Rh6DG042100

nucleobase-ascorbate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0007574
Physical Location & Seq
Reverse (-)
4494164 .. 4498756
4593 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG042100.1

Sequence Viewer

Length: 1449 bp
ATGTTGGGCACCACTGTGTTCATCCCCACCTTGCTTGTCCCTATAATGGGTGGTGGCGATGTAGAGAAGGCAAAAGTGATTGATACTGTGCTCTTTGTCGCCGGCATTAACACACTATTACAGACTTGGTTTGGGACTCGTATCCCTGTGGTGATGGGGGCTTCATACGCTTTCATCATCCCTGCTCTCTCCATCGCTTATTCCAGGAGGTTCAGTGTATTCATAGACCCCCACCAGAGGTTCAGAGAAACTATGCAAGCAATACAAGGAGCAATCATAATTGCATCATTCTTGCAAATGATCCTTGGCTTTTTGGGGTTTGTGAGAATTTTTGGGAGGCATCTTAGTCCTCTATCTTCTGTTCCTCTAGTGACTCTTACTGGACTGGGGTTCTTTGTACTTGGTTTTCCTTTGTTGGCAAAATGTGTTGAAGTTGGATTACCGGCCCTACTTATATTGCTTCTTCTATCACAGTATGCCTCCACAATGAAGTTAAAGATACCAATATTTGATCGATTTGCGGTACTATTCACTGTTGCAATAGTATGGGTGTACGCAGTAATTTTGACTGCAGGTGGTGCTTATGATCATAGATCCCCTAGAACTCAAACTAGCTGCCGCACTGATCGTTCTGGGCTTGTCAGGGCTGCTCCTTGGGTAAGGGTTCCCTATCCATTCCAATGGGGGCGGCCGGATTTTAAGGCTGGAGATACTGTTGCAATTATGGCTGCTGCTTTTGTTTCCATAATTGAGTCCGTAGGTGTATTCATTGCAGCATCAAGATATGGGAGTGCCACCCCTCCACCACCTTCTGTTCTGAGCCGGGGTATAGGCTGGCAGGGCATAAGCACTCTTCTGAATGGCATCTTTGGCTCATTAACTGGCTCAACTGCATCAGTTGAAAATGCAGGTTTGTTGGGATTGACACGTGTTGGGAGTCGAAGAGTGATTCAATTATCAGCAGGCTTTATGTTTTTCTTCTCTGTATTAGGAAAGTTTGGGGCTATTCTTGCATCTATACCACTTCCAATTGTGGCAGCTCTGTATTGCGTTCTCTACGCGTATGTTGCTTCTGCTGGTCTTGGTTTATTGCAGTTCTGCAACCTTAACAGCTTTAGGTCAAAGTTCATCATTGGTTTTTCTCTCTTCATGGGTCTTTCTGTGCCTCAGTACTTTCATGACTACATCTTAACTTCTGGTCATGGCCCTCTTCACACACATCAAATCTGGTTCAACAACATTGTGCAAGTAATTTTCTCTTCTGCTGCAACTGTAGCAATCATAGTTGCTCTCTTTTTCGACCTCACCACGGGCTGTGGACACAGTTCTACTAGGCGGGACAGTGGCCGACACTGGTGGGGAAAGTTCAGAAAATTTGACACAGATACCAGGAGTGAAGAGTTCTACTCACTTCCATACAACCTTAATAGGCATTTCCCTTCAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Xan_ur_permease

Protein Analysis

482

Amino Acids

52.66

Weight (kDa)

9.95

Isoelectric Point (pI)

