Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0014451

Physical Location & Seq

Genomic Coordinates Forward (+)

3268610 .. 3271772

Gene Structure 3163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g04150.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGACCACTTCTCTACTTTGTCCAAACACCTTTCTTCATGGCACCAAGATCTTCTCTTCTCCTCCACACAGAAGGGTCTCACCTCCCAGAAGCTTCAAATCCGTAGCTCCCATGGCTTCTAACAACGTTCCCAAGAAGTTCAGGGAAGAGAACCTCAAAGATGGATTGATGGATAATTATAAGAATGTGCCGCAATATCTGTATGGGCTTTCTCCTTCCCAAATGGACATGTTTATGACTGAAGACAATCCGGCCAGGCGCCAGGCCGAAAGTGTTACAGAGAATAGCATTTCATCCGCCAATAACTATTTGAACAATGGAGGGATGTGGAGTATGTCGGGCATGGATGAAAAGGGCCCTGCGAAATATAGTATGAGTGTGAGCATGTACCGTGGTGGTGCAAGAGGATACGGAAGACCCCGAACAGCTCCTCCGGATTTGCCTTCTTTACTATTAGATGCTCGGATTTGCTACCTGGGAATGCCGATTGTGCCAGCAGTAACTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGATTATGATAACCCCTCAAAGCCTATATATTTGTACATAAATTCTTCTGGAACACAGAATGAGAAGATGGAGAGCGTTGGATCTGAAACTGAGGCATATGCCATTGCTGACATGATGAAATATGTCAAAGCAGATGTGTATACGGTGAATTGTGGCATGGCCTATGGGCAAGCAGCACTGCTTCTGTCACTTGGAACAAAGGGTTTTCGTGCTGTGCAGCCGAACTCCTCCACAAAGTTATATCTGCCTAAAGTCAGCAGGTCAAGTGGATCAGTTATTGACATGTGGATTAAGGCCAAGGAACTGGATGCAAACACTGAGTATTACATTGAGCTGCTTGCGAAAGGAACAGGGAAATCCAAGGAAGAAATTGCTAAAGACATCCGGCGGCCTAAGTATTTACAAGGACAAGAAGCGATAGAATACGGGCTTGTTGACAAGATAATTGATTCGCGTGATTCTGCATTTGAGAAACGGAACTACGATGAGATGCTTACTCAATCAAGAGCTATGAGGAGAGGGCCACAAGCATCACCCTCTGGGTTTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009368 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009840 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022613 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

362

Amino Acids

40.3

Weight (kDa)

9.04

Isoelectric Point (pI)

