Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0014451

Physical Location & Seq

Genomic Coordinates Forward (+)

16985430 .. 16989497

Gene Structure 4068 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1104200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGCGACTTCTCTGCTTTCTCCGCTCTCAGCTCCGCCGTCAGCCGCCGTAGACAGCATCCAAGGTCGACAAGCAGGCGCCTTTAATGCTGGGATCCCAAACACCTTCCTTCACGGCACCAAGGTCGTCGCTGCTCCACCTCTCTCTTCCGGAAGGTTGAAATCTCAGGGACGCTTCAAGCCTGCTTATGCCAAGGCTTCGAACCACGTTCCCAAGCAGTTTAGGCAGGAAAATCTTAAAGATGGATTGATGGATAATTTTAAGAATGTGCCCCATTATCTATATGGCCTTTCTCCTGCCCAAATGGACATGTTCATGACAGAAGATAATCCTGCCAGACGTCAGTCAGAAAAAGTTACAGAGCAAAGCATCTCATCTGCCAACAACTACTTGAATCATGGAGGGATGTATAGCATGTCAGGCATGGATGGCAAGGGCCCTTCACAATACAGTATGAGTGTGAGCATGTATCGGGGAGGTGCAAGAGGAAATGGAAGACCCCGAACTGCTCCTCCTGATCTGCCTTCCTTACTTTTAGATGCTCGGATATGCTATTTGGGCATGCCAATTGTACCAGCAGTAACTGAGCTTCTTGTCGCTCAGTTTATGTGGTTGGATTATGATAACCCTTCGAAGCCTATATACTTGTACATAAATTCATCGGGGACACAGAATGAGAAGATGGAGAGTGTTGGATCTGAAACCGAAGCATATGCGATCGCTGACATGATGAGTTATGTCAAATCGGATGTGTATACTGTGAATTGTGGCATGGCATATGGTCAAGCCGCACTGCTTCTGTCACTTGGAGCAAAGGGTTTTCGTGCCGTACAGCCAAATTCCTCCACAAAATTATATTTACCAAAGGTCAGCAGGTCAAGTGGGTTAGTCATCGACATGTGGATTAAGGCCAAGGAATTGGATGCAAACACAGAGTATTACATTGAGTTGCTTGCAAAAGGAACAGGGAAGTCCAAGGAAGAACTATCTAAAGACGTCCGGCGGCCCAAGTATTTTCAAGCACAAGAAGCCATAGAGTACGGAATTGTAGACAAGATAATAGATTCACGTGATGCAGCATTTGAGAAACGGAATTACGACGAGATGCTTTCTCAATCGAGAGCTATGAGGAGAGGAGCAGTGGGTGGTCCACAAGCAGCTCCATCTGGACTTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009368 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009840 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022613 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

393

Amino Acids

42.87

Weight (kDa)

9.17

Isoelectric Point (pI)