34.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Xan_ur_permease PF00860 6 - 392 1.5e-59 Permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 563
Acc36I ACCTGC 2 cut(s) 563, 899
AccB1I GGYRCC 1 cut(s) 8
AccII CGCG 1 cut(s) 1061
AciI CCGC 4 cut(s) 521, 619, 688, 1336
AclWI GGATC 2 cut(s) 295, 588
AcoI YGGCCR 2 cut(s) 689, 1345
AcsI RAATTY 2 cut(s) 327, 1373
AcuI CTGAAG 1 cut(s) 1425
AcvI CACGTG 1 cut(s) 929
AfaI GTAC 4 cut(s) 399, 525, 554, 1172
AfiI CCNNNNNNNGG 4 cut(s) 46, 47, 237, 1309
AflIII ACRYGT 3 cut(s) 926, 928, 1059
AgsI TTSAA 4 cut(s) 431, 902, 953, 1234
AjnI CCWGG 2 cut(s) 203, 1388
AleI CACNNNNGTG 1 cut(s) 14
AluBI AGCT 3 cut(s) 615, 1040, 1113
AluI AGCT 3 cut(s) 615, 1040, 1113
Alw21I GWGCWC 1 cut(s) 93
AlwI GGATC 2 cut(s) 295, 588
AoxI GGCC 4 cut(s) 444, 689, 1204, 1345
ApeKI GCWGC 7 cut(s) 615, 647, 728, 731, 773, 1037, 1265
ApoI RAATTY 2 cut(s) 327, 1373
AspS9I GGNCC 2 cut(s) 445, 1205
AsuC2I CCSGG 1 cut(s) 824
AsuHPI GGTGA 2 cut(s) 163, 1297
BaeGI GKGCMC 1 cut(s) 11
BanI GGYRCC 1 cut(s) 8
BarI GAAGNNNNNNTAC 2 cut(s) 423, 455
BbrPI CACGTG 1 cut(s) 929
Bbv12I GWGCWC 1 cut(s) 93
BbvI GCAGC 7 cut(s) 602, 634, 715, 718, 785, 1049, 1252
BccI CCATC 2 cut(s) 148, 200
BciT130I CCWGG 2 cut(s) 205, 1390
BciVI GTATCC 1 cut(s) 152
BclI TGATCA 1 cut(s) 586
BcnI CCSGG 1 cut(s) 824
BfaI CTAG 4 cut(s) 368, 600, 612, 1332
BfmI CTRYAG 2 cut(s) 570, 1272
BfuAI ACCTGC 2 cut(s) 563, 899
BfuI GTATCC 1 cut(s) 152
BisI GCNGC 9 cut(s) 616, 619, 648, 689, 729, 732, 774, 1038, 1266
BlsI GCNGC 9 cut(s) 617, 620, 649, 690, 730, 733, 775, 1039, 1267
BmcAI AGTACT 1 cut(s) 1172
Bme1390I CCNGG 3 cut(s) 205, 824, 1390
BmgT120I GGNCC 2 cut(s) 445, 1205
BmiI GGNNCC 2 cut(s) 10, 666
BmrFI CCNGG 3 cut(s) 205, 824, 1390
BmrI ACTGGG 1 cut(s) 395
BmsI GCATC 6 cut(s) 293, 349, 785, 873, 902, 1022
BmuI ACTGGG 1 cut(s) 395
BplI GAGNNNNNCTC 2 cut(s) 1391, 1423
BpmI CTGGAG 1 cut(s) 726
BpuMI CCSGG 1 cut(s) 824
Bsa29I ATCGAT 1 cut(s) 514
BsaAI YACGTR 1 cut(s) 929
BsaJI CCNNGG 4 cut(s) 304, 653, 823, 1308
BsaXI ACNNNNNCTCC 4 cut(s) 199, 229, 699, 729
Bsc4I CCNNNNNNNGG 4 cut(s) 46, 47, 237, 1309
Bse118I RCCGGY 2 cut(s) 101, 442
Bse1I ACTGG 4 cut(s) 385, 390, 886, 1358
Bse3DI GCAATG 1 cut(s) 768
BseBI CCWGG 2 cut(s) 205, 1390
BseCI ATCGAT 1 cut(s) 514
BseDI CCNNGG 4 cut(s) 304, 653, 823, 1308
BseGI GGATG 2 cut(s) 21, 177
BseLI CCNNNNNNNGG 4 cut(s) 46, 47, 237, 1309
BseMI GCAATG 1 cut(s) 768
BseMII CTCAG 2 cut(s) 809, 1181
BseNI ACTGG 4 cut(s) 385, 390, 886, 1358
BseSI GKGCMC 1 cut(s) 11
BseX3I CGGCCG 1 cut(s) 689
BseXI GCAGC 7 cut(s) 602, 634, 715, 718, 785, 1049, 1252