52.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLP_protease	PF00574	148 - 329	1.4e-39	Clp protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49970
fragaria_vesca	FvH4_2g04150
malus_domestica	MD05G1098400.v1.1 MD10G1104200.v1.1
prunus_persica	Prupe.8G143200_v2.0.a1
pyrus_communis	pycom05g09630 pycom10g08980
rosa_chinensis	RchiOBHm_Chr6g0253511
rosa_laevigata	RLG00000015013
rosa_multiflora	Rmu_ssc0000079.1_g000005
rosa_roxburghii	Rroxscaffold_7G00211820
rosa_rugosa	Rorug05G0544700 Rorug05G0544700
rosa_samantha	Rh6AG059800 Rh6BG053800 Rh6DG051100
rosa_wichuraiana	Rw6G005320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	180
Acc36I	ACCTGC	1 cut(s)	783
AccB1I	GGYRCC	2 cut(s)	41, 258
AccI	GTMKAC	1 cut(s)	674
AccII	CGCG	1 cut(s)	988
AccIII	TCCGGA	1 cut(s)	433
AciI	CCGC	3 cut(s)	191, 297, 922
AclI	AACGTT	1 cut(s)	126
AclWI	GGATC	2 cut(s)	622, 811
AcoI	YGGCCR	1 cut(s)	252
AcsI	RAATTY	1 cut(s)	574
AcuI	CTGAAG	1 cut(s)	261
AcyI	GRCGYC	1 cut(s)	259
AfaI	GTAC	2 cut(s)	389, 569
AflIII	ACRYGT	2 cut(s)	228, 816
AgsI	TTSAA	2 cut(s)	97, 313
AjnI	CCWGG	3 cut(s)	254, 261, 474
AloI	GAACNNNNNNTCC	2 cut(s)	415, 447
AluBI	AGCT	6 cut(s)	93, 107, 428, 508, 868, 1043
AluI	AGCT	6 cut(s)	93, 107, 428, 508, 868, 1043
Alw26I	GTCTC	1 cut(s)	82
AlwI	GGATC	2 cut(s)	622, 811
AlwNI	CAGNNNCTG	1 cut(s)	503
Aor13HI	TCCGGA	1 cut(s)	433
AoxI	GGCC	7 cut(s)	252, 264, 355, 693, 828, 923, 1055
ApaI	GGGCCC	1 cut(s)	359
ApeKI	GCWGC	3 cut(s)	707, 751, 868
ApoI	RAATTY	1 cut(s)	574
AspLEI	GCGC	1 cut(s)	261
AspS9I	GGNCC	3 cut(s)	355, 356, 1055
AsuHPI	GGTGA	3 cut(s)	72, 691, 1059
BaeGI	GKGCMC	1 cut(s)	359
BanI	GGYRCC	2 cut(s)	41, 258
BanII	GRGCYC	1 cut(s)	359
BarI	GAAGNNNNNNTAC	2 cut(s)	492, 524
BbsI	GAAGAC	2 cut(s)	249, 421
BbvI	GCAGC	3 cut(s)	719, 763, 855
BccI	CCATC	3 cut(s)	155, 163, 595
BciT130I	CCWGG	3 cut(s)	256, 263, 476
BciVI	GTATCC	1 cut(s)	401
BcoDI	GTCTC	1 cut(s)	82
BfoI	RGCGCY	1 cut(s)	262
BfuAI	ACCTGC	1 cut(s)	783
BfuI	GTATCC	1 cut(s)	401
BglII	AGATCT	1 cut(s)	48
BisI	GCNGC	5 cut(s)	191, 708, 752, 869, 923
BlsI	GCNGC	5 cut(s)	192, 709, 753, 870, 924
Bme1390I	CCNGG	3 cut(s)	256, 263, 476
BmgT120I	GGNCC	3 cut(s)	355, 356, 1055
BmiI	GGNNCC	3 cut(s)	43, 260, 357
BmrFI	CCNGG	3 cut(s)	256, 263, 476
BmsI	GCATC	4 cut(s)	448, 832, 1014, 1073
BpiI	GAAGAC	2 cut(s)	249, 421
BsaHI	GRCGYC	1 cut(s)	259
BsaI	GGTCTC	1 cut(s)	82
BsaJI	CCNNGG	5 cut(s)	111, 391, 475, 831, 894
BsaWI	WCCGGW	1 cut(s)	433
BsaXI	ACNNNNNCTCC	2 cut(s)	415, 445
Bse1I	ACTGG	1 cut(s)	843
Bse3DI	GCAATG	1 cut(s)	636
