Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0014451

Physical Location & Seq

Genomic Coordinates Forward (+)

16017954 .. 16022151

Gene Structure 4198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G143200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGCCACTTCTCTACTTTCTCATCTCTCAGCTCCGCCCTCACCCACCATAGACAATTACCAAGGTCGTCAAGCAGGTGCCTTTAATTCTGGGATCCCAAATACCTTCCTTCATGGCACCAAAGTCTTCTCCGCTACACCTTCTTCTTCAAGAAGGCTCGCAGCTCAAAGACGCTTCAAGTCTGCCTATGCCAAGGCTTCGGAACACATTCCCAAGCAGTTCAGGCAAGAAAATCTCAAAGATGGACTGATGGATAATTACAAGAATGTGCCCCATTATCTGTATGGCCTTTCTCCTTCCCAAATGGACATGTTCATGACAGAAGATAATCCTGCCCGACGTCAGTCAGAAAAAGTTACAGAGCAAAGCATCTCGTCTGCGAACAACTACTTGAATCATGGAGGGATGTGGAGTATGTCAGGCATGGATGACAAGGGCCCTTCAAAATATAGTATGAGTGTGAGCATGTATCGGGGAGGTGCAAGAGGATATGGAAGACCCAGAACTGCTCCTCCTGATTTGCCTTCCTTACTTTTAGATGCTCGGATATGCTATTTGGGCATGCCAATTGTTCCAGCAGTAACTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGATTATGATAACCCTTCTAAGCCCATATATTTGTACATAAATTCATCTGGGACACAGAATGAGAAGATGGAGAGTGTTGGATCTGAAACTGAGGCATATGCCATAGCTGACATGATGAATTATGTCAAATCAGATGTGTACACTGTGAATTGTGGCATGGCATATGGTCAAGCAGCACTGCTTCTGTCACTTGGAACAAGAGGTTATCGTGCCGTACAGCCAAATTCCTCCACAAAATTATATCTGCCAAAGGTCAGCCGGTCAAGTGGCTCAGTCATCGACATGTGGATTAAGGCCAAGGAACTGGATGCAAACACAGAGTATTACATTGAGTTACTCGCAAAAGGAACAGGGAAGACCAAGGAAGAAATTGCTAAAGACATCCAGCGTCCCAAATATTTTCAAGGACAAGAAGCCATAGAATACGGACTGGTAGACAAGATAATTGATTCTCGTGATGCTGCATTTGAGAAAAGGAATTACGATGAGATGCTTACTCAATCAAGAGCTATGAGGAGAGCAGGGGCAGGCGGTCCGCAAGCAGCTCCATCTGGATTTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009368 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009840 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022613 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

393

Amino Acids

43.49

Weight (kDa)

9.07

Isoelectric Point (pI)

