ATP-dependent Clp protease proteolytic
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G49970 |
| fragaria_vesca | FvH4_2g04150 |
| malus_domestica | MD05G1098400.v1.1 MD10G1104200.v1.1 |
| prunus_persica | Prupe.8G143200_v2.0.a1 |
| pyrus_communis | pycom05g09630 pycom10g08980 |
| rosa_chinensis | RchiOBHm_Chr6g0253511 |
| rosa_laevigata | RLG00000015013 |
| rosa_multiflora | Rmu_ssc0000079.1_g000005 |
| rosa_roxburghii | Rroxscaffold_7G00211820 |
| rosa_rugosa | Rorug05G0544700 Rorug05G0544700 |
| rosa_samantha | Rh6AG059800 Rh6BG053800 Rh6DG051100 |
| rosa_wichuraiana | Rw6G005320 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 505 |
| Acc36I | ACCTGC | 1 cut(s) | 1026 |
| AccB1I | GGYRCC | 2 cut(s) | 239, 278 |
| AccBSI | CCGCTC | 1 cut(s) | 187 |
| AccI | GTMKAC | 1 cut(s) | 917 |
| AciI | CCGC | 6 cut(s) | 185, 197, 207, 951, 1165, 1308 |
| AclWI | GGATC | 6 cut(s) | 4, 17, 36, 250, 263, 865 |
| AcoI | YGGCCR | 1 cut(s) | 80 |
| AcsI | RAATTY | 2 cut(s) | 817, 1000 |
| AcuI | CTGAAG | 1 cut(s) | 118 |
| AcvI | CACGTG | 1 cut(s) | 1232 |
| AcyI | GRCGYC | 2 cut(s) | 240, 502 |
| AfaI | GTAC | 3 cut(s) | 735, 812, 993 |
| AflII | CTTAAG | 1 cut(s) | 313 |
| AflIII | ACRYGT | 2 cut(s) | 471, 1059 |
| AgsI | TTSAA | 5 cut(s) | 22, 322, 340, 556, 1181 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 658, 690 |
| AluBI | AGCT | 9 cut(s) | 121, 138, 194, 326, 359, 751, 884, 1286, 1322 |
| AluI | AGCT | 9 cut(s) | 121, 138, 194, 326, 359, 751, 884, 1286, 1322 |
| Alw21I | GWGCWC | 1 cut(s) | 123 |
| Alw26I | GTCTC | 1 cut(s) | 325 |
| AlwI | GGATC | 6 cut(s) | 4, 17, 36, 250, 263, 865 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 746 |
| AoxI | GGCC | 5 cut(s) | 80, 448, 598, 1071, 1166 |
| ApaI | GGGCCC | 1 cut(s) | 602 |
| ApeKI | GCWGC | 4 cut(s) | 219, 293, 1238, 1319 |
| ApoI | RAATTY | 2 cut(s) | 817, 1000 |
| AspLEI | GCGC | 1 cut(s) | 242 |
| AspS9I | GGNCC | 4 cut(s) | 364, 598, 599, 1310 |
| AvaII | GGWCC | 2 cut(s) | 364, 1310 |
| BaeGI | GKGCMC | 1 cut(s) | 602 |
| BalI | TGGCCA | 1 cut(s) | 82 |
| BamHI | GGATCC | 2 cut(s) | 9, 255 |
| BanI | GGYRCC | 2 cut(s) | 239, 278 |
| BanII | GRGCYC | 2 cut(s) | 123, 602 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 735, 767 |
| BauI | CACGAG | 1 cut(s) | 1281 |
| BbrPI | CACGTG | 1 cut(s) | 1232 |
| BbsI | GAAGAC | 2 cut(s) | 124, 664 |
| Bbv12I | GWGCWC | 1 cut(s) | 123 |
| BbvI | GCAGC | 4 cut(s) | 231, 280, 1250, 1331 |
