Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0014451

Physical Location & Seq

Genomic Coordinates Forward (+)

20453904 .. 20457865

Gene Structure 3962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1098400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGCGACTTCTCTGCTCTCTCCGCTCTCAGATCCGCCGTCAGCCGCCTTAGACAGCAGCCAAGGTCGCCAAACAGGCGCCTTTAATGCTGGGATCCCAAACACCTTCGTTCACGGCATCAAGGTCGTCGCTGCACCACCTCTCTTTCCCTTAAGATTGAAAGCTCAGAGACGCTTCAAGTCTGCTTATGCTAAAGCTTCGGACCACGTTCCCAAGCAGTTCCGGCAGGAAAATCTCAAAGATGGAGTGATGGATAATTTTAAGAATGTGCCACATTATCTGTATGGCCTTTCTCCTACCCAAATGGACATGTTCATGACAGAAGATAATCCTGCCAGACGTCAGTCAGAAAAAGTTACAGAGCAAAGCATCTCATCTGCCAACAACTACTTGAATCATGGAGGGATGTATAGTATGTCAGGCATGGATGGCAAGGGCCCTTCACAATACAGTATGAGTGTGAGCATGTATCGGGGAGGTGCAAGAGGAAATGGAAGACCCCGAACTGCTCCTCCTGATCTGCCTTCCTTACTTTTAGATGCTCGGATATGCTATTTGGGCATGCCGATTGTACCAGCAGTAACTGAGCTTCTTGTCGCTCAGTTTATGTGGTTGGATTATGATAACCCTTCTAAGCCTATATACTTGTACATAAATTCATCGGGGACACAGAATGAGAAGATGGAGAGTGTTGGATCTGAAACCGAAGCATATGCCATAGCTGACATGATGAGTTATGTCAAATCAGATGTGTATACTGTGAATTGTGGCATGGCATATGGTCAAGCCGCACTGCTTCTGTCACTTGGGGCAAAGGGTTATCGTGCCGTACAGCCAAATTCCTCCACAAAATTATATTTACCAAAGGTCAGCAGGTCAAGTGGGTCAGTCATCGACATGTGGATTAAGGCCAAGGAGCTGGATGCAAACACAGAGTATTACATTGATTTACTTGCAAAGGGAACAGGGAAGTCCAAGGAAGAACTATCTAAAGATGTCCGGCGGCCTAAATATTTTCAAGCACAAGAAGCCATAGAGTATGGAATCGTAGACAAGATAATCGACTCACGTGATGCAGCATTTGAGAAACGGAATTACGATGAGATGCTTTCGCAATCACGAGCTATGAGGAGAGGAGCAGTGGGCGGTCCACAAGCAGCTCCATCTGGATTCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009368 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009840 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022613 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

393

Amino Acids

43.16

Weight (kDa)

9.08

Isoelectric Point (pI)