51.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49970
fragaria_vesca	FvH4_2g04150
malus_domestica	MD05G1098400.v1.1 MD10G1104200.v1.1
prunus_persica	Prupe.8G143200_v2.0.a1
pyrus_communis	pycom05g09630 pycom10g08980
rosa_chinensis	RchiOBHm_Chr6g0253511
rosa_laevigata	RLG00000015013
rosa_multiflora	Rmu_ssc0000079.1_g000005
rosa_roxburghii	Rroxscaffold_7G00211820
rosa_rugosa	Rorug05G0544700 Rorug05G0544700
rosa_samantha	Rh6AG059800 Rh6BG053800 Rh6DG051100
rosa_wichuraiana	Rw6G005320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	65
AatII	GACGTC	1 cut(s)	343
Acc36I	ACCTGC	1 cut(s)	65
AccB1I	GGYRCC	2 cut(s)	77, 116
AccI	GTMKAC	1 cut(s)	1050
AciI	CCGC	4 cut(s)	35, 132, 1146, 1151
AclWI	GGATC	3 cut(s)	88, 101, 703
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	655, 838
AcyI	GRCGYC	1 cut(s)	340
AfaI	GTAC	3 cut(s)	650, 755, 831
AflIII	ACRYGT	2 cut(s)	309, 897
AgsI	TTSAA	5 cut(s)	150, 178, 394, 444, 1019
AloI	GAACNNNNNNTCC	2 cut(s)	496, 528
AluBI	AGCT	6 cut(s)	32, 164, 589, 722, 1124, 1160
AluI	AGCT	6 cut(s)	32, 164, 589, 722, 1124, 1160
AlwI	GGATC	3 cut(s)	88, 101, 703
AlwNI	CAGNNNCTG	1 cut(s)	584
AoxI	GGCC	4 cut(s)	3, 286, 436, 909
ApaI	GGGCCC	1 cut(s)	440
ApeKI	GCWGC	4 cut(s)	161, 788, 1076, 1157
ApoI	RAATTY	2 cut(s)	655, 838
Asp700I	GAANNNNTTC	1 cut(s)	207
AspS9I	GGNCC	3 cut(s)	436, 437, 1148
AsuHPI	GGTGA	1 cut(s)	33
AvaII	GGWCC	1 cut(s)	1148
BaeGI	GKGCMC	2 cut(s)	273, 440
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	93
BanI	GGYRCC	2 cut(s)	77, 116
BanII	GRGCYC	1 cut(s)	440
BarI	GAAGNNNNNNTAC	2 cut(s)	573, 605
BauI	CACGAG	1 cut(s)	1068
BbsI	GAAGAC	3 cut(s)	118, 502, 977
BbvI	GCAGC	4 cut(s)	173, 800, 1063, 1169
BccI	CCATC	4 cut(s)	236, 244, 676, 1171
BceAI	ACGGC	1 cut(s)	812
BfuAI	ACCTGC	1 cut(s)	65
BisI	GCNGC	4 cut(s)	162, 789, 1077, 1158
BlsI	GCNGC	4 cut(s)	163, 790, 1078, 1159
Bme18I	GGWCC	1 cut(s)	1148
BmgT120I	GGNCC	3 cut(s)	436, 437, 1148
BmiI	GGNNCC	4 cut(s)	79, 95, 118, 438
BmsI	GCATC	5 cut(s)	378, 529, 913, 1063, 1095
BoxI	GACNNNNGTC	1 cut(s)	343
BpiI	GAAGAC	3 cut(s)	118, 502, 977
BsaHI	GRCGYC	1 cut(s)	340
BsaJI	CCNNGG	4 cut(s)	61, 192, 912, 975
BsaXI	ACNNNNNCTCC	2 cut(s)	496, 526
Bse118I	RCCGGY	1 cut(s)	873
Bse1I	ACTGG	2 cut(s)	924, 1050
BseDI	CCNNGG	4 cut(s)	61, 192, 912, 975
BseGI	GGATG	4 cut(s)	411, 433, 928, 996
BseMII	CTCAG	5 cut(s)	42, 576, 614, 696, 900
BseNI	ACTGG	2 cut(s)	924, 1050
BseRI	GAGGAG	2 cut(s)	501, 1144
BseSI	GKGCMC	2 cut(s)	273, 440
BseXI	GCAGC	4 cut(s)	173, 800, 1063, 1169
BshFI	GGCC	4 cut(s)	5, 288, 438, 911
BshNI	GGYRCC	2 cut(s)	77, 116
BsiSI	CCGG	1 cut(s)	874
BslFI	GGGAC	2 cut(s)	679, 990
BsmFI	GGGAC	2 cut(s)	679, 990
BsnI	GGCC	4 cut(s)	5, 288, 438, 911
Bsp120I	GGGCCC	1 cut(s)	436
Bsp1286I	GDGCHC	2 cut(s)	273, 440
Bsp1407I	TGTACA	2 cut(s)	648, 753
Bsp143I	GATC	2 cut(s)	93, 695
BspACI	CCGC	4 cut(s)	35, 132, 1146, 1151