| BccI | CCATC | 6 cut(s) | 21, 398, 406, 584, 838, 1333 |
| BceAI | ACGGC | 3 cut(s) | 184, 292, 974 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 157, 191, 268, 302, 857, 891 |
| BcoDI | GTCTC | 1 cut(s) | 325 |
| BfoI | RGCGCY | 1 cut(s) | 243 |
| BfrI | CTTAAG | 1 cut(s) | 313 |
| BfuAI | ACCTGC | 1 cut(s) | 1026 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 237 |
| BisI | GCNGC | 7 cut(s) | 207, 220, 294, 951, 1166, 1239, 1320 |
| BlsI | GCNGC | 7 cut(s) | 208, 221, 295, 952, 1167, 1240, 1321 |
| Bme18I | GGWCC | 2 cut(s) | 364, 1310 |
| BmgT120I | GGNCC | 4 cut(s) | 364, 598, 599, 1310 |
| BmiI | GGNNCC | 5 cut(s) | 11, 241, 257, 280, 600 |
| BmsI | GCATC | 5 cut(s) | 540, 691, 1075, 1225, 1257 |
| BoxI | GACNNNNGTC | 1 cut(s) | 505 |
| BpiI | GAAGAC | 2 cut(s) | 124, 664 |
| Bsa29I | ATCGAT | 1 cut(s) | 1224 |
| BsaAI | YACGTR | 1 cut(s) | 1232 |
| BsaHI | GRCGYC | 2 cut(s) | 240, 502 |
| BsaJI | CCNNGG | 5 cut(s) | 162, 223, 282, 1074, 1137 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 658, 688 |
| Bse1I | ACTGG | 1 cut(s) | 1086 |
| BseCI | ATCGAT | 1 cut(s) | 1224 |
| BseDI | CCNNGG | 5 cut(s) | 162, 223, 282, 1074, 1137 |
| BseGI | GGATG | 3 cut(s) | 573, 595, 1090 |
| BseMII | CTCAG | 4 cut(s) | 204, 341, 738, 776 |
| BseNI | ACTGG | 1 cut(s) | 1086 |
| BseRI | GAGGAG | 3 cut(s) | 663, 1306, 1311 |
| BseSI | GKGCMC | 1 cut(s) | 602 |
| BseXI | GCAGC | 4 cut(s) | 231, 280, 1250, 1331 |
| BseYI | CCCAGC | 1 cut(s) | 251 |
| BsgI | GTGCAG | 1 cut(s) | 279 |
| BshFI | GGCC | 5 cut(s) | 82, 450, 600, 1073, 1168 |
| BshNI | GGYRCC | 2 cut(s) | 239, 278 |
| BshVI | ATCGAT | 1 cut(s) | 1224 |
| BsiHKAI | GWGCWC | 1 cut(s) | 123 |
| BsiSI | CCGG | 1 cut(s) | 385 |
| BslFI | GGGAC | 1 cut(s) | 841 |
| BsmAI | GTCTC | 1 cut(s) | 325 |
| BsmBI | CGTCTC | 1 cut(s) | 325 |
| BsmFI | GGGAC | 1 cut(s) | 841 |
| BsmI | GAATGC | 1 cut(s) | 105 |
| BsnI | GGCC | 5 cut(s) | 82, 450, 600, 1073, 1168 |
| Bsp120I | GGGCCC | 1 cut(s) | 598 |
| Bsp1286I | GDGCHC | 2 cut(s) | 123, 602 |
| Bsp1407I | TGTACA | 1 cut(s) | 810 |
| Bsp143I | GATC | 5 cut(s) | 9, 41, 255, 679, 857 |
| Bsp19I | CCATGG | 1 cut(s) | 162 |
| BspACI | CCGC | 6 cut(s) | 185, 197, 207, 951, 1165, 1308 |
| BspANI | GGCC | 5 cut(s) | 82, 450, 600, 1073, 1168 |
| BspCNI | CTCAG | 4 cut(s) | 203, 340, 739, 775 |
| BspDI | ATCGAT | 1 cut(s) | 1224 |
| BspHI | TCATGA | 1 cut(s) | 477 |
| BspLI | GGNNCC | 5 cut(s) | 11, 241, 257, 280, 600 |
| BspMI | ACCTGC | 1 cut(s) | 1026 |