50.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLP_protease	PF00574	175 - 356	7.3e-38	Clp protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49970
fragaria_vesca	FvH4_2g04150
malus_domestica	MD05G1098400.v1.1 MD10G1104200.v1.1
prunus_persica	Prupe.8G143200_v2.0.a1
pyrus_communis	pycom05g09630 pycom10g08980
rosa_chinensis	RchiOBHm_Chr6g0253511
rosa_laevigata	RLG00000015013
rosa_multiflora	Rmu_ssc0000079.1_g000005
rosa_roxburghii	Rroxscaffold_7G00211820
rosa_rugosa	Rorug05G0544700 Rorug05G0544700
rosa_samantha	Rh6AG059800 Rh6BG053800 Rh6DG051100
rosa_wichuraiana	Rw6G005320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	343, 999
Acc36I	ACCTGC	1 cut(s)	864
AccB1I	GGYRCC	2 cut(s)	77, 116
AccBSI	CCGCTC	1 cut(s)	25
AccI	GTMKAC	4 cut(s)	51, 67, 755, 1050
AccIII	TCCGGA	1 cut(s)	149
AciI	CCGC	5 cut(s)	23, 35, 45, 789, 1003
AclWI	GGATC	3 cut(s)	88, 101, 703
AcsI	RAATTY	2 cut(s)	655, 838
AcvI	CACGTG	1 cut(s)	1070
AcyI	GRCGYC	3 cut(s)	78, 340, 996
AfaI	GTAC	4 cut(s)	573, 650, 831, 1040
AflIII	ACRYGT	2 cut(s)	309, 897
AgsI	TTSAA	4 cut(s)	160, 178, 394, 1019
AloI	GAACNNNNNNTCC	2 cut(s)	496, 528
AluBI	AGCT	4 cut(s)	32, 589, 1124, 1160
AluI	AGCT	4 cut(s)	32, 589, 1124, 1160
AlwI	GGATC	3 cut(s)	88, 101, 703
AlwNI	CAGNNNCTG	1 cut(s)	584
Aor13HI	TCCGGA	1 cut(s)	149
AoxI	GGCC	4 cut(s)	286, 436, 909, 1004
ApaI	GGGCCC	1 cut(s)	440
ApeKI	GCWGC	3 cut(s)	131, 1076, 1157
ApoI	RAATTY	2 cut(s)	655, 838
AsiSI	GCGATCGC	1 cut(s)	720
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	4 cut(s)	436, 437, 1005, 1148
AsuII	TTCGAA	2 cut(s)	200, 632
AvaII	GGWCC	1 cut(s)	1148
BaeGI	GKGCMC	2 cut(s)	273, 440
BamHI	GGATCC	1 cut(s)	93
BanI	GGYRCC	2 cut(s)	77, 116
BanII	GRGCYC	1 cut(s)	440
BarI	GAAGNNNNNNTAC	4 cut(s)	573, 605, 626, 658
BbrPI	CACGTG	1 cut(s)	1070
BbsI	GAAGAC	1 cut(s)	502
BbvI	GCAGC	3 cut(s)	118, 1088, 1169
BccI	CCATC	5 cut(s)	236, 244, 422, 676, 1171
BceAI	ACGGC	4 cut(s)	22, 32, 130, 812
BcgI	CGANNNNNNTGC	5 cut(s)	29, 106, 140, 695, 729
BfoI	RGCGCY	1 cut(s)	81
BfuAI	ACCTGC	1 cut(s)	864
BisI	GCNGC	6 cut(s)	45, 132, 789, 1004, 1077, 1158
BlsI	GCNGC	6 cut(s)	46, 133, 790, 1005, 1078, 1159
Bme18I	GGWCC	1 cut(s)	1148
BmgT120I	GGNCC	4 cut(s)	436, 437, 1005, 1148
BmiI	GGNNCC	4 cut(s)	79, 95, 118, 438
BmsI	GCATC	6 cut(s)	66, 378, 529, 913, 1063, 1095
BoxI	GACNNNNGTC	1 cut(s)	343
BpiI	GAAGAC	1 cut(s)	502
Bpu14I	TTCGAA	2 cut(s)	200, 632
BsaAI	YACGTR	1 cut(s)	1070
BsaHI	GRCGYC	3 cut(s)	78, 340, 996
BsaJI	CCNNGG	5 cut(s)	61, 120, 192, 912, 975
BsaWI	WCCGGW	1 cut(s)	149
BsaXI	ACNNNNNCTCC	2 cut(s)	496, 526
BseAI	TCCGGA	1 cut(s)	149
BseDI	CCNNGG	5 cut(s)	61, 120, 192, 912, 975