Bsh1236I CGCG 1 cut(s) 1061
Bsh1285I CGRYCG 1 cut(s) 692
BshFI GGCC 4 cut(s) 446, 691, 1206, 1347
BshNI GGYRCC 1 cut(s) 8
BshVI ATCGAT 1 cut(s) 514
BsiEI CGRYCG 1 cut(s) 692
BsiHKAI GWGCWC 1 cut(s) 93
BsiSI CCGG 4 cut(s) 102, 443, 692, 823
BslFI GGGAC 3 cut(s) 23, 148, 1352
BslI CCNNNNNNNGG 4 cut(s) 46, 47, 237, 1309
BsmFI GGGAC 3 cut(s) 23, 148, 1352
BsnI GGCC 4 cut(s) 446, 691, 1206, 1347
Bsp1286I GDGCHC 2 cut(s) 11, 93
Bsp143I GATC 5 cut(s) 300, 511, 586, 593, 625
BspACI CCGC 4 cut(s) 521, 619, 688, 1336
BspANI GGCC 4 cut(s) 446, 691, 1206, 1347
BspCNI CTCAG 2 cut(s) 810, 1180
BspDI ATCGAT 1 cut(s) 514
BspFNI CGCG 1 cut(s) 1061
BspHI TCATGA 1 cut(s) 1177
BspLI GGNNCC 2 cut(s) 10, 666
BspMAI CTGCAG 1 cut(s) 574
BspMI ACCTGC 2 cut(s) 563, 899
BspPI GGATC 2 cut(s) 295, 588
BspT107I GGYRCC 1 cut(s) 8
BsrDI GCAATG 1 cut(s) 768
BsrFI RCCGGY 2 cut(s) 101, 442
BsrI ACTGG 4 cut(s) 385, 390, 886, 1358
BssAI RCCGGY 2 cut(s) 101, 442
BssECI CCNNGG 4 cut(s) 304, 653, 823, 1308
BssMI GATC 5 cut(s) 300, 511, 586, 593, 625
BssT1I CCWWGG 2 cut(s) 304, 653
Bst2UI CCWGG 2 cut(s) 205, 1390
Bst4CI ACNGT 8 cut(s) 16, 88, 474, 535, 715, 1273, 1325, 1343
Bst6I CTCTTC 6 cut(s) 858, 937, 1151, 1215, 1264, 1392
BstAPI GCANNNNNTGC 1 cut(s) 578
BstBAI YACGTR 1 cut(s) 929
BstC8I GCNNGC 4 cut(s) 103, 258, 836, 964
BstDEI CTNAG 3 cut(s) 344, 818, 1167
BstDSI CCRYGG 1 cut(s) 1308
BstF5I GGATG 2 cut(s) 21, 177
BstFNI CGCG 1 cut(s) 1061
BstKTI GATC 5 cut(s) 303, 514, 589, 596, 628
BstMBI GATC 5 cut(s) 300, 511, 586, 593, 625
BstMCI CGRYCG 1 cut(s) 692
BstMWI GCNNNNNNNGC 8 cut(s) 167, 578, 725, 840, 870, 1010, 1067, 1274
BstNI CCWGG 2 cut(s) 205, 1390
BstSCI CCNGG 3 cut(s) 203, 822, 1388
BstSFI CTRYAG 2 cut(s) 570, 1272
BstSLI GKGCMC 1 cut(s) 11
BstUI CGCG 1 cut(s) 1061
BstV1I GCAGC 7 cut(s) 602, 634, 715, 718, 785, 1049, 1252
BstX2I RGATCY 1 cut(s) 593
BstXI CCANNNNNNTGG 1 cut(s) 681
BstYI RGATCY 1 cut(s) 593
BstZI CGGCCG 1 cut(s) 689
Bsu15I ATCGAT 1 cut(s) 514
BsuI GTATCC 1 cut(s) 152
BsuRI GGCC 4 cut(s) 446, 691, 1206, 1347
BsuTUI ATCGAT 1 cut(s) 514
BtgI CCRYGG 1 cut(s) 1308
BtgZI GCGATG 2 cut(s) 72, 178
BtsCI GGATG 2 cut(s) 21, 177
BtsIMutI CAGTG 6 cut(s) 12, 220, 531, 621, 1348, 1351
BveI ACCTGC 2 cut(s) 563, 899
Cac8I GCNNGC 4 cut(s) 103, 258, 836, 964
CciI TCATGA 1 cut(s) 1177
Cfr10I RCCGGY 2 cut(s) 101, 442
Cfr13I GGNCC 2 cut(s) 445, 1205
ClaI ATCGAT 1 cut(s) 514
Csp6I GTAC 4 cut(s) 398, 524, 553, 1171
CspCI CAANNNNNGTGG 2 cut(s) 16, 51
CviAII CATG 3 cut(s) 1150, 1178, 1202
CviQI GTAC 4 cut(s) 398, 524, 553, 1171
DdeI CTNAG 3 cut(s) 344, 818, 1167