| BspPI | GGATC | 6 cut(s) | 4, 17, 36, 250, 263, 865 |
| BspQI | GCTCTTC | 1 cut(s) | 111 |
| BspT107I | GGYRCC | 2 cut(s) | 239, 278 |
| BspTI | CTTAAG | 1 cut(s) | 313 |
| BsrBI | CCGCTC | 1 cut(s) | 187 |
| BsrGI | TGTACA | 1 cut(s) | 810 |
| BsrI | ACTGG | 1 cut(s) | 1086 |
| BssECI | CCNNGG | 5 cut(s) | 162, 223, 282, 1074, 1137 |
| BssMI | GATC | 5 cut(s) | 9, 41, 255, 679, 857 |
| BssNAI | GTATAC | 1 cut(s) | 918 |
| BssNI | GRCGYC | 2 cut(s) | 240, 502 |
| BssSI | CACGAG | 1 cut(s) | 1281 |
| BssT1I | CCWWGG | 5 cut(s) | 162, 223, 282, 1074, 1137 |
| Bst1107I | GTATAC | 1 cut(s) | 918 |
| Bst2BI | CACGAG | 1 cut(s) | 1281 |
| Bst4CI | ACNGT | 3 cut(s) | 130, 614, 922 |
| Bst6I | CTCTTC | 1 cut(s) | 111 |
| BstACI | GRCGYC | 2 cut(s) | 240, 502 |
| BstAFI | CTTAAG | 1 cut(s) | 313 |
| BstAUI | TGTACA | 1 cut(s) | 810 |
| BstBAI | YACGTR | 1 cut(s) | 1232 |
| BstC8I | GCNNGC | 1 cut(s) | 725 |
| BstDEI | CTNAG | 6 cut(s) | 190, 211, 327, 747, 762, 795 |
| BstDSI | CCRYGG | 1 cut(s) | 162 |
| BstF5I | GGATG | 3 cut(s) | 573, 595, 1090 |
| BstH2I | RGCGCY | 1 cut(s) | 243 |
| BstHHI | GCGC | 1 cut(s) | 242 |
| BstKTI | GATC | 5 cut(s) | 12, 44, 258, 682, 860 |
| BstMAI | GTCTC | 1 cut(s) | 325 |
| BstMBI | GATC | 5 cut(s) | 9, 41, 255, 679, 857 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 88, 184, 228, 237, 248, 385, 591, 720, 1190 |
| BstNSI | RCATGY | 4 cut(s) | 475, 631, 727, 1063 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 505 |
| BstSLI | GKGCMC | 1 cut(s) | 602 |
| BstV1I | GCAGC | 4 cut(s) | 231, 280, 1250, 1331 |
| BstV2I | GAAGAC | 2 cut(s) | 124, 664 |
| BstX2I | RGATCY | 4 cut(s) | 9, 41, 255, 857 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1081 |
| BstYI | RGATCY | 4 cut(s) | 9, 41, 255, 857 |
| BstZ17I | GTATAC | 1 cut(s) | 918 |
| Bsu15I | ATCGAT | 1 cut(s) | 1224 |
| BsuRI | GGCC | 5 cut(s) | 82, 450, 600, 1073, 1168 |
| BsuTUI | ATCGAT | 1 cut(s) | 1224 |
| BtgI | CCRYGG | 1 cut(s) | 162 |
| BtsCI | GGATG | 3 cut(s) | 573, 595, 1090 |
| BtsI | GCAGTG | 2 cut(s) | 953, 1308 |
| BtsIMutI | CAGTG | 3 cut(s) | 126, 953, 1308 |
| BveI | ACCTGC | 1 cut(s) | 1026 |
| Cac8I | GCNNGC | 1 cut(s) | 725 |
| CaiI | CAGNNNCTG | 1 cut(s) | 746 |
| CciI | TCATGA | 1 cut(s) | 477 |
| CfoI | GCGC | 1 cut(s) | 242 |
| Cfr13I | GGNCC | 4 cut(s) | 364, 598, 599, 1310 |
| ClaI | ATCGAT | 1 cut(s) | 1224 |
| CseI | GACGC | 1 cut(s) | 342 |
| Csp6I | GTAC | 3 cut(s) | 734, 811, 992 |
