Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005720.1

Orthogroup ID

OG0007574

Physical Location & Seq

Genomic Coordinates Forward (+)

39719 .. 46423

Gene Structure 6705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005720.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1446 bp

atggcggcacaaaaagccgatgacttccagccacatccggtgaaggagcagcttcccggcgtcgacttctgcatgacctcctctcctccttggcctgaagccatacttctgggatttcagaactttcttgttatgttgggcaccaatgtgttcatccccaccgtgcttgtgcctgtaatgggtggtggtgatgtggagaaggcagaagtgattgatactatgctctttgtcgctggcattaatacactgttacagacttggtttgggactcgtctccctgtggtgatgggggcttcatacgctttcatcatccctgctctctccattgctcattccaggaggttcagtgtattcatagacccccaccagaggttcagagaaactatgaaagcaatacaaggagcgctcataattgcatcattcttgcaaatgatccttggctttttgggatttgcgagaatttttgtgaggtatcttagtcctctctcttctgttcctctagtgactcttaccggactggggttctctgtacttggttttcctttgttggcaaattgtgttgaagttggattaccggccttagttatattgcttcttctatcacagtatgcctccacaatgaagttaaagataccaatatttgttcgatttgcggtactattcactgttgcaatagtatgggtgtacgcagtaattttgactgcagctggtgcttatgatcatagatcccctagaactcaaactagctgccgcactgatcgttctgggcttgtcagggctgctccttgggtaagggttccctatccattccaatgggggcggccggattttaatgctggatatactcttgcaattatggctgctgcttttgttgccatgattgagtccataggtgtattcattgctgcatcaagatatgggagtgccacccctccaccaccttctgttctgagtcgaggaaagtttggggctattcttgcatctataccacttccaattgtggcagctctgtattgtgttctctatgcctatgttgtttctgctggtcttggtttattgcagttctgcaaccttaacagctttaggtcaaagttcatcattggtttttctctcttcatgggtctttctgtgcctcagtactttcatgactacatcttaacttctggtcatggccctcttcacacacatcaaatctggttcaacaacattgtgcaagtaattttctcttctgctgcaactgtagcaatcatagtgtctctcttcttggacctcaccatgggccgtggacacagttctactaggcgggacagtggccgacactgccttcaaaccccagaaaccaccaccgcccaccttgaagatcttaactccaggagtccagaaccggcggccccgcccccagaaccggccggaaaatatccgaaccggccaccggaatcttcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Xan_ur_permease

Protein Analysis

481

Amino Acids

52.41

Weight (kDa)

9.22

Isoelectric Point (pI)

