Rh6AG054000

nucleobase-ascorbate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0007574
Physical Location & Seq
Reverse (-)
7959725 .. 7964682
4958 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG054000.1

Sequence Viewer

Length: 1581 bp
ATGGCGGCACAAAAAGCCGATGACTTCCAGCCACATCCGGTGAAGGAGCAGCTTCCCGGCGTCGACTTCTGCATGACCTCCTCTCCTCCTTGGCCTGAAGCCATACTTCTGGGATTTCAGAACTTTCTTGTTATGTTGGGCACCACTGTGTTCATCCCCACCGTGCTTGTCCCTATAATGGGTGGTGGTGATGTAGAGAAGGCAGAAGTGATTGATACTGTGCTCTTTGTCGCTGGCATTAATACACTGTTACAGACTTGGTTTGGGACTCGTATCCCTGTGGTGATGGGGGCTTCATACGCTTTCATCATCCCTGCTCTCTCCATTGCTCATTCCAGGAGGTTCAGTGTATTCATAGACCCCCACCAGAGGTTCAGAGAAACTATGAAAGCAATACAAGGAGCGCTCATAATTGCATCATTCTTGCAAATGATCCTTGGCTTTTTGGGATTTGTGAGAATTTTTGGGAGGTATCTTAGTCCTCTCTCTTCTGTTCCTCTAGTGACTCTTACTGGACTGGGGTTCTTTGTACTTGGTTTTCCTTTGTTGGCAAATTGTGTTGAAGTTGGATTACCGGCCTTAGTTATATTGCTTCTTCTATCACAGTATGCCTCCACAATGAAGTTAAAGATACCAATATTTGTTCGATTTGCAGTACTATTCACTGTTGCAATAGTATGGGTGTACGCAGTAATTTTGACTGCAGCTGGTGCTTATGATCATAGATCTCCTAGAACTCAAACTAGCTGCCGCACTGATCGTTCTGGGCTTGTCAGGGCTGCTCCTTGGGTAAGGGTTCCCTATCCATTCCAATGGGGGCGGCCGGATTTTAATGCTGGATATACTCTTGCAATTATGGCTGCTGCTTTTGTTGCCATGATTGAGTCCATAGGTGTATTCATTGCTGCATCAAGATATGGGAGTGCCACCCCTCCACCATCTTCTGTTCTGAGTCGAGGTATAGGCTGGCAGGGCATAAGCACTCTTCTGAATGGCATCTTTGGCTCATTAACTGGCTCAACTGCATCAGTTGAAAATGCAGGTTTGTTGGGATTGACACGTGTTGGAAGTCGAAGAGTGATCCAAATATCAGCAGGCTTTATGTTTTTCTTCTCTGTATTAGGAAAGTTTGGGGCTATTCTTGCATCTATACCACTTCCAATTGTGGCTGCTCTGTATTGTGTTCTCTATGCCTATGTTGTTTCTGCTGGTCTTGGTTTATTGCAGTTCTGCAACCTTAACAGCTTTAGGTCAAAGTTCATCATTGGTTTTTCTCTCTTCATGGGTCTTTCTGTGCCTCAGTACTTTCATGACTACATCTTAACTTCTGGTCATGGCCCTCTTCACACACATCAAATCTGGTTCAACAACATTGTGCAAGTAATTTTCTCTTCTGCTGCAACTGTAGCAATCATGGTTGCTCTCTTCTTCGACCTCACCATGGGCCGTGGACACAGTTCTACTAGGCGGGACAGTGGCCGACACTGGTGGGGAAAGTTCAGAAAATTTGACACAGATACCAGGAGCGAAGAGTTCTACTCACTTCCATACAACCTTAATAGGCATTTTCCTTCAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Xan_ur_permease

Protein Analysis

526

Amino Acids

57.68

Weight (kDa)

9.72

Isoelectric Point (pI)

