Rroxscaffold_7G00212500

nucleobase-ascorbate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0007574
Physical Location & Seq
Forward (+)
62974757 .. 62979707
4951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00212500.1

Sequence Viewer

Length: 1680 bp
ATGGGTTTTATAAAAGGTTTCATTTTGGGTCATAGCTCTGCCTCAAAACTCAAAGTGGATGTGTTCATGTGTTTTTCCTTACTTTTGGGCCAAATGTATGTGTATGCTGATGAAATTACTTGTGCTGGGTATTCTCCTCTTGTTTGGGTAGTGTCAATTCTGTGTGGTTACCCAGAAACTGAAGCCATACTTCTGGGATTTCAGCACTTTGTTGTTATGTTGGGCACCACTGTGTTCATCCCCACCGTGCTTGTCCCTATAATGGGTGGTGGTGATGTAGAGAAGGCAGAAGTGATTGATACTGTGCTCTTTGTCGCTGGCATTAATACACTGTTACAGACTTGGTTTGGGACTCGTATCCCTGTGGTGATGGGGGCTTCATACGCTTTCATCATCCCTGCTCTCTCCATTGCTTATTCCAGGAAGTTCAGTGTATACATAGACCCCCACCAGAGGTTCAGAGAAACTATGAAAGCAATACAAGGAGCGCTCATAATTGCATCATTCTTGCAAATGATCCTAGGCTTTTTGGGATTTGTGAGAATTTTTGCGAGGTATCTTAGTCCTCTCTCTTCTGTTCCTCTAGTGACTCTTACTGGACTGGGGTTCTTTGTACTTGGTTTTCCTTTGTTGGCAAATTGTGTTGAAGTTGGATTACCGGCCTTGGTTATATTGCTTCTTCTATCACAGTATGCCTCCACAATGAAGTTAAAGATACCAATATTTGATCGATTTGCGGTACTATTCACTGTTGCAATAGTATGGGTGTATGCAGTAATTTTGACTGCAGCTGGTGCTTATGATCATAGATCCCCTAGAACTCAAACTAGCTGCCGCACTGATCGTTCTGGGCTTGTCAGGGCTGCTCCTTGGGTAAGGGTTCCCTATCCATTCCAATGGGGGCGGCCGGATTTTAATGCTGGATATACTCTTGCAATTATGGCTGCTGCTTTTGTTGCCATGATTGAGTCCATAGGTGTATTCATTGCTGCATCAAGATATGCGAGTGCCACCCCTCCACCACCTTCTGTTCTGAGCCGAGGTATAGGCTGGCAGGGCATAAGCACTCTTCTGAATGGCATCTTTGGCTCATTAACTGGCTCAACTGCATCAGTGTTTGTTGGGATTGACACGTGTTGGAAGTCGAAGAGTGATTCAAATATCAGCAGGCTTTATGTTTTTCTTCTCTGTATTAGTATGTCACTATTTATGTCATTCACAGGAAAGTTTGGGGCTATTCTGGCATCTATACCACTTCCAATTGTGGCAGCTCTGTATTGTGTTCTCTATGCCTATGTTGTTTCTGCTGGTCTTGGTTTATTGCAGTTCTGCAACCTTAACAGCTTTAGGTCAAAGTTCATCATTGGTTTTTCTGTCTTCATGGGTCTTTCTGTGCCTCAGTACTTTCATGATTACATCTTAACTTCTGGTCATGGCCCTCTTCACACACATCAAATCTGGTTCAACAACATTGTGCAAGTAATTTTCTCTTCTGCTGCAACTGTAGCCATCATAGTTGCTCTCTTCTTCGACCTCACCAAGGGCCGTGGACACGGTTCTACCAGGCGGGACAGCGGCCGACACTGGTGGGGAAAGTTCAGAAAATTTGACACAGATACCAGGAGCGAAGAGTTCTACTCACTTCCATACAACCTTAATAGGCATTTCCCTTCAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Xan_ur_permease

Protein Analysis

559

Amino Acids

61.49

Weight (kDa)