43.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49960
fragaria_vesca	FvH4_2g03650 FvH4_2g03650 FvH4_2g03650 FvH4_2g03650 FvH4_2g03650 FvH4_2g03650
malus_domestica	MD05G1102000.v1.1 MD10G1107600.v1.1
prunus_persica	Prupe.8G146600_v2.0.a1 Prupe.8G146600_v2.0.a1 Prupe.8G146600_v2.0.a1
pyrus_communis	pycom05g10020 pycom10g09250
rosa_chinensis	RchiOBHm_Chr6g0252651
rosa_laevigata	RLG00000015078
rosa_multiflora	Rmu_sc0004969.1_g000002 Rmu_sc0005720.1_g000010
rosa_roxburghii	Rroxscaffold_7G00212500
rosa_rugosa	Rorug05G0537300 Rorug05G0537400
rosa_samantha	Rh6AG054000 Rh6DG042100
rosa_wichuraiana	Rw6G004860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	140
AccI	GTMKAC	1 cut(s)	63
AciI	CCGC	8 cut(s)	5, 653, 751, 820, 1303, 1347, 1388, 1394
AclWI	GGATC	2 cut(s)	427, 720
AcoI	YGGCCR	4 cut(s)	821, 1312, 1407, 1427
AcsI	RAATTY	1 cut(s)	459
AcuI	CTGAAG	1 cut(s)	117
AcyI	GRCGYC	1 cut(s)	60
AfaI	GTAC	4 cut(s)	531, 657, 686, 1139
AfeI	AGCGCT	1 cut(s)	405
AfiI	CCNNNNNNNGG	6 cut(s)	179, 369, 519, 1276, 1405, 1432
AgsI	TTSAA	4 cut(s)	563, 1201, 1328, 1358
AjnI	CCWGG	2 cut(s)	335, 1370
AleI	CACNNNNGTG	1 cut(s)	146
AluBI	AGCT	5 cut(s)	52, 707, 747, 1007, 1080
AluI	AGCT	5 cut(s)	52, 707, 747, 1007, 1080
Alw26I	GTCTC	2 cut(s)	278, 1260
AlwI	GGATC	2 cut(s)	427, 720
Aor51HI	AGCGCT	1 cut(s)	405
AoxI	GGCC	9 cut(s)	92, 576, 821, 1171, 1279, 1312, 1389, 1407, 1427
ApeKI	GCWGC	9 cut(s)	49, 704, 747, 779, 860, 863, 905, 1004, 1232
ApoI	RAATTY	1 cut(s)	459
AseI	ATTAAT	1 cut(s)	240
AspLEI	GCGC	1 cut(s)	406
AspS9I	GGNCC	4 cut(s)	1172, 1267, 1279, 1390
AsuC2I	CCSGG	1 cut(s)	57
AsuHPI	GGTGA	4 cut(s)	52, 200, 295, 1264
AvaII	GGWCC	1 cut(s)	1267
BaeGI	GKGCMC	1 cut(s)	143
BanI	GGYRCC	1 cut(s)	140
BarI	GAAGNNNNNNTAC	2 cut(s)	555, 587
BbvI	GCAGC	9 cut(s)	61, 716, 734, 766, 847, 850, 892, 1016, 1219
BccI	CCATC	1 cut(s)	280
BceAI	ACGGC	1 cut(s)	1266
BciT130I	CCWGG	2 cut(s)	337, 1372
BclI	TGATCA	1 cut(s)	718
BcnI	CCSGG	1 cut(s)	57
BcoDI	GTCTC	2 cut(s)	278, 1260
BfaI	CTAG	4 cut(s)	500, 732, 744, 1299
BfmI	CTRYAG	2 cut(s)	702, 1239
BfoI	RGCGCY	1 cut(s)	407
BglII	AGATCT	1 cut(s)	1360
BmcAI	AGTACT	1 cut(s)	1139
Bme1390I	CCNGG	3 cut(s)	57, 337, 1372
Bme18I	GGWCC	1 cut(s)	1267