BseGI	GGATG	5 cut(s)	57, 411, 433, 754, 928
BseMII	CTCAG	4 cut(s)	42, 179, 576, 614
BseRI	GAGGAG	3 cut(s)	501, 1144, 1149
BseSI	GKGCMC	2 cut(s)	273, 440
BseXI	GCAGC	3 cut(s)	118, 1088, 1169
BseYI	CCCAGC	1 cut(s)	89
Bsh1285I	CGRYCG	1 cut(s)	720
BshFI	GGCC	4 cut(s)	288, 438, 911, 1006
BshNI	GGYRCC	2 cut(s)	77, 116
BsiEI	CGRYCG	1 cut(s)	720
BsiSI	CCGG	2 cut(s)	150, 1000
BslFI	GGGAC	2 cut(s)	183, 679
BsmFI	GGGAC	2 cut(s)	183, 679
BsnI	GGCC	4 cut(s)	288, 438, 911, 1006
Bsp119I	TTCGAA	2 cut(s)	200, 632
Bsp120I	GGGCCC	1 cut(s)	436
Bsp1286I	GDGCHC	2 cut(s)	273, 440
Bsp13I	TCCGGA	1 cut(s)	149
Bsp1407I	TGTACA	1 cut(s)	648
Bsp143I	GATC	4 cut(s)	93, 517, 695, 717
BspACI	CCGC	5 cut(s)	23, 35, 45, 789, 1003
BspANI	GGCC	4 cut(s)	288, 438, 911, 1006
BspCNI	CTCAG	4 cut(s)	41, 178, 577, 613
BspEI	TCCGGA	1 cut(s)	149
BspHI	TCATGA	1 cut(s)	315
BspLI	GGNNCC	4 cut(s)	79, 95, 118, 438
BspMI	ACCTGC	1 cut(s)	864
BspPI	GGATC	3 cut(s)	88, 101, 703
BspT104I	TTCGAA	2 cut(s)	200, 632
BspT107I	GGYRCC	2 cut(s)	77, 116
BsrBI	CCGCTC	1 cut(s)	25
BsrGI	TGTACA	1 cut(s)	648
BssECI	CCNNGG	5 cut(s)	61, 120, 192, 912, 975
BssMI	GATC	4 cut(s)	93, 517, 695, 717
BssNAI	GTATAC	1 cut(s)	756
BssNI	GRCGYC	3 cut(s)	78, 340, 996
BssT1I	CCWWGG	5 cut(s)	61, 120, 192, 912, 975
Bst1107I	GTATAC	1 cut(s)	756
Bst4CI	ACNGT	2 cut(s)	452, 760
Bst6I	CTCTTC	1 cut(s)	151
BstACI	GRCGYC	3 cut(s)	78, 340, 996
BstAUI	TGTACA	1 cut(s)	648
BstBAI	YACGTR	1 cut(s)	1070
BstBI	TTCGAA	2 cut(s)	200, 632
BstC8I	GCNNGC	4 cut(s)	76, 183, 563, 954
BstDEI	CTNAG	5 cut(s)	28, 165, 585, 600, 1172
BstF5I	GGATG	5 cut(s)	57, 411, 433, 754, 928
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	4 cut(s)	96, 520, 698, 720
BstMBI	GATC	4 cut(s)	93, 517, 695, 717
BstMCI	CGRYCG	1 cut(s)	720
BstMWI	GCNNNNNNNGC	7 cut(s)	22, 86, 223, 420, 429, 558, 1028
BstNSI	RCATGY	5 cut(s)	313, 418, 469, 565, 901
BstPAI	GACNNNNGTC	1 cut(s)	343
BstSLI	GKGCMC	2 cut(s)	273, 440
BstV1I	GCAGC	3 cut(s)	118, 1088, 1169
BstV2I	GAAGAC	1 cut(s)	502
BstX2I	RGATCY	2 cut(s)	93, 695
BstXI	CCANNNNNNTGG	1 cut(s)	919
BstYI	RGATCY	2 cut(s)	93, 695
BstZ17I	GTATAC	1 cut(s)	756
BsuRI	GGCC	4 cut(s)	288, 438, 911, 1006
BtsCI	GGATG	5 cut(s)	57, 411, 433, 754, 928
BtsI	GCAGTG	2 cut(s)	791, 1146
BtsIMutI	CAGTG	2 cut(s)	791, 1146
BveI	ACCTGC	1 cut(s)	864
Cac8I	GCNNGC	4 cut(s)	76, 183, 563, 954
CaiI	CAGNNNCTG	1 cut(s)	584
CciI	TCATGA	1 cut(s)	315
CfoI	GCGC	1 cut(s)	80
Cfr13I	GGNCC	4 cut(s)	436, 437, 1005, 1148
CseI	GACGC	1 cut(s)	180
Csp6I	GTAC	4 cut(s)	572, 649, 830, 1039
CviQI	GTAC	4 cut(s)	572, 649, 830, 1039
DdeI	CTNAG	5 cut(s)	28, 165, 585, 600, 1172
DinI	GGCGCC	1 cut(s)	79