35.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Xan_ur_permease PF00860 34 - 436 2.8e-64 Permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1031
AccB1I GGYRCC 1 cut(s) 140
AccI GTMKAC 1 cut(s) 63
AciI CCGC 4 cut(s) 5, 751, 820, 1468
AclWI GGATC 2 cut(s) 427, 1075
AcoI YGGCCR 2 cut(s) 821, 1477
AcsI RAATTY 2 cut(s) 459, 1505
AcuI CTGAAG 2 cut(s) 117, 1557
AcvI CACGTG 1 cut(s) 1061
AcyI GRCGYC 1 cut(s) 60
AfaI GTAC 4 cut(s) 531, 657, 686, 1304
AfeI AGCGCT 1 cut(s) 405
AfiI CCNNNNNNNGG 4 cut(s) 178, 179, 369, 1441
AflIII ACRYGT 2 cut(s) 1058, 1060
AgsI TTSAA 3 cut(s) 563, 1034, 1366
AjnI CCWGG 2 cut(s) 335, 1520
AleI CACNNNNGTG 1 cut(s) 146
AluBI AGCT 4 cut(s) 52, 707, 747, 1245
AluI AGCT 4 cut(s) 52, 707, 747, 1245
Alw21I GWGCWC 1 cut(s) 225
AlwI GGATC 2 cut(s) 427, 1075
Aor51HI AGCGCT 1 cut(s) 405
AoxI GGCC 6 cut(s) 92, 576, 821, 1336, 1444, 1477
ApeKI GCWGC 9 cut(s) 49, 704, 747, 779, 860, 863, 905, 1169, 1397
ApoI RAATTY 2 cut(s) 459, 1505
AseI ATTAAT 1 cut(s) 240
AspLEI GCGC 1 cut(s) 406
AspS9I GGNCC 2 cut(s) 1337, 1444
AsuC2I CCSGG 1 cut(s) 57
AsuHPI GGTGA 4 cut(s) 52, 200, 295, 1429
BaeGI GKGCMC 1 cut(s) 143
BanI GGYRCC 1 cut(s) 140
BarI GAAGNNNNNNTAC 2 cut(s) 555, 587
BbrPI CACGTG 1 cut(s) 1061
Bbv12I GWGCWC 1 cut(s) 225
BbvI GCAGC 9 cut(s) 61, 716, 734, 766, 847, 850, 892, 1156, 1384
BccI CCATC 2 cut(s) 280, 946
BceAI ACGGC 1 cut(s) 1431
BciT130I CCWGG 2 cut(s) 337, 1522
BciVI GTATCC 1 cut(s) 284
BclI TGATCA 1 cut(s) 718
BcnI CCSGG 1 cut(s) 57
BfaI CTAG 4 cut(s) 500, 732, 744, 1464
BfmI CTRYAG 2 cut(s) 702, 1404
BfoI RGCGCY 1 cut(s) 407
BfuAI ACCTGC 1 cut(s) 1031
BfuI GTATCC 1 cut(s) 284
BglII AGATCT 1 cut(s) 725
BmcAI AGTACT 2 cut(s) 657, 1304
Bme1390I CCNGG 3 cut(s) 57, 337, 1522
BmgT120I GGNCC 2 cut(s) 1337, 1444
BmiI GGNNCC 2 cut(s) 142, 798
BmrFI CCNGG 3 cut(s) 57, 337, 1522
BmrI ACTGGG 1 cut(s) 527
BmsI GCATC 5 cut(s) 425, 917, 1005, 1034, 1154
BmuI ACTGGG 1 cut(s) 527
BplI GAGNNNNNCTC 2 cut(s) 1523, 1555
BpuMI CCSGG 1 cut(s) 57
BsaAI YACGTR 1 cut(s) 1061
BsaHI GRCGYC 1 cut(s) 60
BsaJI CCNNGG 5 cut(s) 89, 436, 785, 1440, 1447
BsaWI WCCGGW 1 cut(s) 37