BmgT120I	GGNCC	4 cut(s)	1172, 1267, 1279, 1390
BmiI	GGNNCC	3 cut(s)	142, 798, 1392
BmrFI	CCNGG	3 cut(s)	57, 337, 1372
BmrI	ACTGGG	1 cut(s)	527
BmsI	GCATC	3 cut(s)	425, 917, 989
BmuI	ACTGGG	1 cut(s)	527
BpmI	CTGGAG	1 cut(s)	1354
BpuMI	CCSGG	1 cut(s)	57
BsaHI	GRCGYC	1 cut(s)	60
BsaJI	CCNNGG	5 cut(s)	89, 436, 785, 1275, 1282
BsaWI	WCCGGW	3 cut(s)	37, 512, 1432
BsaXI	ACNNNNNCTCC	4 cut(s)	67, 97, 331, 361
Bsc4I	CCNNNNNNNGG	6 cut(s)	179, 369, 519, 1276, 1405, 1432
Bse118I	RCCGGY	4 cut(s)	574, 1384, 1405, 1425
Bse1I	ACTGG	1 cut(s)	522
Bse3DI	GCAATG	2 cut(s)	324, 900
BseBI	CCWGG	2 cut(s)	337, 1372
BseDI	CCNNGG	5 cut(s)	89, 436, 785, 1275, 1282
BseGI	GGATG	3 cut(s)	34, 153, 309
BseLI	CCNNNNNNNGG	6 cut(s)	179, 369, 519, 1276, 1405, 1432
BseMI	GCAATG	2 cut(s)	324, 900
BseMII	CTCAG	2 cut(s)	941, 1148
BseNI	ACTGG	1 cut(s)	522
BseRI	GAGGAG	2 cut(s)	70, 75
BseSI	GKGCMC	1 cut(s)	143
BseX3I	CGGCCG	2 cut(s)	821, 1407
BseXI	GCAGC	9 cut(s)	61, 716, 734, 766, 847, 850, 892, 1016, 1219
Bsh1285I	CGRYCG	2 cut(s)	824, 1410
BshFI	GGCC	9 cut(s)	94, 578, 823, 1173, 1281, 1314, 1391, 1409, 1429
BshNI	GGYRCC	1 cut(s)	140
BsiEI	CGRYCG	2 cut(s)	824, 1410
BslFI	GGGAC	2 cut(s)	280, 1319
BslI	CCNNNNNNNGG	6 cut(s)	179, 369, 519, 1276, 1405, 1432
BsmAI	GTCTC	2 cut(s)	278, 1260
BsmBI	CGTCTC	1 cut(s)	278
BsmFI	GGGAC	2 cut(s)	280, 1319
BsnI	GGCC	9 cut(s)	94, 578, 823, 1173, 1281, 1314, 1391, 1409, 1429
Bsp1286I	GDGCHC	1 cut(s)	143
Bsp143I	GATC	5 cut(s)	432, 718, 725, 757, 1360
Bsp19I	CCATGG	1 cut(s)	1275
BspACI	CCGC	8 cut(s)	5, 653, 751, 820, 1303, 1347, 1388, 1394
BspANI	GGCC	9 cut(s)	94, 578, 823, 1173, 1281, 1314, 1391, 1409, 1429
BspCNI	CTCAG	2 cut(s)	942, 1147
BspHI	TCATGA	2 cut(s)	1144, 1442
BspLI	GGNNCC	3 cut(s)	142, 798, 1392
BspMAI	CTGCAG	1 cut(s)	706
BspPI	GGATC	2 cut(s)	427, 720
BspT107I	GGYRCC	1 cut(s)	140
BsrDI	GCAATG	2 cut(s)	324, 900
BsrFI	RCCGGY	4 cut(s)	574, 1384, 1405, 1425
BsrI	ACTGG	1 cut(s)	522
BssAI	RCCGGY	4 cut(s)	574, 1384, 1405, 1425
BssECI	CCNNGG	5 cut(s)	89, 436, 785, 1275, 1282
BssMI	GATC	5 cut(s)	432, 718, 725, 757, 1360
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	4 cut(s)	89, 436, 785, 1275
Bst2UI	CCWGG	2 cut(s)	337, 1372
Bst4CI	ACNGT	7 cut(s)	163, 249, 606, 667, 1240, 1292, 1310