BseAI	TCCGGA	1 cut(s)	433
BseBI	CCWGG	3 cut(s)	256, 263, 476
BseDI	CCNNGG	5 cut(s)	111, 391, 475, 831, 894
BseGI	GGATG	5 cut(s)	293, 330, 352, 847, 915
BseMI	GCAATG	1 cut(s)	636
BseMII	CTCAG	4 cut(s)	495, 533, 615, 843
BseNI	ACTGG	1 cut(s)	843
BseRI	GAGGAG	4 cut(s)	51, 420, 751, 1063
BseSI	GKGCMC	1 cut(s)	359
BseXI	GCAGC	3 cut(s)	719, 763, 855
BsgI	GTGCAG	1 cut(s)	770
Bsh1236I	CGCG	1 cut(s)	988
BshFI	GGCC	7 cut(s)	254, 266, 357, 695, 830, 925, 1057
BshNI	GGYRCC	2 cut(s)	41, 258
BsiSI	CCGG	3 cut(s)	251, 434, 919
BsmAI	GTCTC	1 cut(s)	82
BsmI	GAATGC	1 cut(s)	486
BsnI	GGCC	7 cut(s)	254, 266, 357, 695, 830, 925, 1057
Bso31I	GGTCTC	1 cut(s)	82
Bsp120I	GGGCCC	1 cut(s)	355
Bsp1286I	GDGCHC	1 cut(s)	359
Bsp13I	TCCGGA	1 cut(s)	433
Bsp1407I	TGTACA	1 cut(s)	567
Bsp143I	GATC	3 cut(s)	48, 614, 803
Bsp19I	CCATGG	1 cut(s)	111
BspACI	CCGC	3 cut(s)	191, 297, 922
BspANI	GGCC	7 cut(s)	254, 266, 357, 695, 830, 925, 1057
BspCNI	CTCAG	4 cut(s)	496, 532, 616, 844
BspEI	TCCGGA	1 cut(s)	433
BspFNI	CGCG	1 cut(s)	988
BspLI	GGNNCC	3 cut(s)	43, 260, 357
BspMI	ACCTGC	1 cut(s)	783
BspPI	GGATC	2 cut(s)	622, 811
BspT107I	GGYRCC	2 cut(s)	41, 258
BspTNI	GGTCTC	1 cut(s)	82
BsrDI	GCAATG	1 cut(s)	636
BsrGI	TGTACA	1 cut(s)	567
BsrI	ACTGG	1 cut(s)	843
BssECI	CCNNGG	5 cut(s)	111, 391, 475, 831, 894
BssMI	GATC	3 cut(s)	48, 614, 803
BssNAI	GTATAC	1 cut(s)	675
BssNI	GRCGYC	1 cut(s)	259
BssT1I	CCWWGG	3 cut(s)	111, 831, 894
Bst1107I	GTATAC	1 cut(s)	675
Bst2UI	CCWGG	3 cut(s)	256, 263, 476
Bst4CI	ACNGT	2 cut(s)	392, 679
Bst6I	CTCTTC	2 cut(s)	61, 141
BstACI	GRCGYC	1 cut(s)	259
BstAUI	TGTACA	1 cut(s)	567
BstC8I	GCNNGC	3 cut(s)	495, 705, 873
BstDEI	CTNAG	5 cut(s)	504, 519, 624, 852, 927
BstDSI	CCRYGG	2 cut(s)	111, 391
BstF5I	GGATG	5 cut(s)	293, 330, 352, 847, 915
BstFNI	CGCG	1 cut(s)	988
BstH2I	RGCGCY	1 cut(s)	262
BstHHI	GCGC	1 cut(s)	261
BstKTI	GATC	3 cut(s)	51, 617, 806
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	3 cut(s)	48, 614, 803
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 490
BstNI	CCWGG	3 cut(s)	256, 263, 476
BstNSI	RCATGY	3 cut(s)	232, 388, 820
BstSCI	CCNGG	3 cut(s)	254, 261, 474
BstSLI	GKGCMC	1 cut(s)	359
BstUI	CGCG	1 cut(s)	988
BstV1I	GCAGC	3 cut(s)	719, 763, 855
BstV2I	GAAGAC	2 cut(s)	249, 421
BstX2I	RGATCY	2 cut(s)	48, 614
BstXI	CCANNNNNNTGG	1 cut(s)	838
BstYI	RGATCY	2 cut(s)	48, 614
BstZ17I	GTATAC	1 cut(s)	675
BsuI	GTATCC	1 cut(s)	401
BsuRI	GGCC	7 cut(s)	254, 266, 357, 695, 830, 925, 1057
BtgI	CCRYGG	2 cut(s)	111, 391
BtsCI	GGATG	5 cut(s)	293, 330, 352, 847, 915