BsaXI ACNNNNNCTCC 4 cut(s) 67, 97, 331, 361
Bsc4I CCNNNNNNNGG 4 cut(s) 178, 179, 369, 1441
Bse118I RCCGGY 1 cut(s) 574
Bse1I ACTGG 4 cut(s) 517, 522, 1018, 1490
Bse3DI GCAATG 2 cut(s) 324, 900
BseBI CCWGG 2 cut(s) 337, 1522
BseDI CCNNGG 5 cut(s) 89, 436, 785, 1440, 1447
BseGI GGATG 3 cut(s) 34, 153, 309
BseLI CCNNNNNNNGG 4 cut(s) 178, 179, 369, 1441
BseMI GCAATG 2 cut(s) 324, 900
BseMII CTCAG 2 cut(s) 941, 1313
BseNI ACTGG 4 cut(s) 517, 522, 1018, 1490
BseRI GAGGAG 2 cut(s) 70, 75
BseSI GKGCMC 1 cut(s) 143
BseX3I CGGCCG 1 cut(s) 821
BseXI GCAGC 9 cut(s) 61, 716, 734, 766, 847, 850, 892, 1156, 1384
Bsh1285I CGRYCG 1 cut(s) 824
BshFI GGCC 6 cut(s) 94, 578, 823, 1338, 1446, 1479
BshNI GGYRCC 1 cut(s) 140
BsiEI CGRYCG 1 cut(s) 824
BsiHKAI GWGCWC 1 cut(s) 225
BsiSI CCGG 4 cut(s) 38, 57, 575, 824
BslFI GGGAC 3 cut(s) 155, 280, 1484
BslI CCNNNNNNNGG 4 cut(s) 178, 179, 369, 1441
BsmFI GGGAC 3 cut(s) 155, 280, 1484
BsnI GGCC 6 cut(s) 94, 578, 823, 1338, 1446, 1479
Bsp1286I GDGCHC 2 cut(s) 143, 225
Bsp143I GATC 5 cut(s) 432, 718, 725, 757, 1080
Bsp19I CCATGG 1 cut(s) 1440
BspACI CCGC 4 cut(s) 5, 751, 820, 1468
BspANI GGCC 6 cut(s) 94, 578, 823, 1338, 1446, 1479
BspCNI CTCAG 2 cut(s) 942, 1312
BspHI TCATGA 1 cut(s) 1309
BspLI GGNNCC 2 cut(s) 142, 798
BspMAI CTGCAG 1 cut(s) 706
BspMI ACCTGC 1 cut(s) 1031
BspPI GGATC 2 cut(s) 427, 1075
BspT107I GGYRCC 1 cut(s) 140
BsrDI GCAATG 2 cut(s) 324, 900
BsrFI RCCGGY 1 cut(s) 574
BsrI ACTGG 4 cut(s) 517, 522, 1018, 1490
BssAI RCCGGY 1 cut(s) 574
BssECI CCNNGG 5 cut(s) 89, 436, 785, 1440, 1447
BssMI GATC 5 cut(s) 432, 718, 725, 757, 1080
BssNI GRCGYC 1 cut(s) 60
BssT1I CCWWGG 4 cut(s) 89, 436, 785, 1440
Bst2UI CCWGG 2 cut(s) 337, 1522
Bst4CI ACNGT 9 cut(s) 148, 163, 220, 249, 606, 667, 1405, 1457, 1475
Bst6I CTCTTC 8 cut(s) 493, 990, 1069, 1283, 1347, 1396, 1430, 1524
BstACI GRCGYC 1 cut(s) 60
BstAPI GCANNNNNTGC 1 cut(s) 710
BstBAI YACGTR 1 cut(s) 1061
BstC8I GCNNGC 3 cut(s) 235, 968, 1096
BstDEI CTNAG 4 cut(s) 476, 580, 950, 1299
BstDSI CCRYGG 2 cut(s) 1440, 1447
BstF5I GGATG 3 cut(s) 34, 153, 309
BstH2I RGCGCY 1 cut(s) 407
BstHHI GCGC 1 cut(s) 406