9.35

Isoelectric Point (pI)

33.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Xan_ur_permease PF00860 61 - 469 1.7e-54 Permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 11
AccB1I GGYRCC 1 cut(s) 224
AccI GTMKAC 1 cut(s) 435
AciI CCGC 5 cut(s) 737, 835, 904, 1567, 1575
AclWI GGATC 2 cut(s) 511, 804
AcoI YGGCCR 2 cut(s) 905, 1576
AcsI RAATTY 2 cut(s) 543, 1604
AcuI CTGAAG 2 cut(s) 201, 1656
AcvI CACGTG 1 cut(s) 1134
AfaI GTAC 3 cut(s) 615, 741, 1403
AfeI AGCGCT 1 cut(s) 489
AfiI CCNNNNNNNGG 4 cut(s) 262, 263, 453, 1540
AflIII ACRYGT 2 cut(s) 1131, 1133
AgsI TTSAA 3 cut(s) 647, 1158, 1465
AjnI CCWGG 3 cut(s) 419, 1562, 1619
AleI CACNNNNGTG 1 cut(s) 230
AluBI AGCT 5 cut(s) 36, 791, 831, 1271, 1344
AluI AGCT 5 cut(s) 36, 791, 831, 1271, 1344
Alw21I GWGCWC 1 cut(s) 309
AlwI GGATC 2 cut(s) 511, 804
AlwNI CAGNNNCTG 1 cut(s) 179
Aor51HI AGCGCT 1 cut(s) 489
AoxI GGCC 6 cut(s) 88, 660, 905, 1435, 1543, 1576
ApeKI GCWGC 8 cut(s) 788, 831, 863, 944, 947, 989, 1268, 1496
ApoI RAATTY 2 cut(s) 543, 1604
AseI ATTAAT 1 cut(s) 324
AspA2I CCTAGG 1 cut(s) 520
AspLEI GCGC 1 cut(s) 490
AspS9I GGNCC 3 cut(s) 88, 1436, 1543
AsuHPI GGTGA 3 cut(s) 284, 379, 1528
AvrII CCTAGG 1 cut(s) 520
BaeGI GKGCMC 1 cut(s) 227
BanI GGYRCC 1 cut(s) 224
BarI GAAGNNNNNNTAC 2 cut(s) 639, 671
BbrPI CACGTG 1 cut(s) 1134
BbsI GAAGAC 1 cut(s) 1369
Bbv12I GWGCWC 1 cut(s) 309
BbvI GCAGC 8 cut(s) 800, 818, 850, 931, 934, 976, 1280, 1483
BccI CCATC 2 cut(s) 364, 1517
BceAI ACGGC 1 cut(s) 1530
BciT130I CCWGG 3 cut(s) 421, 1564, 1621
BciVI GTATCC 1 cut(s) 368
BclI TGATCA 1 cut(s) 802
BfaI CTAG 4 cut(s) 521, 584, 816, 828
BfmI CTRYAG 2 cut(s) 786, 1503
BfoI RGCGCY 1 cut(s) 491
BfuI GTATCC 1 cut(s) 368
BlnI CCTAGG 1 cut(s) 520
BmcAI AGTACT 1 cut(s) 1403
Bme1390I CCNGG 3 cut(s) 421, 1564, 1621
BmgT120I GGNCC 3 cut(s) 88, 1436, 1543
BmiI GGNNCC 2 cut(s) 226, 882
BmrFI CCNGG 3 cut(s) 421, 1564, 1621
BmrI ACTGGG 1 cut(s) 611
BmsI GCATC 5 cut(s) 509, 1001, 1089, 1118, 1253
BmuI ACTGGG 1 cut(s) 611
BpiI GAAGAC 1 cut(s) 1369
BplI GAGNNNNNCTC 2 cut(s) 1622, 1654
Bsa29I ATCGAT 1 cut(s) 730
BsaAI YACGTR 1 cut(s) 1134
BsaJI CCNNGG 6 cut(s) 520, 663, 869, 1039, 1539, 1546