BtsI	GCAGTG	1 cut(s)	710
BtsIMutI	CAGTG	2 cut(s)	710, 849
BveI	ACCTGC	1 cut(s)	783
Cac8I	GCNNGC	3 cut(s)	495, 705, 873
CaiI	CAGNNNCTG	1 cut(s)	503
CfoI	GCGC	1 cut(s)	261
Cfr13I	GGNCC	3 cut(s)	355, 356, 1055
Csp6I	GTAC	2 cut(s)	388, 568
CviAII	CATG	8 cut(s)	38, 112, 229, 343, 385, 646, 691, 817
CviQI	GTAC	2 cut(s)	388, 568
DdeI	CTNAG	5 cut(s)	504, 519, 624, 852, 927
DinI	GGCGCC	1 cut(s)	260
DpnI	GATC	3 cut(s)	50, 616, 805
DpnII	GATC	3 cut(s)	48, 614, 803
EaeI	YGGCCR	1 cut(s)	252
Eam1104I	CTCTTC	2 cut(s)	61, 141
EarI	CTCTTC	2 cut(s)	61, 141
EciI	GGCGGA	1 cut(s)	286
Eco130I	CCWWGG	3 cut(s)	111, 831, 894
Eco24I	GRGCYC	1 cut(s)	359
Eco31I	GGTCTC	1 cut(s)	82
Eco57I	CTGAAG	1 cut(s)	261
EcoO109I	RGGNCCY	2 cut(s)	355, 356
EcoRII	CCWGG	3 cut(s)	254, 261, 474
EcoT14I	CCWWGG	3 cut(s)	111, 831, 894
EcoT38I	GRGCYC	1 cut(s)	359
EgeI	GGCGCC	1 cut(s)	260
EheI	GGCGCC	1 cut(s)	260
ErhI	CCWWGG	3 cut(s)	111, 831, 894
FaeI	CATG	8 cut(s)	41, 115, 232, 346, 388, 649, 694, 820
FatI	CATG	8 cut(s)	37, 111, 228, 342, 384, 645, 690, 816
FauNDI	CATATG	1 cut(s)	631
FblI	GTMKAC	1 cut(s)	674
Fnu4HI	GCNGC	5 cut(s)	191, 708, 752, 869, 923
FokI	GGATG	5 cut(s)	280, 337, 359, 854, 902
FriOI	GRGCYC	1 cut(s)	359
Fsp4HI	GCNGC	5 cut(s)	191, 708, 752, 869, 923
GlaI	GCGC	1 cut(s)	260
GluI	GCNGC	5 cut(s)	191, 708, 752, 869, 923
HaeII	RGCGCY	1 cut(s)	262
HaeIII	GGCC	7 cut(s)	254, 266, 357, 695, 830, 925, 1057
HapII	CCGG	3 cut(s)	251, 434, 919
HhaI	GCGC	1 cut(s)	261
Hin1I	GRCGYC	1 cut(s)	259
Hin1II	CATG	8 cut(s)	41, 115, 232, 346, 388, 649, 694, 820
Hin6I	GCGC	1 cut(s)	259
HinP1I	GCGC	1 cut(s)	259
HincII	GTYRAC	1 cut(s)	970
HindII	GTYRAC	1 cut(s)	970
HindIII	AAGCTT	1 cut(s)	91
HinfI	GANTC	2 cut(s)	983, 992
HpaII	CCGG	3 cut(s)	251, 434, 919
HphI	GGTGA	3 cut(s)	72, 691, 1059
Hpy166II	GTNNAC	2 cut(s)	675, 970
Hpy188I	TCNGA	2 cut(s)	465, 619
Hpy188III	TCNNGA	3 cut(s)	434, 582, 1038
Hpy8I	GTNNAC	2 cut(s)	675, 970
HpyAV	CCTTC	3 cut(s)	66, 225, 453
HpyCH4III	ACNGT	2 cut(s)	392, 679
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	4 cut(s)	401, 751, 845, 998
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 490
HpyF3I	CTNAG	5 cut(s)	504, 519, 624, 852, 927
HpySE526I	ACGT	1 cut(s)	126
Hsp92I	GRCGYC	1 cut(s)	259
Hsp92II	CATG	8 cut(s)	41, 115, 232, 346, 388, 649, 694, 820
HspAI	GCGC	1 cut(s)	259
KasI	GGCGCC	1 cut(s)	258
Kpn2I	TCCGGA	1 cut(s)	433
Kzo9I	GATC	3 cut(s)	48, 614, 803
LmnI	GCTCC	2 cut(s)	112, 433
Lsp1109I	GCAGC	3 cut(s)	719, 763, 855
LweI	GCATC	4 cut(s)	448, 832, 1014, 1073