Bst6I	CTCTTC	5 cut(s)	493, 1118, 1182, 1231, 1265
BstACI	GRCGYC	1 cut(s)	60
BstAPI	GCANNNNNTGC	1 cut(s)	710
BstC8I	GCNNGC	1 cut(s)	235
BstDEI	CTNAG	4 cut(s)	476, 580, 950, 1134
BstDSI	CCRYGG	2 cut(s)	1275, 1282
BstF5I	GGATG	3 cut(s)	34, 153, 309
BstH2I	RGCGCY	1 cut(s)	407
BstHHI	GCGC	1 cut(s)	406
BstKTI	GATC	5 cut(s)	435, 721, 728, 760, 1363
BstMAI	GTCTC	2 cut(s)	278, 1260
BstMBI	GATC	5 cut(s)	432, 718, 725, 757, 1360
BstMCI	CGRYCG	2 cut(s)	824, 1410
BstMWI	GCNNNNNNNGC	8 cut(s)	14, 299, 710, 857, 872, 977, 1241, 1320
BstNI	CCWGG	2 cut(s)	337, 1372
BstSCI	CCNGG	3 cut(s)	55, 335, 1370
BstSFI	CTRYAG	2 cut(s)	702, 1239
BstSLI	GKGCMC	1 cut(s)	143
BstV1I	GCAGC	9 cut(s)	61, 716, 734, 766, 847, 850, 892, 1016, 1219
BstX2I	RGATCY	2 cut(s)	725, 1360
BstXI	CCANNNNNNTGG	2 cut(s)	109, 813
BstYI	RGATCY	2 cut(s)	725, 1360
BstZI	CGGCCG	2 cut(s)	821, 1407
BsuRI	GGCC	9 cut(s)	94, 578, 823, 1173, 1281, 1314, 1391, 1409, 1429
BtgI	CCRYGG	2 cut(s)	1275, 1282
BtsCI	GGATG	3 cut(s)	34, 153, 309
BtsI	GCAGTG	1 cut(s)	1318
BtsIMutI	CAGTG	6 cut(s)	245, 352, 663, 753, 1315, 1318
Cac8I	GCNNGC	1 cut(s)	235
CciI	TCATGA	2 cut(s)	1144, 1442
CfoI	GCGC	1 cut(s)	406
Cfr10I	RCCGGY	4 cut(s)	574, 1384, 1405, 1425
Cfr13I	GGNCC	4 cut(s)	1172, 1267, 1279, 1390
CseI	GACGC	1 cut(s)	49
Csp6I	GTAC	4 cut(s)	530, 656, 685, 1138
CspCI	CAANNNNNGTGG	2 cut(s)	148, 183
CviAII	CATG	7 cut(s)	73, 877, 1117, 1145, 1169, 1276, 1443
CviQI	GTAC	4 cut(s)	530, 656, 685, 1138
DdeI	CTNAG	4 cut(s)	476, 580, 950, 1134
DpnI	GATC	5 cut(s)	434, 720, 727, 759, 1362
DpnII	GATC	5 cut(s)	432, 718, 725, 757, 1360
EaeI	YGGCCR	4 cut(s)	821, 1312, 1407, 1427
EagI	CGGCCG	2 cut(s)	821, 1407
Eam1104I	CTCTTC	5 cut(s)	493, 1118, 1182, 1231, 1265
EarI	CTCTTC	5 cut(s)	493, 1118, 1182, 1231, 1265
EclXI	CGGCCG	2 cut(s)	821, 1407
Eco130I	CCWWGG	4 cut(s)	89, 436, 785, 1275
Eco47I	GGWCC	1 cut(s)	1267
Eco47III	AGCGCT	1 cut(s)	405
Eco52I	CGGCCG	2 cut(s)	821, 1407
Eco57I	CTGAAG	1 cut(s)	117
EcoRII	CCWGG	2 cut(s)	335, 1370
EcoT14I	CCWWGG	4 cut(s)	89, 436, 785, 1275
ErhI	CCWWGG	4 cut(s)	89, 436, 785, 1275
Esp3I	CGTCTC	1 cut(s)	278
FaeI	CATG	7 cut(s)	76, 880, 1120, 1148, 1172, 1279, 1446
FalI	AAGNNNNNCTT	2 cut(s)	90, 122
FaqI	GGGAC	2 cut(s)	280, 1319
