Rorug05G0537400

nucleobase-ascorbate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0007574
Physical Location & Seq
Reverse (-)
72625940 .. 72629162
3223 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0537400.1

Sequence Viewer

Length: 963 bp
ATGTGGAGGAGTGGGTGGAGAACAACCAGTGTTGTGCTCAAGGATTTGGTGCACCGTGGAGGACCCAGAAGCCCAAACCCATGTGCTGTGTTTGGTTTGAGGCGTTTTGGGAATGATGAGGAACAATGTGGGTTTTTGAATTCTCCTGGAAAGTTTCAGAGAAGGGCTGGGTTTGCTTCTTCTGGTGGGGATGTCAATGGGGAGGGTGAGAATATCAGTAAAGGTGCAGGTTTGGGAGGAATGCCCATAAGTTTTGGGGAGGCCAAGAGGCTTATGAGGCTTGTGAATGTGGAGGCTTTGAAGACTAAGCTTGGGACAGAAGGGAAAGAGGCCATTCCTTATTCTGAGTTGCTTGAGGCTTGTCAGAGCATTGGTGTGGCTAGATCGCGGGATGAGGCTGCTACTTTTGCTAGGGTGCTGGATGAGGCTGGAGTCATCCTTCTCTTCAGGGATAAGGTTCTGCTTCATCCTGATAGGGTTGTGGATCTGGTTAGAAGAGCAGTACCCCTGGCTCTGACTCCTGATAATGACCCTGTGTGGGAAGAGTTAAAGAAGATGCAGGAGAAGAAGATAGAAATTGATATCTTGGCACATAGGCATGTCCGGCGTGTACTCTGGGGTGGCCTGGGGTTGATTACAACACAGCTCGCCCTCTTTTTCAGGATGACATATTGGGATTTCTCATGGGATGTGGTTGAGCCACTTGCGTATTTCACCACAACAACTTGCATTGGCATAGGCTATGCGTACTTTTTGATTACTTCAAGAGATCCGACTTACCAAGACTTGATGAAGAGGCTTTTTCTCCGGAAGCAGAGGAAACTTATCAAGAAGCAGAACTTTGATGTTGAGAGATTCAAGGAGATACAGAGAAAATACGATACAACTCTACACGCCAGCACCTCAATCAAGAACCGGATCGGCATGGATGTGGAGCTGGACGATGCTTTACACAGAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Xan_ur_permease

Protein Analysis

320

Amino Acids

36.33

Weight (kDa)

9.28

Isoelectric Point (pI)