DpnI	GATC	4 cut(s)	95, 519, 697, 719
DpnII	GATC	4 cut(s)	93, 517, 695, 717
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
EciI	GGCGGA	1 cut(s)	24
Eco130I	CCWWGG	5 cut(s)	61, 120, 192, 912, 975
Eco24I	GRGCYC	1 cut(s)	440
Eco47I	GGWCC	1 cut(s)	1148
Eco72I	CACGTG	1 cut(s)	1070
EcoO109I	RGGNCCY	2 cut(s)	436, 437
EcoT14I	CCWWGG	5 cut(s)	61, 120, 192, 912, 975
EcoT38I	GRGCYC	1 cut(s)	440
EgeI	GGCGCC	1 cut(s)	79
EheI	GGCGCC	1 cut(s)	79
ErhI	CCWWGG	5 cut(s)	61, 120, 192, 912, 975
FaqI	GGGAC	2 cut(s)	183, 679
FauNDI	CATATG	2 cut(s)	712, 778
FblI	GTMKAC	4 cut(s)	51, 67, 755, 1050
Fnu4HI	GCNGC	6 cut(s)	45, 132, 789, 1004, 1077, 1158
FokI	GGATG	5 cut(s)	44, 418, 440, 761, 935
FriOI	GRGCYC	1 cut(s)	440
Fsp4HI	GCNGC	6 cut(s)	45, 132, 789, 1004, 1077, 1158
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	6 cut(s)	45, 132, 789, 1004, 1077, 1158
GsaI	CCCAGC	1 cut(s)	93
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	4 cut(s)	288, 438, 911, 1006
HapII	CCGG	2 cut(s)	150, 1000
HgaI	GACGC	1 cut(s)	180
HhaI	GCGC	1 cut(s)	80
Hin1I	GRCGYC	3 cut(s)	78, 340, 996
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HincII	GTYRAC	1 cut(s)	68
HindII	GTYRAC	1 cut(s)	68
HinfI	GANTC	2 cut(s)	394, 1064
HpaII	CCGG	2 cut(s)	150, 1000
Hpy166II	GTNNAC	5 cut(s)	52, 68, 756, 1051, 1151
Hpy188I	TCNGA	4 cut(s)	349, 546, 700, 748
Hpy188III	TCNNGA	5 cut(s)	150, 316, 515, 1119, 1167
Hpy8I	GTNNAC	5 cut(s)	52, 68, 756, 1051, 1151
Hpy99I	CGWCG	2 cut(s)	131, 1103
HpyAV	CCTTC	6 cut(s)	115, 119, 147, 450, 534, 639
HpyCH4III	ACNGT	2 cut(s)	452, 760
HpyCH4IV	ACGT	4 cut(s)	207, 340, 996, 1069
HpyCH4V	TGCA	4 cut(s)	482, 926, 956, 1076
HpyF10VI	GCNNNNNNNGC	7 cut(s)	22, 86, 223, 420, 429, 558, 1028
HpyF3I	CTNAG	5 cut(s)	28, 165, 585, 600, 1172
HpySE526I	ACGT	4 cut(s)	207, 340, 996, 1069
Hsp92I	GRCGYC	3 cut(s)	78, 340, 996
HspAI	GCGC	1 cut(s)	78
KasI	GGCGCC	1 cut(s)	77
Kpn2I	TCCGGA	1 cut(s)	149
Kzo9I	GATC	4 cut(s)	93, 517, 695, 717
LmnI	GCTCC	6 cut(s)	37, 139, 514, 809, 1136, 1165
Lsp1109I	GCAGC	3 cut(s)	118, 1088, 1169
LweI	GCATC	6 cut(s)	66, 378, 529, 913, 1063, 1095
MaeII	ACGT	4 cut(s)	207, 340, 996, 1069
MaeIII	GTNAC	3 cut(s)	355, 580, 801
MalI	GATC	4 cut(s)	95, 519, 697, 719
MbiI	CCGCTC	1 cut(s)	25
MboI	GATC	4 cut(s)	93, 517, 695, 717
MboII	GAAGA	5 cut(s)	138, 335, 507, 691, 992
MfeI	CAATTG	1 cut(s)	567
MflI	RGATCY	2 cut(s)	93, 695
MhlI	GDGCHC	2 cut(s)	273, 440
MluCI	AATT	9 cut(s)	256, 567, 655, 763, 838, 851, 917, 1044, 1093
Mly113I	GGCGCC	1 cut(s)	78
MmeI	TCCRAC	2 cut(s)	594, 673
MnlI	CCTC	8 cut(s)	150, 395, 470, 479, 522, 853, 1122, 1127
MroI	TCCGGA	1 cut(s)	149