Bsc4I CCNNNNNNNGG 4 cut(s) 262, 263, 453, 1540
Bse118I RCCGGY 1 cut(s) 658
Bse1I ACTGG 4 cut(s) 601, 606, 1102, 1589
Bse3DI GCAATG 2 cut(s) 408, 984
BseBI CCWGG 3 cut(s) 421, 1564, 1621
BseCI ATCGAT 1 cut(s) 730
BseDI CCNNGG 6 cut(s) 520, 663, 869, 1039, 1539, 1546
BseGI GGATG 3 cut(s) 64, 237, 393
BseLI CCNNNNNNNGG 4 cut(s) 262, 263, 453, 1540
BseMI GCAATG 2 cut(s) 408, 984
BseMII CTCAG 2 cut(s) 1025, 1412
BseNI ACTGG 4 cut(s) 601, 606, 1102, 1589
BseRI GAGGAG 1 cut(s) 126
BseSI GKGCMC 1 cut(s) 227
BseX3I CGGCCG 2 cut(s) 905, 1576
BseXI GCAGC 8 cut(s) 800, 818, 850, 931, 934, 976, 1280, 1483
BseYI CCCAGC 1 cut(s) 125
Bsh1285I CGRYCG 2 cut(s) 908, 1579
BshFI GGCC 6 cut(s) 90, 662, 907, 1437, 1545, 1578
BshNI GGYRCC 1 cut(s) 224
BshVI ATCGAT 1 cut(s) 730
BsiEI CGRYCG 2 cut(s) 908, 1579
BsiHKAI GWGCWC 1 cut(s) 309
BsiSI CCGG 2 cut(s) 659, 908
BslFI GGGAC 3 cut(s) 239, 364, 1583
BslI CCNNNNNNNGG 4 cut(s) 262, 263, 453, 1540
BsmFI GGGAC 3 cut(s) 239, 364, 1583
BsnI GGCC 6 cut(s) 90, 662, 907, 1437, 1545, 1578
Bsp1286I GDGCHC 2 cut(s) 227, 309
Bsp143I GATC 5 cut(s) 516, 727, 802, 809, 841
BspACI CCGC 5 cut(s) 737, 835, 904, 1567, 1575
BspANI GGCC 6 cut(s) 90, 662, 907, 1437, 1545, 1578
BspCNI CTCAG 2 cut(s) 1026, 1411
BspDI ATCGAT 1 cut(s) 730
BspHI TCATGA 1 cut(s) 1408
BspLI GGNNCC 2 cut(s) 226, 882
BspMAI CTGCAG 1 cut(s) 790
BspPI GGATC 2 cut(s) 511, 804
BspT107I GGYRCC 1 cut(s) 224
BsrDI GCAATG 2 cut(s) 408, 984
BsrFI RCCGGY 1 cut(s) 658
BsrI ACTGG 4 cut(s) 601, 606, 1102, 1589
BssAI RCCGGY 1 cut(s) 658
BssECI CCNNGG 6 cut(s) 520, 663, 869, 1039, 1539, 1546
BssMI GATC 5 cut(s) 516, 727, 802, 809, 841
BssNAI GTATAC 1 cut(s) 436
BssT1I CCWWGG 4 cut(s) 520, 663, 869, 1539
Bst1107I GTATAC 1 cut(s) 436
Bst2UI CCWGG 3 cut(s) 421, 1564, 1621
Bst4CI ACNGT 8 cut(s) 232, 247, 304, 333, 690, 751, 1504, 1556
Bst6I CTCTTC 7 cut(s) 577, 1074, 1142, 1446, 1495, 1529, 1623
BstAPI GCANNNNNTGC 1 cut(s) 794
BstBAI YACGTR 1 cut(s) 1134
BstC8I GCNNGC 3 cut(s) 319, 1052, 1169
BstDEI CTNAG 3 cut(s) 560, 1034, 1398
BstDSI CCRYGG 1 cut(s) 1546
BstEII GGTNACC 1 cut(s) 167
BstENI CCTNNNNNAGG 1 cut(s) 1538