41.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MCU PF04678 131 - 288 1.9e-48 Mitochondrial calcium uniporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 218
AccII CGCG 1 cut(s) 388
AccIII TCCGGA 1 cut(s) 807
AciI CCGC 1 cut(s) 388
AclWI GGATC 3 cut(s) 492, 764, 926
AcsI RAATTY 1 cut(s) 139
AcuI CTGAAG 1 cut(s) 430
AfaI GTAC 3 cut(s) 504, 612, 749
AfiI CCNNNNNNNGG 1 cut(s) 538
AgsI TTSAA 4 cut(s) 139, 301, 765, 859
AjnI CCWGG 3 cut(s) 145, 507, 624
AluBI AGCT 3 cut(s) 310, 646, 937
AluI AGCT 3 cut(s) 310, 646, 937
Alw21I GWGCWC 2 cut(s) 39, 54
Alw44I GTGCAC 1 cut(s) 50
AlwI GGATC 3 cut(s) 492, 764, 926
Aor13HI TCCGGA 1 cut(s) 807
AoxI GGCC 3 cut(s) 261, 330, 622
ApaLI GTGCAC 1 cut(s) 50
ApeKI GCWGC 1 cut(s) 398
ApoI RAATTY 1 cut(s) 139
AspS9I GGNCC 1 cut(s) 62
AsuHPI GGTGA 2 cut(s) 218, 706
AvaII GGWCC 1 cut(s) 62
BaeGI GKGCMC 1 cut(s) 54
BbsI GAAGAC 1 cut(s) 308
Bbv12I GWGCWC 2 cut(s) 39, 54
BbvI GCAGC 1 cut(s) 385
BciT130I CCWGG 3 cut(s) 147, 509, 626
BfaI CTAG 2 cut(s) 381, 411
BfuAI ACCTGC 1 cut(s) 218
BisI GCNGC 1 cut(s) 399
BlsI GCNGC 1 cut(s) 400
Bme1390I CCNGG 3 cut(s) 147, 509, 626
Bme18I GGWCC 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 62
BmiI GGNNCC 1 cut(s) 64
BmrFI CCNGG 3 cut(s) 147, 509, 626
BmsI GCATC 2 cut(s) 546, 934
BpiI GAAGAC 1 cut(s) 308
BpmI CTGGAG 1 cut(s) 450
BpuEI CTTGAG 2 cut(s) 23, 374
BsaJI CCNNGG 3 cut(s) 55, 507, 625
BsaWI WCCGGW 2 cut(s) 807, 915
Bsc4I CCNNNNNNNGG 1 cut(s) 538
Bse1I ACTGG 1 cut(s) 27
BseAI TCCGGA 1 cut(s) 807
BseBI CCWGG 3 cut(s) 147, 509, 626
BseDI CCNNGG 3 cut(s) 55, 507, 625
BseGI GGATG 8 cut(s) 196, 397, 427, 435, 466, 669, 694, 934
BseLI CCNNNNNNNGG 1 cut(s) 538
BseMII CTCAG 1 cut(s) 336
BseNI ACTGG 1 cut(s) 27
BseRI GAGGAG 1 cut(s) 22
BseSI GKGCMC 1 cut(s) 54
BseXI GCAGC 1 cut(s) 385
BseYI CCCAGC 1 cut(s) 167
BsgI GTGCAG 1 cut(s) 246
Bsh1236I CGCG 1 cut(s) 388
BshFI GGCC 3 cut(s) 263, 332, 624
BsiHKAI GWGCWC 2 cut(s) 39, 54
BsiSI CCGG 3 cut(s) 604, 808, 916
BslFI GGGAC 1 cut(s) 328
BslI CCNNNNNNNGG 1 cut(s) 538
BsmFI GGGAC 1 cut(s) 328
BsmI GAATGC 1 cut(s) 246
BsnI GGCC 3 cut(s) 263, 332, 624
Bsp1286I GDGCHC 2 cut(s) 39, 54
Bsp13I TCCGGA 1 cut(s) 807
Bsp143I GATC 4 cut(s) 383, 484, 769, 918
BspACI CCGC 1 cut(s) 388
BspANI GGCC 3 cut(s) 263, 332, 624
BspCNI CTCAG 1 cut(s) 337
BspEI TCCGGA 1 cut(s) 807
BspFNI CGCG 1 cut(s) 388
BspLI GGNNCC 1 cut(s) 64
BspMI ACCTGC 1 cut(s) 218
BspPI GGATC 3 cut(s) 492, 764, 926
BspQI GCTCTTC 1 cut(s) 490