FatI	CATG	7 cut(s)	72, 876, 1116, 1144, 1168, 1275, 1442
FauI	CCCGC	2 cut(s)	1296, 1401
FbaI	TGATCA	1 cut(s)	718
FblI	GTMKAC	1 cut(s)	63
FokI	GGATG	3 cut(s)	21, 140, 296
FspBI	CTAG	4 cut(s)	500, 732, 744, 1299
GlaI	GCGC	1 cut(s)	405
GsuI	CTGGAG	1 cut(s)	1354
HaeII	RGCGCY	1 cut(s)	407
HaeIII	GGCC	9 cut(s)	94, 578, 823, 1173, 1281, 1314, 1391, 1409, 1429
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	1 cut(s)	406
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	7 cut(s)	76, 880, 1120, 1148, 1172, 1279, 1446
Hin6I	GCGC	1 cut(s)	404
HinP1I	GCGC	1 cut(s)	404
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HinfI	GANTC	6 cut(s)	268, 505, 884, 952, 1375, 1436
HphI	GGTGA	4 cut(s)	52, 200, 295, 1264
Hpy166II	GTNNAC	3 cut(s)	64, 685, 1286
Hpy188I	TCNGA	4 cut(s)	120, 377, 951, 1422
Hpy188III	TCNNGA	4 cut(s)	912, 1145, 1379, 1443
Hpy8I	GTNNAC	3 cut(s)	64, 685, 1286
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	4 cut(s)	37, 193, 951, 1334
HpyCH4III	ACNGT	7 cut(s)	163, 249, 606, 667, 1240, 1292, 1310
HpyF10VI	GCNNNNNNNGC	8 cut(s)	14, 299, 710, 857, 872, 977, 1241, 1320
HpyF3I	CTNAG	4 cut(s)	476, 580, 950, 1134
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	7 cut(s)	76, 880, 1120, 1148, 1172, 1279, 1446
HspAI	GCGC	1 cut(s)	404
Ksp22I	TGATCA	1 cut(s)	718
Kzo9I	GATC	5 cut(s)	432, 718, 725, 757, 1360
LmnI	GCTCC	3 cut(s)	46, 401, 787
Lsp1109I	GCAGC	9 cut(s)	61, 716, 734, 766, 847, 850, 892, 1016, 1219
LweI	GCATC	3 cut(s)	425, 917, 989
MaeI	CTAG	4 cut(s)	500, 732, 744, 1299
MaeIII	GTNAC	2 cut(s)	249, 502
MalI	GATC	5 cut(s)	434, 720, 727, 759, 1362
MboI	GATC	5 cut(s)	432, 718, 725, 757, 1360
MboII	GAAGA	8 cut(s)	480, 587, 1105, 1169, 1218, 1252, 1370, 1431
MfeI	CAATTG	1 cut(s)	996
MflI	RGATCY	2 cut(s)	725, 1360
MhlI	GDGCHC	1 cut(s)	143
MluCI	AATT	7 cut(s)	411, 459, 553, 693, 852, 996, 1218
MlyI	GAGTC	5 cut(s)	262, 499, 893, 961, 1384
MmeI	TCCRAC	1 cut(s)	547
MseI	TTAA	6 cut(s)	240, 626, 831, 1074, 1157, 1365
MslI	CAYNNNNRTG	2 cut(s)	146, 811
MspA1I	CMGCKG	1 cut(s)	707
MspR9I	CCNGG	3 cut(s)	57, 337, 1372
MunI	CAATTG	1 cut(s)	996
MvaI	CCWGG	2 cut(s)	337, 1372
MwoI	GCNNNNNNNGC	8 cut(s)	14, 299, 710, 857, 872, 977, 1241, 1320
NciI	CCSGG	1 cut(s)	57
NcoI	CCATGG	1 cut(s)	1275
