2I ATGCAT 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.