| CviQI | GTAC | 3 cut(s) | 734, 811, 992 |
| DdeI | CTNAG | 6 cut(s) | 190, 211, 327, 747, 762, 795 |
| DinI | GGCGCC | 1 cut(s) | 241 |
| DpnI | GATC | 5 cut(s) | 11, 43, 257, 681, 859 |
| DpnII | GATC | 5 cut(s) | 9, 41, 255, 679, 857 |
| EaeI | YGGCCR | 1 cut(s) | 80 |
| Eam1104I | CTCTTC | 1 cut(s) | 111 |
| EarI | CTCTTC | 1 cut(s) | 111 |
| EciI | GGCGGA | 1 cut(s) | 186 |
| Ecl136II | GAGCTC | 1 cut(s) | 121 |
| Eco130I | CCWWGG | 5 cut(s) | 162, 223, 282, 1074, 1137 |
| Eco24I | GRGCYC | 2 cut(s) | 123, 602 |
| Eco47I | GGWCC | 2 cut(s) | 364, 1310 |
| Eco53kI | GAGCTC | 1 cut(s) | 121 |
| Eco57I | CTGAAG | 1 cut(s) | 118 |
| Eco72I | CACGTG | 1 cut(s) | 1232 |
| EcoICRI | GAGCTC | 1 cut(s) | 121 |
| EcoO109I | RGGNCCY | 2 cut(s) | 598, 599 |
| EcoT14I | CCWWGG | 5 cut(s) | 162, 223, 282, 1074, 1137 |
| EcoT38I | GRGCYC | 2 cut(s) | 123, 602 |
| EgeI | GGCGCC | 1 cut(s) | 241 |
| EheI | GGCGCC | 1 cut(s) | 241 |
| ErhI | CCWWGG | 5 cut(s) | 162, 223, 282, 1074, 1137 |
| Esp3I | CGTCTC | 1 cut(s) | 325 |
| FaqI | GGGAC | 1 cut(s) | 841 |
| FauNDI | CATATG | 2 cut(s) | 874, 940 |
| FblI | GTMKAC | 1 cut(s) | 917 |
| Fnu4HI | GCNGC | 7 cut(s) | 207, 220, 294, 951, 1166, 1239, 1320 |
| FokI | GGATG | 3 cut(s) | 580, 602, 1097 |
| FriOI | GRGCYC | 2 cut(s) | 123, 602 |
| Fsp4HI | GCNGC | 7 cut(s) | 207, 220, 294, 951, 1166, 1239, 1320 |
| GlaI | GCGC | 1 cut(s) | 241 |
| GluI | GCNGC | 7 cut(s) | 207, 220, 294, 951, 1166, 1239, 1320 |
| GsaI | CCCAGC | 1 cut(s) | 255 |
| HaeII | RGCGCY | 1 cut(s) | 243 |
| HaeIII | GGCC | 5 cut(s) | 82, 450, 600, 1073, 1168 |
| HapII | CCGG | 1 cut(s) | 385 |
| HgaI | GACGC | 1 cut(s) | 342 |
| HhaI | GCGC | 1 cut(s) | 242 |
| Hin1I | GRCGYC | 2 cut(s) | 240, 502 |
| Hin6I | GCGC | 1 cut(s) | 240 |
| HinP1I | GCGC | 1 cut(s) | 240 |
| HincII | GTYRAC | 1 cut(s) | 1213 |
| HindII | GTYRAC | 1 cut(s) | 1213 |
| HindIII | AAGCTT | 1 cut(s) | 357 |
| HinfI | GANTC | 4 cut(s) | 556, 1206, 1226, 1332 |
| HpaII | CCGG | 1 cut(s) | 385 |
| Hpy166II | GTNNAC | 3 cut(s) | 918, 1213, 1313 |
| Hpy188I | TCNGA | 7 cut(s) | 46, 330, 364, 511, 708, 862, 910 |
| Hpy188III | TCNNGA | 5 cut(s) | 142, 478, 677, 1281, 1329 |
| Hpy8I | GTNNAC | 3 cut(s) | 918, 1213, 1313 |
| Hpy99I | CGWCG | 1 cut(s) | 293 |
| HpyAV | CCTTC | 5 cut(s) | 277, 281, 612, 696, 801 |
| HpyCH4III | ACNGT | 3 cut(s) | 130, 614, 922 |
| HpyCH4IV | ACGT | 3 cut(s) | 369, 502, 1231 |