DpnI GATC 5 cut(s) 302, 513, 588, 595, 627
DpnII GATC 5 cut(s) 300, 511, 586, 593, 625
EaeI YGGCCR 2 cut(s) 689, 1345
EagI CGGCCG 1 cut(s) 689
Eam1104I CTCTTC 6 cut(s) 858, 937, 1151, 1215, 1264, 1392
EarI CTCTTC 6 cut(s) 858, 937, 1151, 1215, 1264, 1392
EclXI CGGCCG 1 cut(s) 689
Eco130I CCWWGG 2 cut(s) 304, 653
Eco52I CGGCCG 1 cut(s) 689
Eco57I CTGAAG 1 cut(s) 1425
Eco72I CACGTG 1 cut(s) 929
EcoRII CCWGG 2 cut(s) 203, 1388
EcoT14I CCWWGG 2 cut(s) 304, 653
ErhI CCWWGG 2 cut(s) 304, 653
FaeI CATG 3 cut(s) 1153, 1181, 1205
FaqI GGGAC 3 cut(s) 23, 148, 1352
FatI CATG 3 cut(s) 1149, 1177, 1201
FauI CCCGC 1 cut(s) 1329
FbaI TGATCA 1 cut(s) 586
Fnu4HI GCNGC 9 cut(s) 616, 619, 648, 689, 729, 732, 774, 1038, 1266
FokI GGATG 2 cut(s) 8, 164
Fsp4HI GCNGC 9 cut(s) 616, 619, 648, 689, 729, 732, 774, 1038, 1266
FspBI CTAG 4 cut(s) 368, 600, 612, 1332
GluI GCNGC 9 cut(s) 616, 619, 648, 689, 729, 732, 774, 1038, 1266
GsuI CTGGAG 1 cut(s) 726
HaeIII GGCC 4 cut(s) 446, 691, 1206, 1347
HapII CCGG 4 cut(s) 102, 443, 692, 823
Hin1II CATG 3 cut(s) 1153, 1181, 1205
HinfI GANTC 5 cut(s) 136, 373, 752, 937, 949
HpaII CCGG 4 cut(s) 102, 443, 692, 823
HphI GGTGA 2 cut(s) 163, 1297
Hpy166II GTNNAC 2 cut(s) 553, 1319
Hpy188I TCNGA 5 cut(s) 245, 819, 858, 1370, 1448
Hpy188III TCNNGA 2 cut(s) 780, 1178
Hpy8I GTNNAC 2 cut(s) 553, 1319
HpyAV CCTTC 3 cut(s) 61, 819, 1449
HpyCH4III ACNGT 8 cut(s) 16, 88, 474, 535, 715, 1273, 1325, 1343
HpyCH4IV ACGT 1 cut(s) 928
HpyF10VI GCNNNNNNNGC 8 cut(s) 167, 578, 725, 840, 870, 1010, 1067, 1274
HpyF3I CTNAG 3 cut(s) 344, 818, 1167
HpySE526I ACGT 1 cut(s) 928
Hsp92II CATG 3 cut(s) 1153, 1181, 1205
KroI GCCGGC 1 cut(s) 101
KroNI GCCGGC 1 cut(s) 103
Ksp22I TGATCA 1 cut(s) 586
Kzo9I GATC 5 cut(s) 300, 511, 586, 593, 625
LmnI GCTCC 2 cut(s) 269, 655
Lsp1109I GCAGC 7 cut(s) 602, 634, 715, 718, 785, 1049, 1252
LweI GCATC 6 cut(s) 293, 349, 785, 873, 902, 1022
MaeI CTAG 4 cut(s) 368, 600, 612, 1332
MaeII ACGT 1 cut(s) 928
MaeIII GTNAC 1 cut(s) 370
MalI GATC 5 cut(s) 302, 513, 588, 595, 627
MboI GATC 5 cut(s) 300, 511, 586, 593, 625
MboII GAAGA 9 cut(s) 348, 455, 845, 954, 970, 1138, 1202, 1251, 1409
MfeI CAATTG 1 cut(s) 1029
MflI RGATCY 1 cut(s) 593
MhlI GDGCHC 2 cut(s) 11, 93
MluCI AATT 9 cut(s) 279, 327, 561, 720, 747, 953, 1029, 1251, 1373
MluI ACGCGT 1 cut(s) 1059
MlyI GAGTC 4 cut(s) 130, 367, 761, 946
MmeI TCCRAC 1 cut(s) 415
MroNI GCCGGC 1 cut(s) 101
MseI TTAA 7 cut(s) 108, 494, 699, 878, 1107, 1190, 1425
MslI CAYNNNNRTG 2 cut(s) 14, 679
MspI CCGG 4 cut(s) 102, 443, 692, 823
MspR9I CCNGG 3 cut(s) 205, 824, 1390