BsrI ACTGG 1 cut(s) 27
BssECI CCNNGG 3 cut(s) 55, 507, 625
BssMI GATC 4 cut(s) 383, 484, 769, 918
Bst2UI CCWGG 3 cut(s) 147, 509, 626
Bst4CI ACNGT 1 cut(s) 56
Bst6I CTCTTC 4 cut(s) 449, 490, 537, 788
BstC8I GCNNGC 2 cut(s) 648, 898
BstDEI CTNAG 2 cut(s) 306, 345
BstDSI CCRYGG 1 cut(s) 55
BstF5I GGATG 8 cut(s) 196, 397, 427, 435, 466, 669, 694, 934
BstFNI CGCG 1 cut(s) 388
BstKTI GATC 4 cut(s) 386, 487, 772, 921
BstMBI GATC 4 cut(s) 383, 484, 769, 918
BstMWI GCNNNNNNNGC 4 cut(s) 173, 277, 407, 604
BstNI CCWGG 3 cut(s) 147, 509, 626
BstNSI RCATGY 1 cut(s) 602
BstSCI CCNGG 3 cut(s) 145, 507, 624
BstSLI GKGCMC 1 cut(s) 54
BstUI CGCG 1 cut(s) 388
BstV1I GCAGC 1 cut(s) 385
BstV2I GAAGAC 1 cut(s) 308
BstX2I RGATCY 2 cut(s) 484, 769
BstYI RGATCY 2 cut(s) 484, 769
BsuRI GGCC 3 cut(s) 263, 332, 624
BtgI CCRYGG 1 cut(s) 55
BtsCI GGATG 8 cut(s) 196, 397, 427, 435, 466, 669, 694, 934
BtsIMutI CAGTG 1 cut(s) 34
BveI ACCTGC 1 cut(s) 218
Cac8I GCNNGC 2 cut(s) 648, 898
Cfr13I GGNCC 1 cut(s) 62
Csp6I GTAC 3 cut(s) 503, 611, 748
CviAII CATG 4 cut(s) 81, 599, 684, 925
CviQI GTAC 3 cut(s) 503, 611, 748
DdeI CTNAG 2 cut(s) 306, 345
DpnI GATC 4 cut(s) 385, 486, 771, 920
DpnII GATC 4 cut(s) 383, 484, 769, 918
Eam1104I CTCTTC 4 cut(s) 449, 490, 537, 788
EarI CTCTTC 4 cut(s) 449, 490, 537, 788
Eco32I GATATC 1 cut(s) 583
Eco47I GGWCC 1 cut(s) 62
Eco57I CTGAAG 1 cut(s) 430
EcoO109I RGGNCCY 1 cut(s) 62
EcoRI GAATTC 1 cut(s) 139
EcoRII CCWGG 3 cut(s) 145, 507, 624
EcoRV GATATC 1 cut(s) 583
FaeI CATG 4 cut(s) 84, 602, 687, 928
FalI AAGNNNNNCTT 2 cut(s) 824, 856
FaqI GGGAC 1 cut(s) 328
FatI CATG 4 cut(s) 80, 598, 683, 924
FauI CCCGC 1 cut(s) 381
Fnu4HI GCNGC 1 cut(s) 399
FokI GGATG 8 cut(s) 203, 404, 422, 434, 453, 676, 701, 941
Fsp4HI GCNGC 1 cut(s) 399
FspBI CTAG 2 cut(s) 381, 411
GluI GCNGC 1 cut(s) 399
GsaI CCCAGC 1 cut(s) 171
GsuI CTGGAG 1 cut(s) 450
HaeIII GGCC 3 cut(s) 263, 332, 624
HapII CCGG 3 cut(s) 604, 808, 916
Hin1II CATG 4 cut(s) 84, 602, 687, 928
HindIII AAGCTT 1 cut(s) 308
HinfI GANTC 3 cut(s) 432, 517, 855
HpaII CCGG 3 cut(s) 604, 808, 916
HphI GGTGA 2 cut(s) 218, 706
Hpy166II GTNNAC 2 cut(s) 52, 611
Hpy188I TCNGA 5 cut(s) 159, 346, 366, 516, 774
Hpy188III TCNNGA 7 cut(s) 470, 521, 661, 765, 808, 829, 910
Hpy8I GTNNAC 2 cut(s) 52, 611
HpyAV CCTTC 3 cut(s) 156, 314, 449
HpyCH4III ACNGT 1 cut(s) 56
HpyCH4V TGCA 4 cut(s) 52, 227, 559, 729
HpyF10VI GCNNNNNNNGC 4 cut(s) 173, 277, 407, 604
HpyF3I CTNAG 2 cut(s) 306, 345
Hsp92II CATG 4 cut(s) 84, 602, 687, 928