MseI	TTAA	4 cut(s)	84, 237, 261, 906
MslI	CAYNNNNRTG	2 cut(s)	314, 896
MspI	CCGG	2 cut(s)	150, 1000
MunI	CAATTG	1 cut(s)	567
MwoI	GCNNNNNNNGC	7 cut(s)	22, 86, 223, 420, 429, 558, 1028
NarI	GGCGCC	1 cut(s)	78
NdeI	CATATG	2 cut(s)	712, 778
NdeII	GATC	4 cut(s)	93, 517, 695, 717
NlaIV	GGNNCC	4 cut(s)	79, 95, 118, 438
NmuCI	GTSAC	1 cut(s)	801
NspI	RCATGY	5 cut(s)	313, 418, 469, 565, 901
NspV	TTCGAA	2 cut(s)	200, 632
PaeI	GCATGC	1 cut(s)	565
PagI	TCATGA	1 cut(s)	315
PciI	ACATGT	2 cut(s)	309, 897
PfeI	GAWTC	2 cut(s)	394, 1064
PkrI	GCNGC	6 cut(s)	46, 133, 790, 1005, 1078, 1159
Ple19I	CGATCG	1 cut(s)	720
PluTI	GGCGCC	1 cut(s)	81
PmaCI	CACGTG	1 cut(s)	1070
PmlI	CACGTG	1 cut(s)	1070
Ppu21I	YACGTR	1 cut(s)	1070
PscI	ACATGT	2 cut(s)	309, 897
PshAI	GACNNNNGTC	1 cut(s)	343
PspCI	CACGTG	1 cut(s)	1070
PspFI	CCCAGC	1 cut(s)	89
PspN4I	GGNNCC	4 cut(s)	79, 95, 118, 438
PspOMI	GGGCCC	1 cut(s)	436
PspPI	GGNCC	4 cut(s)	436, 437, 1005, 1148
PstNI	CAGNNNCTG	1 cut(s)	584
PsuI	RGATCY	2 cut(s)	93, 695
PvuI	CGATCG	1 cut(s)	720
RgaI	GCGATCGC	1 cut(s)	720
RsaI	GTAC	4 cut(s)	573, 650, 831, 1040
RsaNI	GTAC	4 cut(s)	572, 649, 830, 1039
RseI	CAYNNNNRTG	2 cut(s)	314, 896
SalI	GTCGAC	1 cut(s)	66
SaqAI	TTAA	4 cut(s)	84, 237, 261, 906
SatI	GCNGC	6 cut(s)	45, 132, 789, 1004, 1077, 1158
Sau3AI	GATC	4 cut(s)	93, 517, 695, 717
Sau96I	GGNCC	4 cut(s)	436, 437, 1005, 1148
SduI	GDGCHC	2 cut(s)	273, 440
SfaAI	GCGATCGC	1 cut(s)	720
SfaNI	GCATC	6 cut(s)	66, 378, 529, 913, 1063, 1095
SfoI	GGCGCC	1 cut(s)	79
SfuI	TTCGAA	2 cut(s)	200, 632
SgfI	GCGATCGC	1 cut(s)	720
SinI	GGWCC	1 cut(s)	1148
SmiMI	CAYNNNNRTG	2 cut(s)	314, 896
SphI	GCATGC	1 cut(s)	565
Sse9I	AATT	9 cut(s)	256, 567, 655, 763, 838, 851, 917, 1044, 1093
SsiI	CCGC	5 cut(s)	23, 35, 45, 789, 1003
SspDI	GGCGCC	1 cut(s)	77
StyI	CCWWGG	5 cut(s)	61, 120, 192, 912, 975
TaaI	ACNGT	2 cut(s)	452, 760
TaiI	ACGT	4 cut(s)	210, 343, 999, 1072
TaqI	TCGA	5 cut(s)	67, 200, 632, 894, 1118
TasI	AATT	9 cut(s)	256, 567, 655, 763, 838, 851, 917, 1044, 1093
TatI	WGTACW	1 cut(s)	648
TauI	GCSGC	3 cut(s)	47, 791, 1006
TfiI	GAWTC	2 cut(s)	394, 1064
Tru1I	TTAA	4 cut(s)	84, 237, 261, 906
Tru9I	TTAA	4 cut(s)	84, 237, 261, 906
TscAI	CASTG	2 cut(s)	798, 1146
TseFI	GTSAC	1 cut(s)	801
TseI	GCWGC	3 cut(s)	131, 1076, 1157
Tsp45I	GTSAC	1 cut(s)	801
TspDTI	ATGAA	2 cut(s)	304, 648
TspGWI	ACGGA	2 cut(s)	1056, 1105
TspRI	CASTG	2 cut(s)	798, 1146
VpaK11BI	GGWCC	1 cut(s)	1148
XapI	RAATTY	2 cut(s)	655, 838
XceI	RCATGY	5 cut(s)	313, 418, 469, 565, 901
XcmI	CCANNNNNNNNNTGG	1 cut(s)	281
XmiI	GTMKAC	4 cut(s)	51, 67, 755, 1050
ZraI	GACGTC	2 cut(s)	341, 997

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.