| HpyCH4V | TGCA | 5 cut(s) | 296, 644, 1088, 1118, 1238 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 88, 184, 228, 237, 248, 385, 591, 720, 1190 |
| HpyF3I | CTNAG | 6 cut(s) | 190, 211, 327, 747, 762, 795 |
| HpySE526I | ACGT | 3 cut(s) | 369, 502, 1231 |
| Hsp92I | GRCGYC | 2 cut(s) | 240, 502 |
| HspAI | GCGC | 1 cut(s) | 240 |
| KasI | GGCGCC | 1 cut(s) | 239 |
| Kzo9I | GATC | 5 cut(s) | 9, 41, 255, 679, 857 |
| LguI | GCTCTTC | 1 cut(s) | 111 |
| LmnI | GCTCC | 5 cut(s) | 199, 676, 971, 1298, 1327 |
| Lsp1109I | GCAGC | 4 cut(s) | 231, 280, 1250, 1331 |
| LweI | GCATC | 5 cut(s) | 540, 691, 1075, 1225, 1257 |
| MaeII | ACGT | 3 cut(s) | 369, 502, 1231 |
| MaeIII | GTNAC | 2 cut(s) | 742, 963 |
| MalI | GATC | 5 cut(s) | 11, 43, 257, 681, 859 |
| MbiI | CCGCTC | 1 cut(s) | 187 |
| MboI | GATC | 5 cut(s) | 9, 41, 255, 679, 857 |
| MboII | GAAGA | 6 cut(s) | 124, 128, 497, 669, 853, 1154 |
| MflI | RGATCY | 4 cut(s) | 9, 41, 255, 857 |
| MhlI | GDGCHC | 2 cut(s) | 123, 602 |
| MlsI | TGGCCA | 1 cut(s) | 82 |
| MluCI | AATT | 7 cut(s) | 99, 418, 817, 925, 1000, 1013, 1255 |
| MluNI | TGGCCA | 1 cut(s) | 82 |
| Mly113I | GGCGCC | 1 cut(s) | 240 |
| MmeI | TCCRAC | 3 cut(s) | 69, 756, 835 |
| MnlI | CCTC | 9 cut(s) | 76, 312, 557, 632, 641, 684, 1015, 1284, 1289 |
| Mox20I | TGGCCA | 1 cut(s) | 82 |
| MscI | TGGCCA | 1 cut(s) | 82 |
| MseI | TTAA | 4 cut(s) | 246, 314, 423, 1068 |
| MslI | CAYNNNNRTG | 2 cut(s) | 476, 1058 |
| Msp20I | TGGCCA | 1 cut(s) | 82 |
| MspCI | CTTAAG | 1 cut(s) | 313 |
| MspI | CCGG | 1 cut(s) | 385 |
| Mva1269I | GAATGC | 1 cut(s) | 105 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 88, 184, 228, 237, 248, 385, 591, 720, 1190 |
| NarI | GGCGCC | 1 cut(s) | 240 |
| NcoI | CCATGG | 1 cut(s) | 162 |
| NdeI | CATATG | 2 cut(s) | 874, 940 |
| NdeII | GATC | 5 cut(s) | 9, 41, 255, 679, 857 |
| NlaIV | GGNNCC | 5 cut(s) | 11, 241, 257, 280, 600 |
| NmuCI | GTSAC | 1 cut(s) | 963 |
| NspI | RCATGY | 4 cut(s) | 475, 631, 727, 1063 |
| PaeI | GCATGC | 1 cut(s) | 727 |
| PagI | TCATGA | 1 cut(s) | 477 |
| PciI | ACATGT | 2 cut(s) | 471, 1059 |
| PciSI | GCTCTTC | 1 cut(s) | 111 |
| PctI | GAATGC | 1 cut(s) | 105 |
| PfeI | GAWTC | 4 cut(s) | 556, 1206, 1226, 1332 |
| PflFI | GACNNNGTC | 1 cut(s) | 128 |
| PkrI | GCNGC | 7 cut(s) | 208, 221, 295, 952, 1167, 1240, 1321 |
| PluTI | GGCGCC | 1 cut(s) | 243 |
| PmaCI | CACGTG | 1 cut(s) | 1232 |
| PmlI | CACGTG | 1 cut(s) | 1232 |
| Ppu21I | YACGTR | 1 cut(s) | 1232 |
| PscI | ACATGT | 2 cut(s) | 471, 1059 |