MunI CAATTG 1 cut(s) 1029
MvaI CCWGG 2 cut(s) 205, 1390
MvnI CGCG 1 cut(s) 1061
MwoI GCNNNNNNNGC 8 cut(s) 167, 578, 725, 840, 870, 1010, 1067, 1274
NaeI GCCGGC 1 cut(s) 103
NciI CCSGG 1 cut(s) 824
NdeII GATC 5 cut(s) 300, 511, 586, 593, 625
NgoMIV GCCGGC 1 cut(s) 101
NlaIII CATG 3 cut(s) 1153, 1181, 1205
NlaIV GGNNCC 2 cut(s) 10, 666
NmuCI GTSAC 1 cut(s) 370
OliI CACNNNNGTG 1 cut(s) 14
PagI TCATGA 1 cut(s) 1177
PaqCI CACCTGC 1 cut(s) 563
PdiI GCCGGC 1 cut(s) 103
PfeI GAWTC 1 cut(s) 949
PfoI TCCNGGA 1 cut(s) 203
PkrI GCNGC 9 cut(s) 617, 620, 649, 690, 730, 733, 775, 1039, 1267
PleI GAGTC 4 cut(s) 130, 367, 760, 945
PmaCI CACGTG 1 cut(s) 929
PmlI CACGTG 1 cut(s) 929
PpsI GAGTC 4 cut(s) 130, 367, 760, 945
Ppu21I YACGTR 1 cut(s) 929
Psp6I CCWGG 2 cut(s) 203, 1388
PspCI CACGTG 1 cut(s) 929
PspGI CCWGG 2 cut(s) 203, 1388
PspN4I GGNNCC 2 cut(s) 10, 666
PspPI GGNCC 2 cut(s) 445, 1205
PstI CTGCAG 1 cut(s) 574
PsuI RGATCY 1 cut(s) 593
RsaI GTAC 4 cut(s) 399, 525, 554, 1172
RsaNI GTAC 4 cut(s) 398, 524, 553, 1171
RseI CAYNNNNRTG 2 cut(s) 14, 679
SaqAI TTAA 7 cut(s) 108, 494, 699, 878, 1107, 1190, 1425
SatI GCNGC 9 cut(s) 616, 619, 648, 689, 729, 732, 774, 1038, 1266
Sau3AI GATC 5 cut(s) 300, 511, 586, 593, 625
Sau96I GGNCC 2 cut(s) 445, 1205
ScaI AGTACT 1 cut(s) 1172
SchI GAGTC 4 cut(s) 130, 367, 761, 946
ScrFI CCNGG 3 cut(s) 205, 824, 1390
SduI GDGCHC 2 cut(s) 11, 93
SfaNI GCATC 6 cut(s) 293, 349, 785, 873, 902, 1022
SfcI CTRYAG 2 cut(s) 570, 1272
SmiMI CAYNNNNRTG 2 cut(s) 14, 679
Sse9I AATT 9 cut(s) 279, 327, 561, 720, 747, 953, 1029, 1251, 1373
SsiI CCGC 4 cut(s) 521, 619, 688, 1336
SspI AATATT 1 cut(s) 507
SspMI CTAG 4 cut(s) 368, 600, 612, 1332
StyD4I CCNGG 3 cut(s) 203, 822, 1388
StyI CCWWGG 2 cut(s) 304, 653
TaaI ACNGT 8 cut(s) 16, 88, 474, 535, 715, 1273, 1325, 1343
TaiI ACGT 1 cut(s) 931
TaqI TCGA 3 cut(s) 514, 940, 1299
TasI AATT 9 cut(s) 279, 327, 561, 720, 747, 953, 1029, 1251, 1373
TatI WGTACW 2 cut(s) 397, 1170
TauI GCSGC 2 cut(s) 621, 691
TfiI GAWTC 1 cut(s) 949
Tru1I TTAA 7 cut(s) 108, 494, 699, 878, 1107, 1190, 1425
Tru9I TTAA 7 cut(s) 108, 494, 699, 878, 1107, 1190, 1425
TscAI CASTG 6 cut(s) 19, 220, 538, 628, 1348, 1358
TseFI GTSAC 1 cut(s) 370
TseI GCWGC 7 cut(s) 615, 647, 728, 731, 773, 1037, 1265
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 9 cut(s) 10, 153, 163, 211, 503, 757, 1117, 1138, 1166
TspGWI ACGGA 1 cut(s) 745
TspRI CASTG 6 cut(s) 19, 220, 538, 628, 1348, 1358
XapI RAATTY 2 cut(s) 327, 1373
XspI CTAG 4 cut(s) 368, 600, 612, 1332
ZrmI AGTACT 1 cut(s) 1172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.