BstF5I GGATG 3 cut(s) 64, 237, 393
BstH2I RGCGCY 1 cut(s) 491
BstHHI GCGC 1 cut(s) 490
BstKTI GATC 5 cut(s) 519, 730, 805, 812, 844
BstMBI GATC 5 cut(s) 516, 727, 802, 809, 841
BstMCI CGRYCG 2 cut(s) 908, 1579
BstMWI GCNNNNNNNGC 8 cut(s) 383, 794, 941, 956, 1056, 1086, 1241, 1505
BstNI CCWGG 3 cut(s) 421, 1564, 1621
BstPI GGTNACC 1 cut(s) 167
BstSCI CCNGG 3 cut(s) 419, 1562, 1619
BstSFI CTRYAG 2 cut(s) 786, 1503
BstSLI GKGCMC 1 cut(s) 227
BstV1I GCAGC 8 cut(s) 800, 818, 850, 931, 934, 976, 1280, 1483
BstV2I GAAGAC 1 cut(s) 1369
BstX2I RGATCY 1 cut(s) 809
BstXI CCANNNNNNTGG 2 cut(s) 193, 897
BstYI RGATCY 1 cut(s) 809
BstZ17I GTATAC 1 cut(s) 436
BstZI CGGCCG 2 cut(s) 905, 1576
Bsu15I ATCGAT 1 cut(s) 730
BsuI GTATCC 1 cut(s) 368
BsuRI GGCC 6 cut(s) 90, 662, 907, 1437, 1545, 1578
BsuTUI ATCGAT 1 cut(s) 730
BtgI CCRYGG 1 cut(s) 1546
BtsCI GGATG 3 cut(s) 64, 237, 393
BtsIMutI CAGTG 8 cut(s) 228, 329, 436, 747, 837, 1119, 1582, 1680
Cac8I GCNNGC 3 cut(s) 319, 1052, 1169
CaiI CAGNNNCTG 1 cut(s) 179
CciI TCATGA 1 cut(s) 1408
CfoI GCGC 1 cut(s) 490
Cfr10I RCCGGY 1 cut(s) 658
Cfr13I GGNCC 3 cut(s) 88, 1436, 1543
ClaI ATCGAT 1 cut(s) 730
Csp6I GTAC 3 cut(s) 614, 740, 1402
CspCI CAANNNNNGTGG 4 cut(s) 232, 267, 1528, 1563
CviAII CATG 5 cut(s) 67, 961, 1381, 1409, 1433
CviQI GTAC 3 cut(s) 614, 740, 1402
DdeI CTNAG 3 cut(s) 560, 1034, 1398
DpnI GATC 5 cut(s) 518, 729, 804, 811, 843
DpnII GATC 5 cut(s) 516, 727, 802, 809, 841
EaeI YGGCCR 2 cut(s) 905, 1576
EagI CGGCCG 2 cut(s) 905, 1576
Eam1104I CTCTTC 7 cut(s) 577, 1074, 1142, 1446, 1495, 1529, 1623
EarI CTCTTC 7 cut(s) 577, 1074, 1142, 1446, 1495, 1529, 1623
EclXI CGGCCG 2 cut(s) 905, 1576
Eco130I CCWWGG 4 cut(s) 520, 663, 869, 1539
Eco47III AGCGCT 1 cut(s) 489
Eco52I CGGCCG 2 cut(s) 905, 1576
Eco57I CTGAAG 2 cut(s) 201, 1656
Eco72I CACGTG 1 cut(s) 1134
Eco91I GGTNACC 1 cut(s) 167
EcoNI CCTNNNNNAGG 1 cut(s) 1538
EcoO65I GGTNACC 1 cut(s) 167
EcoRII CCWGG 3 cut(s) 419, 1562, 1619
EcoT14I CCWWGG 4 cut(s) 520, 663, 869, 1539
ErhI CCWWGG 4 cut(s) 520, 663, 869, 1539
FaeI CATG 5 cut(s) 70, 964, 1384, 1412, 1436
FalI AAGNNNNNCTT 2 cut(s) 174, 206
FaqI GGGAC 3 cut(s) 239, 364, 1583