BspANI	GGCC	4 cut(s)	5, 288, 438, 911
BspCNI	CTCAG	5 cut(s)	41, 577, 613, 697, 899
BspHI	TCATGA	1 cut(s)	315
BspLI	GGNNCC	4 cut(s)	79, 95, 118, 438
BspMI	ACCTGC	1 cut(s)	65
BspPI	GGATC	3 cut(s)	88, 101, 703
BspT107I	GGYRCC	2 cut(s)	77, 116
BsrFI	RCCGGY	1 cut(s)	873
BsrGI	TGTACA	2 cut(s)	648, 753
BsrI	ACTGG	2 cut(s)	924, 1050
BssAI	RCCGGY	1 cut(s)	873
BssECI	CCNNGG	4 cut(s)	61, 192, 912, 975
BssMI	GATC	2 cut(s)	93, 695
BssNI	GRCGYC	1 cut(s)	340
BssSI	CACGAG	1 cut(s)	1068
BssT1I	CCWWGG	4 cut(s)	61, 192, 912, 975
Bst2BI	CACGAG	1 cut(s)	1068
Bst4CI	ACNGT	1 cut(s)	760
BstACI	GRCGYC	1 cut(s)	340
BstAUI	TGTACA	2 cut(s)	648, 753
BstC8I	GCNNGC	4 cut(s)	159, 563, 1144, 1155
BstDEI	CTNAG	6 cut(s)	28, 585, 600, 633, 705, 886
BstF5I	GGATG	4 cut(s)	411, 433, 928, 996
BstKTI	GATC	2 cut(s)	96, 698
BstMBI	GATC	2 cut(s)	93, 695
BstMWI	GCNNNNNNNGC	2 cut(s)	223, 558
BstNSI	RCATGY	4 cut(s)	313, 469, 565, 901
BstPAI	GACNNNNGTC	1 cut(s)	343
BstSLI	GKGCMC	2 cut(s)	273, 440
BstV1I	GCAGC	4 cut(s)	173, 800, 1063, 1169
BstV2I	GAAGAC	3 cut(s)	118, 502, 977
BstX2I	RGATCY	2 cut(s)	93, 695
BstXI	CCANNNNNNTGG	1 cut(s)	919
BstYI	RGATCY	2 cut(s)	93, 695
BsuRI	GGCC	4 cut(s)	5, 288, 438, 911
BtsCI	GGATG	4 cut(s)	411, 433, 928, 996
BtsI	GCAGTG	1 cut(s)	791
BtsIMutI	CAGTG	2 cut(s)	756, 791
BveI	ACCTGC	1 cut(s)	65
Cac8I	GCNNGC	4 cut(s)	159, 563, 1144, 1155
CaiI	CAGNNNCTG	1 cut(s)	584
CciI	TCATGA	1 cut(s)	315
Cfr10I	RCCGGY	1 cut(s)	873
Cfr13I	GGNCC	3 cut(s)	436, 437, 1148
CpoI	CGGWCCG	1 cut(s)	1148
CseI	GACGC	2 cut(s)	180, 992
Csp6I	GTAC	3 cut(s)	649, 754, 830
CspI	CGGWCCG	1 cut(s)	1148
CviQI	GTAC	3 cut(s)	649, 754, 830
DdeI	CTNAG	6 cut(s)	28, 585, 600, 633, 705, 886
DpnI	GATC	2 cut(s)	95, 697
DpnII	GATC	2 cut(s)	93, 695
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	24
Eco130I	CCWWGG	4 cut(s)	61, 192, 912, 975
Eco24I	GRGCYC	1 cut(s)	440
Eco47I	GGWCC	1 cut(s)	1148
EcoO109I	RGGNCCY	2 cut(s)	436, 437
EcoT14I	CCWWGG	4 cut(s)	61, 192, 912, 975
EcoT38I	GRGCYC	1 cut(s)	440
ErhI	CCWWGG	4 cut(s)	61, 192, 912, 975
FaqI	GGGAC	2 cut(s)	679, 990
FauNDI	CATATG	2 cut(s)	712, 778
FblI	GTMKAC	1 cut(s)	1050
Fnu4HI	GCNGC	4 cut(s)	162, 789, 1077, 1158
FokI	GGATG	4 cut(s)	418, 440, 935, 983
FriOI	GRGCYC	1 cut(s)	440
Fsp4HI	GCNGC	4 cut(s)	162, 789, 1077, 1158
GluI	GCNGC	4 cut(s)	162, 789, 1077, 1158
HaeIII	GGCC	4 cut(s)	5, 288, 438, 911
HapII	CCGG	1 cut(s)	874
HgaI	GACGC	2 cut(s)	180, 992
Hin1I	GRCGYC	1 cut(s)	340
HinfI	GANTC	2 cut(s)	394, 1064
HpaII	CCGG	1 cut(s)	874
HphI	GGTGA	1 cut(s)	33
Hpy166II	GTNNAC	3 cut(s)	754, 756, 1051
Hpy188I	TCNGA	5 cut(s)	202, 349, 546, 700, 748
Hpy188III	TCNNGA	6 cut(s)	150, 316, 515, 1070, 1119, 1167
Hpy8I	GTNNAC	3 cut(s)	754, 756, 1051
Hpy99I	CGWCG	1 cut(s)	342
HpyAV	CCTTC	8 cut(s)	115, 119, 147, 150, 306, 450, 534, 639
HpyCH4III	ACNGT	1 cut(s)	760
HpyCH4IV	ACGT	1 cut(s)	340