49.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLP_protease	PF00574	175 - 356	2e-38	Clp protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49970
fragaria_vesca	FvH4_2g04150
malus_domestica	MD05G1098400.v1.1 MD10G1104200.v1.1
prunus_persica	Prupe.8G143200_v2.0.a1
pyrus_communis	pycom05g09630 pycom10g08980
rosa_chinensis	RchiOBHm_Chr6g0253511
rosa_laevigata	RLG00000015013
rosa_multiflora	Rmu_ssc0000079.1_g000005
rosa_roxburghii	Rroxscaffold_7G00211820
rosa_rugosa	Rorug05G0544700 Rorug05G0544700
rosa_samantha	Rh6AG059800 Rh6BG053800 Rh6DG051100
rosa_wichuraiana	Rw6G005320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	343
Acc36I	ACCTGC	1 cut(s)	864
AccB1I	GGYRCC	1 cut(s)	77
AccBSI	CCGCTC	1 cut(s)	25
AccI	GTMKAC	2 cut(s)	755, 1050
AciI	CCGC	6 cut(s)	23, 35, 45, 789, 1003, 1146
AclWI	GGATC	4 cut(s)	26, 88, 101, 703
AcsI	RAATTY	2 cut(s)	655, 838
AcvI	CACGTG	1 cut(s)	1070
AcyI	GRCGYC	2 cut(s)	78, 340
AfaI	GTAC	3 cut(s)	573, 650, 831
AflII	CTTAAG	1 cut(s)	151
AflIII	ACRYGT	2 cut(s)	309, 897
AgsI	TTSAA	4 cut(s)	160, 178, 394, 1019
AloI	GAACNNNNNNTCC	2 cut(s)	496, 528
AluBI	AGCT	7 cut(s)	164, 197, 589, 722, 919, 1124, 1160
AluI	AGCT	7 cut(s)	164, 197, 589, 722, 919, 1124, 1160
Alw26I	GTCTC	1 cut(s)	163
AlwI	GGATC	4 cut(s)	26, 88, 101, 703
AlwNI	CAGNNNCTG	1 cut(s)	584
AoxI	GGCC	4 cut(s)	286, 436, 909, 1004
ApaI	GGGCCC	1 cut(s)	440
ApeKI	GCWGC	4 cut(s)	57, 131, 1076, 1157
ApoI	RAATTY	2 cut(s)	655, 838
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	4 cut(s)	202, 436, 437, 1148
AvaII	GGWCC	2 cut(s)	202, 1148
BaeGI	GKGCMC	1 cut(s)	440
BamHI	GGATCC	1 cut(s)	93
BanI	GGYRCC	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	440
BarI	GAAGNNNNNNTAC	2 cut(s)	573, 605
BauI	CACGAG	1 cut(s)	1119
BbrPI	CACGTG	1 cut(s)	1070
BbsI	GAAGAC	1 cut(s)	502
BbvI	GCAGC	4 cut(s)	69, 118, 1088, 1169
BccI	CCATC	5 cut(s)	236, 244, 422, 676, 1171
BceAI	ACGGC	3 cut(s)	22, 130, 812
BcgI	CGANNNNNNTGC	5 cut(s)	29, 106, 140, 695, 729
BcoDI	GTCTC	1 cut(s)	163
BfoI	RGCGCY	1 cut(s)	81
BfrI	CTTAAG	1 cut(s)	151
BfuAI	ACCTGC	1 cut(s)	864
BglI	GCCNNNNNGGC	1 cut(s)	75
BisI	GCNGC	7 cut(s)	45, 58, 132, 789, 1004, 1077, 1158
BlsI	GCNGC	7 cut(s)	46, 59, 133, 790, 1005, 1078, 1159
Bme18I	GGWCC	2 cut(s)	202, 1148
BmgT120I	GGNCC	4 cut(s)	202, 436, 437, 1148
BmiI	GGNNCC	3 cut(s)	79, 95, 438
BmsI	GCATC	6 cut(s)	126, 378, 529, 913, 1063, 1095
BoxI	GACNNNNGTC	1 cut(s)	343
BpiI	GAAGAC	1 cut(s)	502
BsaAI	YACGTR	1 cut(s)	1070
BsaHI	GRCGYC	2 cut(s)	78, 340
BsaJI	CCNNGG	3 cut(s)	61, 912, 975
BsaXI	ACNNNNNCTCC	2 cut(s)	496, 526
BseDI	CCNNGG	3 cut(s)	61, 912, 975
BseGI	GGATG	3 cut(s)	411, 433, 928
BseMII	CTCAG	4 cut(s)	42, 179, 576, 614
BseRI	GAGGAG	3 cut(s)	501, 1144, 1149
BseSI	GKGCMC	1 cut(s)	440
BseXI	GCAGC	4 cut(s)	69, 118, 1088, 1169
BseYI	CCCAGC	1 cut(s)	89
BsgI	GTGCAG	1 cut(s)	117
BshFI	GGCC	4 cut(s)	288, 438, 911, 1006
BshNI	GGYRCC	1 cut(s)	77
BsiSI	CCGG	2 cut(s)	223, 1000
BslFI	GGGAC	1 cut(s)	679
BsmAI	GTCTC	1 cut(s)	163
BsmBI	CGTCTC	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	679
BsnI	GGCC	4 cut(s)	288, 438, 911, 1006
Bsp120I	GGGCCC	1 cut(s)	436
Bsp1286I	GDGCHC	1 cut(s)	440
Bsp1407I	TGTACA	1 cut(s)	648
Bsp143I	GATC	4 cut(s)	31, 93, 517, 695
BspACI	CCGC	6 cut(s)	23, 35, 45, 789, 1003, 1146
BspANI	GGCC	4 cut(s)	288, 438, 911, 1006
BspCNI	CTCAG	4 cut(s)	41, 178, 577, 613
BspHI	TCATGA	1 cut(s)	315
BspLI	GGNNCC	3 cut(s)	79, 95, 438
BspMI	ACCTGC	1 cut(s)	864