NdeII	GATC	5 cut(s)	432, 718, 725, 757, 1360
NlaIII	CATG	7 cut(s)	76, 880, 1120, 1148, 1172, 1279, 1446
NlaIV	GGNNCC	3 cut(s)	142, 798, 1392
NmuCI	GTSAC	1 cut(s)	502
OliI	CACNNNNGTG	1 cut(s)	146
PagI	TCATGA	2 cut(s)	1144, 1442
PfeI	GAWTC	1 cut(s)	1436
PfoI	TCCNGGA	2 cut(s)	335, 1370
PleI	GAGTC	5 cut(s)	262, 499, 892, 960, 1383
PpsI	GAGTC	5 cut(s)	262, 499, 892, 960, 1383
PshBI	ATTAAT	1 cut(s)	240
Psp6I	CCWGG	2 cut(s)	335, 1370
PspGI	CCWGG	2 cut(s)	335, 1370
PspN4I	GGNNCC	3 cut(s)	142, 798, 1392
PspPI	GGNCC	4 cut(s)	1172, 1267, 1279, 1390
PstI	CTGCAG	1 cut(s)	706
PsuI	RGATCY	2 cut(s)	725, 1360
PvuII	CAGCTG	1 cut(s)	707
RsaI	GTAC	4 cut(s)	531, 657, 686, 1139
RsaNI	GTAC	4 cut(s)	530, 656, 685, 1138
RseI	CAYNNNNRTG	2 cut(s)	146, 811
SalI	GTCGAC	1 cut(s)	62
SaqAI	TTAA	6 cut(s)	240, 626, 831, 1074, 1157, 1365
Sau3AI	GATC	5 cut(s)	432, 718, 725, 757, 1360
Sau96I	GGNCC	4 cut(s)	1172, 1267, 1279, 1390
ScaI	AGTACT	1 cut(s)	1139
SchI	GAGTC	5 cut(s)	262, 499, 893, 961, 1384
ScrFI	CCNGG	3 cut(s)	57, 337, 1372
SduI	GDGCHC	1 cut(s)	143
SfaNI	GCATC	3 cut(s)	425, 917, 989
SfcI	CTRYAG	2 cut(s)	702, 1239
SinI	GGWCC	1 cut(s)	1267
SmiMI	CAYNNNNRTG	2 cut(s)	146, 811
Sse9I	AATT	7 cut(s)	411, 459, 553, 693, 852, 996, 1218
SsiI	CCGC	8 cut(s)	5, 653, 751, 820, 1303, 1347, 1388, 1394
SspI	AATATT	1 cut(s)	639
SspMI	CTAG	4 cut(s)	500, 732, 744, 1299
StyD4I	CCNGG	3 cut(s)	55, 335, 1370
StyI	CCWWGG	4 cut(s)	89, 436, 785, 1275
TaaI	ACNGT	7 cut(s)	163, 249, 606, 667, 1240, 1292, 1310
TaqI	TCGA	3 cut(s)	63, 646, 955
TasI	AATT	7 cut(s)	411, 459, 553, 693, 852, 996, 1218
TatI	WGTACW	2 cut(s)	529, 1137
TauI	GCSGC	4 cut(s)	8, 753, 823, 1391
TfiI	GAWTC	1 cut(s)	1436
Tru1I	TTAA	6 cut(s)	240, 626, 831, 1074, 1157, 1365
Tru9I	TTAA	6 cut(s)	240, 626, 831, 1074, 1157, 1365
TscAI	CASTG	6 cut(s)	252, 352, 670, 760, 1315, 1325
TseFI	GTSAC	1 cut(s)	502
TseI	GCWGC	9 cut(s)	49, 704, 747, 779, 860, 863, 905, 1004, 1232
Tsp45I	GTSAC	1 cut(s)	502
TspRI	CASTG	6 cut(s)	252, 352, 670, 760, 1315, 1325
VpaK11BI	GGWCC	1 cut(s)	1267
VspI	ATTAAT	1 cut(s)	240
XapI	RAATTY	1 cut(s)	459
XmiI	GTMKAC	1 cut(s)	63
XspI	CTAG	4 cut(s)	500, 732, 744, 1299
ZrmI	AGTACT	1 cut(s)	1139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.