Kpn2I TCCGGA 1 cut(s) 807
Kzo9I GATC 4 cut(s) 383, 484, 769, 918
LguI GCTCTTC 1 cut(s) 490
LmnI GCTCC 1 cut(s) 934
Lsp1109I GCAGC 1 cut(s) 385
LweI GCATC 2 cut(s) 546, 934
MaeI CTAG 2 cut(s) 381, 411
MalI GATC 4 cut(s) 385, 486, 771, 920
MboI GATC 4 cut(s) 383, 484, 769, 918
MboII GAAGA 9 cut(s) 171, 313, 436, 507, 554, 565, 577, 580, 805
MflI RGATCY 2 cut(s) 484, 769
MhlI GDGCHC 2 cut(s) 39, 54
MluCI AATT 2 cut(s) 139, 576
MlyI GAGTC 2 cut(s) 441, 511
MmeI TCCRAC 1 cut(s) 797
MroI TCCGGA 1 cut(s) 807
MseI TTAA 2 cut(s) 548, 961
MslI CAYNNNNRTG 3 cut(s) 374, 597, 929
MspI CCGG 3 cut(s) 604, 808, 916
MspR9I CCNGG 3 cut(s) 147, 509, 626
Mva1269I GAATGC 1 cut(s) 246
MvaI CCWGG 3 cut(s) 147, 509, 626
MvnI CGCG 1 cut(s) 388
MwoI GCNNNNNNNGC 4 cut(s) 173, 277, 407, 604
NdeII GATC 4 cut(s) 383, 484, 769, 918
NlaIII CATG 4 cut(s) 84, 602, 687, 928
NlaIV GGNNCC 1 cut(s) 64
NspI RCATGY 1 cut(s) 602
PciSI GCTCTTC 1 cut(s) 490
PctI GAATGC 1 cut(s) 246
PfeI GAWTC 1 cut(s) 855
PfoI TCCNGGA 1 cut(s) 145
PkrI GCNGC 1 cut(s) 400
PleI GAGTC 2 cut(s) 440, 511
PpsI GAGTC 2 cut(s) 440, 511
PpuMI RGGWCCY 1 cut(s) 62
Psp5II RGGWCCY 1 cut(s) 62
Psp6I CCWGG 3 cut(s) 145, 507, 624
PspFI CCCAGC 1 cut(s) 167
PspGI CCWGG 3 cut(s) 145, 507, 624
PspN4I GGNNCC 1 cut(s) 64
PspPI GGNCC 1 cut(s) 62
PspPPI RGGWCCY 1 cut(s) 62
PsuI RGATCY 2 cut(s) 484, 769
RsaI GTAC 3 cut(s) 504, 612, 749
RsaNI GTAC 3 cut(s) 503, 611, 748
RseI CAYNNNNRTG 3 cut(s) 374, 597, 929
SapI GCTCTTC 1 cut(s) 490
SaqAI TTAA 2 cut(s) 548, 961
SatI GCNGC 1 cut(s) 399
Sau3AI GATC 4 cut(s) 383, 484, 769, 918
Sau96I GGNCC 1 cut(s) 62
SchI GAGTC 2 cut(s) 441, 511
ScrFI CCNGG 3 cut(s) 147, 509, 626
SduI GDGCHC 2 cut(s) 39, 54
SetI ASST 7 cut(s) 226, 232, 312, 459, 648, 905, 939
SfaNI GCATC 2 cut(s) 546, 934
SinI GGWCC 1 cut(s) 62
SmiMI CAYNNNNRTG 3 cut(s) 374, 597, 929
SmlI CTYRAG 2 cut(s) 38, 353
SmoI CTYRAG 2 cut(s) 38, 353
Sse9I AATT 2 cut(s) 139, 576
SsiI CCGC 1 cut(s) 388
SspMI CTAG 2 cut(s) 381, 411
StyD4I CCNGG 3 cut(s) 145, 507, 624
TaaI ACNGT 1 cut(s) 56
TasI AATT 2 cut(s) 139, 576
TatI WGTACW 1 cut(s) 610
TfiI GAWTC 1 cut(s) 855
Tru1I TTAA 2 cut(s) 548, 961
Tru9I TTAA 2 cut(s) 548, 961
TscAI CASTG 1 cut(s) 34
TseI GCWGC 1 cut(s) 398
TspDTI ATGAA 2 cut(s) 455, 806
TspRI CASTG 1 cut(s) 34
VneI GTGCAC 1 cut(s) 50
VpaK11BI GGWCC 1 cut(s) 62
XapI RAATTY 1 cut(s) 139
XceI RCATGY 1 cut(s) 602
XspI CTAG 2 cut(s) 381, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.