FatI CATG 5 cut(s) 66, 960, 1380, 1408, 1432
FauI CCCGC 1 cut(s) 1560
FbaI TGATCA 1 cut(s) 802
FblI GTMKAC 1 cut(s) 435
FokI GGATG 3 cut(s) 71, 224, 380
FspBI CTAG 4 cut(s) 521, 584, 816, 828
GlaI GCGC 1 cut(s) 489
GsaI CCCAGC 1 cut(s) 129
HaeII RGCGCY 1 cut(s) 491
HaeIII GGCC 6 cut(s) 90, 662, 907, 1437, 1545, 1578
HapII CCGG 2 cut(s) 659, 908
HhaI GCGC 1 cut(s) 490
Hin1II CATG 5 cut(s) 70, 964, 1384, 1412, 1436
Hin6I GCGC 1 cut(s) 488
HinP1I GCGC 1 cut(s) 488
HinfI GANTC 4 cut(s) 352, 589, 968, 1154
HpaII CCGG 2 cut(s) 659, 908
HphI GGTGA 3 cut(s) 284, 379, 1528
Hpy166II GTNNAC 2 cut(s) 436, 1550
Hpy188I TCNGA 4 cut(s) 461, 1035, 1074, 1601
Hpy188III TCNNGA 2 cut(s) 996, 1409
Hpy8I GTNNAC 2 cut(s) 436, 1550
HpyAV CCTTC 3 cut(s) 277, 1035, 1680
HpyCH4III ACNGT 8 cut(s) 232, 247, 304, 333, 690, 751, 1504, 1556
HpyCH4IV ACGT 1 cut(s) 1133
HpyF10VI GCNNNNNNNGC 8 cut(s) 383, 794, 941, 956, 1056, 1086, 1241, 1505
HpyF3I CTNAG 3 cut(s) 560, 1034, 1398
HpySE526I ACGT 1 cut(s) 1133
Hsp92II CATG 5 cut(s) 70, 964, 1384, 1412, 1436
HspAI GCGC 1 cut(s) 488
Ksp22I TGATCA 1 cut(s) 802
Kzo9I GATC 5 cut(s) 516, 727, 802, 809, 841
LmnI GCTCC 3 cut(s) 485, 871, 1623
Lsp1109I GCAGC 8 cut(s) 800, 818, 850, 931, 934, 976, 1280, 1483
LweI GCATC 5 cut(s) 509, 1001, 1089, 1118, 1253
MaeI CTAG 4 cut(s) 521, 584, 816, 828
MaeII ACGT 1 cut(s) 1133
MaeIII GTNAC 4 cut(s) 167, 333, 586, 1200
MalI GATC 5 cut(s) 518, 729, 804, 811, 843
MboI GATC 5 cut(s) 516, 727, 802, 809, 841
MfeI CAATTG 1 cut(s) 1260
MflI RGATCY 1 cut(s) 809
MhlI GDGCHC 2 cut(s) 227, 309
MlyI GAGTC 3 cut(s) 346, 583, 977
MmeI TCCRAC 2 cut(s) 631, 1118
MseI TTAA 7 cut(s) 324, 710, 915, 1094, 1338, 1421, 1656
MslI CAYNNNNRTG 2 cut(s) 230, 895
MspA1I CMGCKG 2 cut(s) 791, 1575
MspI CCGG 2 cut(s) 659, 908
MspR9I CCNGG 3 cut(s) 421, 1564, 1621
MunI CAATTG 1 cut(s) 1260
MvaI CCWGG 3 cut(s) 421, 1564, 1621
MwoI GCNNNNNNNGC 8 cut(s) 383, 794, 941, 956, 1056, 1086, 1241, 1505
NdeII GATC 5 cut(s) 516, 727, 802, 809, 841
NlaIII CATG 5 cut(s) 70, 964, 1384, 1412, 1436
NlaIV GGNNCC 2 cut(s) 226, 882
NmeAIII GCCGAG 1 cut(s) 1064
NmuCI GTSAC 2 cut(s) 586, 1200