| PshAI | GACNNNNGTC | 1 cut(s) | 505 |
| Psp124BI | GAGCTC | 1 cut(s) | 123 |
| PspCI | CACGTG | 1 cut(s) | 1232 |
| PspFI | CCCAGC | 1 cut(s) | 251 |
| PspN4I | GGNNCC | 5 cut(s) | 11, 241, 257, 280, 600 |
| PspOMI | GGGCCC | 1 cut(s) | 598 |
| PspPI | GGNCC | 4 cut(s) | 364, 598, 599, 1310 |
| PstNI | CAGNNNCTG | 1 cut(s) | 746 |
| PsuI | RGATCY | 4 cut(s) | 9, 41, 255, 857 |
| PsyI | GACNNNGTC | 1 cut(s) | 128 |
| RsaI | GTAC | 3 cut(s) | 735, 812, 993 |
| RsaNI | GTAC | 3 cut(s) | 734, 811, 992 |
| RseI | CAYNNNNRTG | 2 cut(s) | 476, 1058 |
| SacI | GAGCTC | 1 cut(s) | 123 |
| SapI | GCTCTTC | 1 cut(s) | 111 |
| SaqAI | TTAA | 4 cut(s) | 246, 314, 423, 1068 |
| SatI | GCNGC | 7 cut(s) | 207, 220, 294, 951, 1166, 1239, 1320 |
| Sau3AI | GATC | 5 cut(s) | 9, 41, 255, 679, 857 |
| Sau96I | GGNCC | 4 cut(s) | 364, 598, 599, 1310 |
| SduI | GDGCHC | 2 cut(s) | 123, 602 |
| SfaNI | GCATC | 5 cut(s) | 540, 691, 1075, 1225, 1257 |
| SfoI | GGCGCC | 1 cut(s) | 241 |
| SinI | GGWCC | 2 cut(s) | 364, 1310 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 476, 1058 |
| SmlI | CTYRAG | 1 cut(s) | 313 |
| SmoI | CTYRAG | 1 cut(s) | 313 |
| SphI | GCATGC | 1 cut(s) | 727 |
| Sse9I | AATT | 7 cut(s) | 99, 418, 817, 925, 1000, 1013, 1255 |
| SsiI | CCGC | 6 cut(s) | 185, 197, 207, 951, 1165, 1308 |
| SspDI | GGCGCC | 1 cut(s) | 239 |
| SspI | AATATT | 1 cut(s) | 1175 |
| SstI | GAGCTC | 1 cut(s) | 123 |
| StyI | CCWWGG | 5 cut(s) | 162, 223, 282, 1074, 1137 |
| TaaI | ACNGT | 3 cut(s) | 130, 614, 922 |
| TaiI | ACGT | 3 cut(s) | 372, 505, 1234 |
| TaqI | TCGA | 3 cut(s) | 123, 141, 1224 |
| TasI | AATT | 7 cut(s) | 99, 418, 817, 925, 1000, 1013, 1255 |
| TatI | WGTACW | 1 cut(s) | 810 |
| TauI | GCSGC | 3 cut(s) | 209, 953, 1168 |
| TfiI | GAWTC | 4 cut(s) | 556, 1206, 1226, 1332 |
| Tru1I | TTAA | 4 cut(s) | 246, 314, 423, 1068 |
| Tru9I | TTAA | 4 cut(s) | 246, 314, 423, 1068 |
| TscAI | CASTG | 3 cut(s) | 133, 960, 1308 |
| TseFI | GTSAC | 1 cut(s) | 963 |
| TseI | GCWGC | 4 cut(s) | 219, 293, 1238, 1319 |
| Tsp45I | GTSAC | 1 cut(s) | 963 |
| TspDTI | ATGAA | 3 cut(s) | 98, 466, 810 |
| TspGWI | ACGGA | 1 cut(s) | 1267 |
| TspRI | CASTG | 3 cut(s) | 133, 960, 1308 |
| Tth111I | GACNNNGTC | 1 cut(s) | 128 |
| Vha464I | CTTAAG | 1 cut(s) | 313 |
| VpaK11BI | GGWCC | 2 cut(s) | 364, 1310 |
| XapI | RAATTY | 2 cut(s) | 817, 1000 |
| XceI | RCATGY | 4 cut(s) | 475, 631, 727, 1063 |
| XmiI | GTMKAC | 1 cut(s) | 917 |
| ZraI | GACGTC | 1 cut(s) | 503 |