BstKTI GATC 5 cut(s) 435, 721, 728, 760, 1083
BstMBI GATC 5 cut(s) 432, 718, 725, 757, 1080
BstMCI CGRYCG 1 cut(s) 824
BstMWI GCNNNNNNNGC 9 cut(s) 14, 299, 710, 857, 872, 972, 1002, 1142, 1406
BstNI CCWGG 2 cut(s) 337, 1522
BstSCI CCNGG 3 cut(s) 55, 335, 1520
BstSFI CTRYAG 2 cut(s) 702, 1404
BstSLI GKGCMC 1 cut(s) 143
BstV1I GCAGC 9 cut(s) 61, 716, 734, 766, 847, 850, 892, 1156, 1384
BstX2I RGATCY 1 cut(s) 725
BstXI CCANNNNNNTGG 2 cut(s) 109, 813
BstYI RGATCY 1 cut(s) 725
BstZI CGGCCG 1 cut(s) 821
BsuI GTATCC 1 cut(s) 284
BsuRI GGCC 6 cut(s) 94, 578, 823, 1338, 1446, 1479
BtgI CCRYGG 2 cut(s) 1440, 1447
BtsCI GGATG 3 cut(s) 34, 153, 309
BtsIMutI CAGTG 7 cut(s) 144, 245, 352, 663, 753, 1480, 1483
BveI ACCTGC 1 cut(s) 1031
Cac8I GCNNGC 3 cut(s) 235, 968, 1096
CciI TCATGA 1 cut(s) 1309
CfoI GCGC 1 cut(s) 406
Cfr10I RCCGGY 1 cut(s) 574
Cfr13I GGNCC 2 cut(s) 1337, 1444
CseI GACGC 1 cut(s) 49
Csp6I GTAC 4 cut(s) 530, 656, 685, 1303
CspCI CAANNNNNGTGG 2 cut(s) 148, 183
CviAII CATG 7 cut(s) 73, 877, 1282, 1310, 1334, 1414, 1441
CviQI GTAC 4 cut(s) 530, 656, 685, 1303
DdeI CTNAG 4 cut(s) 476, 580, 950, 1299
DpnI GATC 5 cut(s) 434, 720, 727, 759, 1082
DpnII GATC 5 cut(s) 432, 718, 725, 757, 1080
EaeI YGGCCR 2 cut(s) 821, 1477
EagI CGGCCG 1 cut(s) 821
Eam1104I CTCTTC 8 cut(s) 493, 990, 1069, 1283, 1347, 1396, 1430, 1524
EarI CTCTTC 8 cut(s) 493, 990, 1069, 1283, 1347, 1396, 1430, 1524
EclXI CGGCCG 1 cut(s) 821
Eco130I CCWWGG 4 cut(s) 89, 436, 785, 1440
Eco47III AGCGCT 1 cut(s) 405
Eco52I CGGCCG 1 cut(s) 821
Eco57I CTGAAG 2 cut(s) 117, 1557
Eco72I CACGTG 1 cut(s) 1061
EcoRII CCWGG 2 cut(s) 335, 1520
EcoT14I CCWWGG 4 cut(s) 89, 436, 785, 1440
ErhI CCWWGG 4 cut(s) 89, 436, 785, 1440
FaeI CATG 7 cut(s) 76, 880, 1285, 1313, 1337, 1417, 1444
FalI AAGNNNNNCTT 2 cut(s) 90, 122
FaqI GGGAC 3 cut(s) 155, 280, 1484
FatI CATG 7 cut(s) 72, 876, 1281, 1309, 1333, 1413, 1440
FauI CCCGC 1 cut(s) 1461
FbaI TGATCA 1 cut(s) 718
FblI GTMKAC 1 cut(s) 63
FokI GGATG 3 cut(s) 21, 140, 296
FspBI CTAG 4 cut(s) 500, 732, 744, 1464
GlaI GCGC 1 cut(s) 405
HaeII RGCGCY 1 cut(s) 407
HaeIII GGCC 6 cut(s) 94, 578, 823, 1338, 1446, 1479