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	3 cut(s)	274, 499, 720
MalI	GATC	3 cut(s)	50, 616, 805
MboI	GATC	3 cut(s)	48, 614, 803
MboII	GAAGA	9 cut(s)	26, 43, 48, 158, 254, 426, 570, 610, 911
MflI	RGATCY	2 cut(s)	48, 614
MhlI	GDGCHC	1 cut(s)	359
MluCI	AATT	5 cut(s)	175, 574, 682, 903, 978
Mly113I	GGCGCC	1 cut(s)	259
MmeI	TCCRAC	2 cut(s)	513, 592
MroI	TCCGGA	1 cut(s)	433
MseI	TTAA	1 cut(s)	825
MslI	CAYNNNNRTG	1 cut(s)	233
MspI	CCGG	3 cut(s)	251, 434, 919
MspR9I	CCNGG	3 cut(s)	256, 263, 476
Mva1269I	GAATGC	1 cut(s)	486
MvaI	CCWGG	3 cut(s)	256, 263, 476
MvnI	CGCG	1 cut(s)	988
MwoI	GCNNNNNNNGC	2 cut(s)	113, 490
NarI	GGCGCC	1 cut(s)	259
NcoI	CCATGG	1 cut(s)	111
NdeI	CATATG	1 cut(s)	631
NdeII	GATC	3 cut(s)	48, 614, 803
NlaIII	CATG	8 cut(s)	41, 115, 232, 346, 388, 649, 694, 820
NlaIV	GGNNCC	3 cut(s)	43, 260, 357
NmuCI	GTSAC	1 cut(s)	720
NspI	RCATGY	3 cut(s)	232, 388, 820
PciI	ACATGT	2 cut(s)	228, 816
PctI	GAATGC	1 cut(s)	486
PfeI	GAWTC	2 cut(s)	983, 992
PkrI	GCNGC	5 cut(s)	192, 709, 753, 870, 924
PluTI	GGCGCC	1 cut(s)	262
PscI	ACATGT	2 cut(s)	228, 816
PsiI	TTATAA	1 cut(s)	180
Psp1406I	AACGTT	1 cut(s)	126
Psp6I	CCWGG	3 cut(s)	254, 261, 474
PspGI	CCWGG	3 cut(s)	254, 261, 474
PspN4I	GGNNCC	3 cut(s)	43, 260, 357
PspOMI	GGGCCC	1 cut(s)	355
PspPI	GGNCC	3 cut(s)	355, 356, 1055
PstNI	CAGNNNCTG	1 cut(s)	503
PsuI	RGATCY	2 cut(s)	48, 614
RsaI	GTAC	2 cut(s)	389, 569
RsaNI	GTAC	2 cut(s)	388, 568
RseI	CAYNNNNRTG	1 cut(s)	233
SaqAI	TTAA	1 cut(s)	825
SatI	GCNGC	5 cut(s)	191, 708, 752, 869, 923
Sau3AI	GATC	3 cut(s)	48, 614, 803
Sau96I	GGNCC	3 cut(s)	355, 356, 1055
ScrFI	CCNGG	3 cut(s)	256, 263, 476
SduI	GDGCHC	1 cut(s)	359
SfaNI	GCATC	4 cut(s)	448, 832, 1014, 1073
SfoI	GGCGCC	1 cut(s)	260
SmiMI	CAYNNNNRTG	1 cut(s)	233
Sse9I	AATT	5 cut(s)	175, 574, 682, 903, 978
SsiI	CCGC	3 cut(s)	191, 297, 922
SspDI	GGCGCC	1 cut(s)	258
StyD4I	CCNGG	3 cut(s)	254, 261, 474
StyI	CCWWGG	3 cut(s)	111, 831, 894
TaaI	ACNGT	2 cut(s)	392, 679
TaiI	ACGT	1 cut(s)	129
TasI	AATT	5 cut(s)	175, 574, 682, 903, 978
TatI	WGTACW	1 cut(s)	567
TauI	GCSGC	2 cut(s)	193, 925
TfiI	GAWTC	2 cut(s)	983, 992
Tru1I	TTAA	1 cut(s)	825
Tru9I	TTAA	1 cut(s)	825
TscAI	CASTG	2 cut(s)	717, 856
TseFI	GTSAC	1 cut(s)	720
TseI	GCWGC	3 cut(s)	707, 751, 868
Tsp45I	GTSAC	1 cut(s)	720
TspDTI	ATGAA	4 cut(s)	26, 282, 363, 665
TspGWI	ACGGA	3 cut(s)	91, 426, 1024
TspRI	CASTG	2 cut(s)	717, 856
XapI	RAATTY	1 cut(s)	574
XceI	RCATGY	3 cut(s)	232, 388, 820
XmiI	GTMKAC	1 cut(s)	674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.