OliI CACNNNNGTG 1 cut(s) 230
PagI TCATGA 1 cut(s) 1408
PfeI GAWTC 1 cut(s) 1154
PfoI TCCNGGA 1 cut(s) 419
PleI GAGTC 3 cut(s) 346, 583, 976
PmaCI CACGTG 1 cut(s) 1134
PmlI CACGTG 1 cut(s) 1134
PpsI GAGTC 3 cut(s) 346, 583, 976
Ppu21I YACGTR 1 cut(s) 1134
PshBI ATTAAT 1 cut(s) 324
PsiI TTATAA 1 cut(s) 11
Psp6I CCWGG 3 cut(s) 419, 1562, 1619
PspCI CACGTG 1 cut(s) 1134
PspEI GGTNACC 1 cut(s) 167
PspFI CCCAGC 1 cut(s) 125
PspGI CCWGG 3 cut(s) 419, 1562, 1619
PspN4I GGNNCC 2 cut(s) 226, 882
PspPI GGNCC 3 cut(s) 88, 1436, 1543
PstI CTGCAG 1 cut(s) 790
PstNI CAGNNNCTG 1 cut(s) 179
PsuI RGATCY 1 cut(s) 809
PvuII CAGCTG 1 cut(s) 791
RsaI GTAC 3 cut(s) 615, 741, 1403
RsaNI GTAC 3 cut(s) 614, 740, 1402
RseI CAYNNNNRTG 2 cut(s) 230, 895
SaqAI TTAA 7 cut(s) 324, 710, 915, 1094, 1338, 1421, 1656
Sau3AI GATC 5 cut(s) 516, 727, 802, 809, 841
Sau96I GGNCC 3 cut(s) 88, 1436, 1543
ScaI AGTACT 1 cut(s) 1403
SchI GAGTC 3 cut(s) 346, 583, 977
ScrFI CCNGG 3 cut(s) 421, 1564, 1621
SduI GDGCHC 2 cut(s) 227, 309
SfaNI GCATC 5 cut(s) 509, 1001, 1089, 1118, 1253
SfcI CTRYAG 2 cut(s) 786, 1503
SmiMI CAYNNNNRTG 2 cut(s) 230, 895
SsiI CCGC 5 cut(s) 737, 835, 904, 1567, 1575
SspI AATATT 1 cut(s) 723
SspMI CTAG 4 cut(s) 521, 584, 816, 828
StyD4I CCNGG 3 cut(s) 419, 1562, 1619
StyI CCWWGG 4 cut(s) 520, 663, 869, 1539
TaaI ACNGT 8 cut(s) 232, 247, 304, 333, 690, 751, 1504, 1556
TaiI ACGT 1 cut(s) 1136
TaqI TCGA 3 cut(s) 730, 1145, 1530
TatI WGTACW 2 cut(s) 613, 1401
TauI GCSGC 3 cut(s) 837, 907, 1578
TfiI GAWTC 1 cut(s) 1154
Tru1I TTAA 7 cut(s) 324, 710, 915, 1094, 1338, 1421, 1656
Tru9I TTAA 7 cut(s) 324, 710, 915, 1094, 1338, 1421, 1656
TscAI CASTG 8 cut(s) 235, 336, 436, 754, 844, 1119, 1589, 1680
TseFI GTSAC 2 cut(s) 586, 1200
TseI GCWGC 8 cut(s) 788, 831, 863, 944, 947, 989, 1268, 1496
Tsp45I GTSAC 2 cut(s) 586, 1200
TspRI CASTG 8 cut(s) 235, 336, 436, 754, 844, 1119, 1589, 1680
VspI ATTAAT 1 cut(s) 324
XagI CCTNNNNNAGG 1 cut(s) 1538
XapI RAATTY 2 cut(s) 543, 1604
XmaJI CCTAGG 1 cut(s) 520
XmiI GTMKAC 1 cut(s) 435
XspI CTAG 4 cut(s) 521, 584, 816, 828
ZrmI AGTACT 1 cut(s) 1403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.