HapII CCGG 4 cut(s) 38, 57, 575, 824
HgaI GACGC 1 cut(s) 49
HhaI GCGC 1 cut(s) 406
Hin1I GRCGYC 1 cut(s) 60
Hin1II CATG 7 cut(s) 76, 880, 1285, 1313, 1337, 1417, 1444
Hin6I GCGC 1 cut(s) 404
HinP1I GCGC 1 cut(s) 404
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HinfI GANTC 4 cut(s) 268, 505, 884, 952
HpaII CCGG 4 cut(s) 38, 57, 575, 824
HphI GGTGA 4 cut(s) 52, 200, 295, 1429
Hpy166II GTNNAC 3 cut(s) 64, 685, 1451
Hpy188I TCNGA 6 cut(s) 120, 377, 951, 990, 1502, 1580
Hpy188III TCNNGA 2 cut(s) 912, 1310
Hpy8I GTNNAC 3 cut(s) 64, 685, 1451
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 3 cut(s) 37, 193, 1581
HpyCH4III ACNGT 9 cut(s) 148, 163, 220, 249, 606, 667, 1405, 1457, 1475
HpyCH4IV ACGT 1 cut(s) 1060
HpyF10VI GCNNNNNNNGC 9 cut(s) 14, 299, 710, 857, 872, 972, 1002, 1142, 1406
HpyF3I CTNAG 4 cut(s) 476, 580, 950, 1299
HpySE526I ACGT 1 cut(s) 1060
Hsp92I GRCGYC 1 cut(s) 60
Hsp92II CATG 7 cut(s) 76, 880, 1285, 1313, 1337, 1417, 1444
HspAI GCGC 1 cut(s) 404
Ksp22I TGATCA 1 cut(s) 718
Kzo9I GATC 5 cut(s) 432, 718, 725, 757, 1080
LmnI GCTCC 4 cut(s) 46, 401, 787, 1524
Lsp1109I GCAGC 9 cut(s) 61, 716, 734, 766, 847, 850, 892, 1156, 1384
LweI GCATC 5 cut(s) 425, 917, 1005, 1034, 1154
MaeI CTAG 4 cut(s) 500, 732, 744, 1464
MaeII ACGT 1 cut(s) 1060
MaeIII GTNAC 2 cut(s) 249, 502
MalI GATC 5 cut(s) 434, 720, 727, 759, 1082
MboI GATC 5 cut(s) 432, 718, 725, 757, 1080
MfeI CAATTG 1 cut(s) 1161
MflI RGATCY 1 cut(s) 725
MhlI GDGCHC 2 cut(s) 143, 225
MluCI AATT 8 cut(s) 411, 459, 553, 693, 852, 1161, 1383, 1505
MlyI GAGTC 4 cut(s) 262, 499, 893, 961
MmeI TCCRAC 2 cut(s) 547, 1045
MseI TTAA 7 cut(s) 240, 626, 831, 1010, 1239, 1322, 1557
MslI CAYNNNNRTG 2 cut(s) 146, 811
MspA1I CMGCKG 1 cut(s) 707
MspI CCGG 4 cut(s) 38, 57, 575, 824
MspR9I CCNGG 3 cut(s) 57, 337, 1522
MunI CAATTG 1 cut(s) 1161
MvaI CCWGG 2 cut(s) 337, 1522
MwoI GCNNNNNNNGC 9 cut(s) 14, 299, 710, 857, 872, 972, 1002, 1142, 1406
NciI CCSGG 1 cut(s) 57
NcoI CCATGG 1 cut(s) 1440
NdeII GATC 5 cut(s) 432, 718, 725, 757, 1080
NlaIII CATG 7 cut(s) 76, 880, 1285, 1313, 1337, 1417, 1444