HpyCH4V	TGCA	3 cut(s)	482, 926, 1079
HpyF10VI	GCNNNNNNNGC	2 cut(s)	223, 558
HpyF3I	CTNAG	6 cut(s)	28, 585, 600, 633, 705, 886
HpySE526I	ACGT	1 cut(s)	340
Hsp92I	GRCGYC	1 cut(s)	340
Kzo9I	GATC	2 cut(s)	93, 695
LmnI	GCTCC	3 cut(s)	37, 514, 1165
Lsp1109I	GCAGC	4 cut(s)	173, 800, 1063, 1169
LweI	GCATC	5 cut(s)	378, 529, 913, 1063, 1095
MaeII	ACGT	1 cut(s)	340
MaeIII	GTNAC	4 cut(s)	355, 580, 801, 948
MalI	GATC	2 cut(s)	95, 697
MboI	GATC	2 cut(s)	93, 695
MboII	GAAGA	8 cut(s)	118, 135, 138, 335, 507, 691, 982, 992
MfeI	CAATTG	1 cut(s)	567
MflI	RGATCY	2 cut(s)	93, 695
MhlI	GDGCHC	2 cut(s)	273, 440
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	594, 673
MnlI	CCTC	9 cut(s)	49, 395, 470, 479, 522, 700, 809, 853, 1122
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	207
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	84, 906
MslI	CAYNNNNRTG	2 cut(s)	314, 896
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	874
MunI	CAATTG	1 cut(s)	567
MwoI	GCNNNNNNNGC	2 cut(s)	223, 558
NdeI	CATATG	2 cut(s)	712, 778
NdeII	GATC	2 cut(s)	93, 695
NlaIV	GGNNCC	4 cut(s)	79, 95, 118, 438
NmuCI	GTSAC	1 cut(s)	801
NspI	RCATGY	4 cut(s)	313, 469, 565, 901
PaeI	GCATGC	1 cut(s)	565
PagI	TCATGA	1 cut(s)	315
PaqCI	CACCTGC	1 cut(s)	65
PciI	ACATGT	2 cut(s)	309, 897
PdmI	GAANNNNTTC	1 cut(s)	207
PfeI	GAWTC	2 cut(s)	394, 1064
PkrI	GCNGC	4 cut(s)	163, 790, 1078, 1159
PscI	ACATGT	2 cut(s)	309, 897
PshAI	GACNNNNGTC	1 cut(s)	343
PspN4I	GGNNCC	4 cut(s)	79, 95, 118, 438
PspOMI	GGGCCC	1 cut(s)	436
PspPI	GGNCC	3 cut(s)	436, 437, 1148
PstNI	CAGNNNCTG	1 cut(s)	584
PsuI	RGATCY	2 cut(s)	93, 695
RsaI	GTAC	3 cut(s)	650, 755, 831
RsaNI	GTAC	3 cut(s)	649, 754, 830
RseI	CAYNNNNRTG	2 cut(s)	314, 896
Rsr2I	CGGWCCG	1 cut(s)	1148
RsrII	CGGWCCG	1 cut(s)	1148
SaqAI	TTAA	2 cut(s)	84, 906
SatI	GCNGC	4 cut(s)	162, 789, 1077, 1158
Sau3AI	GATC	2 cut(s)	93, 695
Sau96I	GGNCC	3 cut(s)	436, 437, 1148
SduI	GDGCHC	2 cut(s)	273, 440
SfaNI	GCATC	5 cut(s)	378, 529, 913, 1063, 1095
SinI	GGWCC	1 cut(s)	1148
SmiMI	CAYNNNNRTG	2 cut(s)	314, 896
SphI	GCATGC	1 cut(s)	565
SsiI	CCGC	4 cut(s)	35, 132, 1146, 1151
SspI	AATATT	1 cut(s)	1013
StyI	CCWWGG	4 cut(s)	61, 192, 912, 975
TaaI	ACNGT	1 cut(s)	760
TaiI	ACGT	1 cut(s)	343
TaqI	TCGA	1 cut(s)	894
TatI	WGTACW	2 cut(s)	648, 753
TfiI	GAWTC	2 cut(s)	394, 1064
Tru1I	TTAA	2 cut(s)	84, 906
Tru9I	TTAA	2 cut(s)	84, 906
TscAI	CASTG	2 cut(s)	763, 798
TseFI	GTSAC	1 cut(s)	801
TseI	GCWGC	4 cut(s)	161, 788, 1076, 1157
Tsp45I	GTSAC	1 cut(s)	801
TspDTI	ATGAA	4 cut(s)	101, 304, 648, 746
TspGWI	ACGGA	1 cut(s)	1056
TspRI	CASTG	2 cut(s)	763, 798
VpaK11BI	GGWCC	1 cut(s)	1148
XapI	RAATTY	2 cut(s)	655, 838
XceI	RCATGY	4 cut(s)	313, 469, 565, 901
XcmI	CCANNNNNNNNNTGG	1 cut(s)	281
XmiI	GTMKAC	1 cut(s)	1050
XmnI	GAANNNNTTC	1 cut(s)	207
ZraI	GACGTC	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.