NlaIV GGNNCC 2 cut(s) 142, 798
NmuCI GTSAC 1 cut(s) 502
OliI CACNNNNGTG 1 cut(s) 146
PagI TCATGA 1 cut(s) 1309
PfoI TCCNGGA 1 cut(s) 335
PleI GAGTC 4 cut(s) 262, 499, 892, 960
PmaCI CACGTG 1 cut(s) 1061
PmlI CACGTG 1 cut(s) 1061
PpsI GAGTC 4 cut(s) 262, 499, 892, 960
Ppu21I YACGTR 1 cut(s) 1061
PshBI ATTAAT 1 cut(s) 240
Psp6I CCWGG 2 cut(s) 335, 1520
PspCI CACGTG 1 cut(s) 1061
PspGI CCWGG 2 cut(s) 335, 1520
PspN4I GGNNCC 2 cut(s) 142, 798
PspPI GGNCC 2 cut(s) 1337, 1444
PstI CTGCAG 1 cut(s) 706
PsuI RGATCY 1 cut(s) 725
PvuII CAGCTG 1 cut(s) 707
RsaI GTAC 4 cut(s) 531, 657, 686, 1304
RsaNI GTAC 4 cut(s) 530, 656, 685, 1303
RseI CAYNNNNRTG 2 cut(s) 146, 811
SalI GTCGAC 1 cut(s) 62
SaqAI TTAA 7 cut(s) 240, 626, 831, 1010, 1239, 1322, 1557
Sau3AI GATC 5 cut(s) 432, 718, 725, 757, 1080
Sau96I GGNCC 2 cut(s) 1337, 1444
ScaI AGTACT 2 cut(s) 657, 1304
SchI GAGTC 4 cut(s) 262, 499, 893, 961
ScrFI CCNGG 3 cut(s) 57, 337, 1522
SduI GDGCHC 2 cut(s) 143, 225
SfaNI GCATC 5 cut(s) 425, 917, 1005, 1034, 1154
SfcI CTRYAG 2 cut(s) 702, 1404
SmiMI CAYNNNNRTG 2 cut(s) 146, 811
Sse9I AATT 8 cut(s) 411, 459, 553, 693, 852, 1161, 1383, 1505
SsiI CCGC 4 cut(s) 5, 751, 820, 1468
SspI AATATT 1 cut(s) 639
SspMI CTAG 4 cut(s) 500, 732, 744, 1464
StyD4I CCNGG 3 cut(s) 55, 335, 1520
StyI CCWWGG 4 cut(s) 89, 436, 785, 1440
TaaI ACNGT 9 cut(s) 148, 163, 220, 249, 606, 667, 1405, 1457, 1475
TaiI ACGT 1 cut(s) 1063
TaqI TCGA 5 cut(s) 63, 646, 955, 1072, 1431
TasI AATT 8 cut(s) 411, 459, 553, 693, 852, 1161, 1383, 1505
TatI WGTACW 3 cut(s) 529, 655, 1302
TauI GCSGC 3 cut(s) 8, 753, 823
Tru1I TTAA 7 cut(s) 240, 626, 831, 1010, 1239, 1322, 1557
Tru9I TTAA 7 cut(s) 240, 626, 831, 1010, 1239, 1322, 1557
TscAI CASTG 7 cut(s) 151, 252, 352, 670, 760, 1480, 1490
TseFI GTSAC 1 cut(s) 502
TseI GCWGC 9 cut(s) 49, 704, 747, 779, 860, 863, 905, 1169, 1397
Tsp45I GTSAC 1 cut(s) 502
TspRI CASTG 7 cut(s) 151, 252, 352, 670, 760, 1480, 1490
VspI ATTAAT 1 cut(s) 240
XapI RAATTY 2 cut(s) 459, 1505
XmiI GTMKAC 1 cut(s) 63
XspI CTAG 4 cut(s) 500, 732, 744, 1464
ZrmI AGTACT 2 cut(s) 657, 1304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.