BspPI	GGATC	4 cut(s)	26, 88, 101, 703
BspT107I	GGYRCC	1 cut(s)	77
BspTI	CTTAAG	1 cut(s)	151
BsrBI	CCGCTC	1 cut(s)	25
BsrGI	TGTACA	1 cut(s)	648
BssECI	CCNNGG	3 cut(s)	61, 912, 975
BssMI	GATC	4 cut(s)	31, 93, 517, 695
BssNAI	GTATAC	1 cut(s)	756
BssNI	GRCGYC	2 cut(s)	78, 340
BssSI	CACGAG	1 cut(s)	1119
BssT1I	CCWWGG	3 cut(s)	61, 912, 975
Bst1107I	GTATAC	1 cut(s)	756
Bst2BI	CACGAG	1 cut(s)	1119
Bst4CI	ACNGT	2 cut(s)	452, 760
BstACI	GRCGYC	2 cut(s)	78, 340
BstAFI	CTTAAG	1 cut(s)	151
BstAUI	TGTACA	1 cut(s)	648
BstBAI	YACGTR	1 cut(s)	1070
BstC8I	GCNNGC	1 cut(s)	563
BstDEI	CTNAG	6 cut(s)	28, 49, 165, 585, 600, 633
BstF5I	GGATG	3 cut(s)	411, 433, 928
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	4 cut(s)	34, 96, 520, 698
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	4 cut(s)	31, 93, 517, 695
BstMWI	GCNNNNNNNGC	8 cut(s)	22, 66, 75, 86, 223, 429, 558, 1028
BstNSI	RCATGY	4 cut(s)	313, 469, 565, 901
BstPAI	GACNNNNGTC	1 cut(s)	343
BstSLI	GKGCMC	1 cut(s)	440
BstV1I	GCAGC	4 cut(s)	69, 118, 1088, 1169
BstV2I	GAAGAC	1 cut(s)	502
BstX2I	RGATCY	3 cut(s)	31, 93, 695
BstXI	CCANNNNNNTGG	1 cut(s)	919
BstYI	RGATCY	3 cut(s)	31, 93, 695
BstZ17I	GTATAC	1 cut(s)	756
BsuRI	GGCC	4 cut(s)	288, 438, 911, 1006
BtsCI	GGATG	3 cut(s)	411, 433, 928
BtsI	GCAGTG	2 cut(s)	791, 1146
BtsIMutI	CAGTG	2 cut(s)	791, 1146
BveI	ACCTGC	1 cut(s)	864
Cac8I	GCNNGC	1 cut(s)	563
CaiI	CAGNNNCTG	1 cut(s)	584
CciI	TCATGA	1 cut(s)	315
CfoI	GCGC	1 cut(s)	80
Cfr13I	GGNCC	4 cut(s)	202, 436, 437, 1148
CseI	GACGC	1 cut(s)	180
Csp6I	GTAC	3 cut(s)	572, 649, 830
CviAII	CATG	9 cut(s)	310, 316, 398, 424, 466, 562, 727, 772, 898
CviQI	GTAC	3 cut(s)	572, 649, 830
DdeI	CTNAG	6 cut(s)	28, 49, 165, 585, 600, 633
DinI	GGCGCC	1 cut(s)	79
DpnI	GATC	4 cut(s)	33, 95, 519, 697
DpnII	GATC	4 cut(s)	31, 93, 517, 695
EciI	GGCGGA	1 cut(s)	24
Eco130I	CCWWGG	3 cut(s)	61, 912, 975
Eco24I	GRGCYC	1 cut(s)	440
Eco47I	GGWCC	2 cut(s)	202, 1148
Eco72I	CACGTG	1 cut(s)	1070
EcoO109I	RGGNCCY	2 cut(s)	436, 437
EcoT14I	CCWWGG	3 cut(s)	61, 912, 975
EcoT38I	GRGCYC	1 cut(s)	440
EgeI	GGCGCC	1 cut(s)	79
EheI	GGCGCC	1 cut(s)	79
ErhI	CCWWGG	3 cut(s)	61, 912, 975
Esp3I	CGTCTC	1 cut(s)	163
FaeI	CATG	9 cut(s)	313, 319, 401, 427, 469, 565, 730, 775, 901
FaqI	GGGAC	1 cut(s)	679
FatI	CATG	9 cut(s)	309, 315, 397, 423, 465, 561, 726, 771, 897
FauNDI	CATATG	2 cut(s)	712, 778
FblI	GTMKAC	2 cut(s)	755, 1050
Fnu4HI	GCNGC	7 cut(s)	45, 58, 132, 789, 1004, 1077, 1158
FokI	GGATG	3 cut(s)	418, 440, 935
FriOI	GRGCYC	1 cut(s)	440
Fsp4HI	GCNGC	7 cut(s)	45, 58, 132, 789, 1004, 1077, 1158
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	7 cut(s)	45, 58, 132, 789, 1004, 1077, 1158
GsaI	CCCAGC	1 cut(s)	93
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	4 cut(s)	288, 438, 911, 1006
HapII	CCGG	2 cut(s)	223, 1000
HgaI	GACGC	1 cut(s)	180
HhaI	GCGC	1 cut(s)	80
Hin1I	GRCGYC	2 cut(s)	78, 340
Hin1II	CATG	9 cut(s)	313, 319, 401, 427, 469, 565, 730, 775, 901
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HindIII	AAGCTT	1 cut(s)	195
HinfI	GANTC	4 cut(s)	394, 1044, 1064, 1170
HpaII	CCGG	2 cut(s)	223, 1000
Hpy166II	GTNNAC	4 cut(s)	112, 756, 1051, 1151
Hpy188I	TCNGA	7 cut(s)	31, 168, 202, 349, 546, 700, 748
Hpy188III	TCNNGA	4 cut(s)	316, 515, 1119, 1167
Hpy8I	GTNNAC	4 cut(s)	112, 756, 1051, 1151
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	4 cut(s)	115, 450, 534, 639
HpyCH4III	ACNGT	2 cut(s)	452, 760
HpyCH4IV	ACGT	3 cut(s)	207, 340, 1069
HpyCH4V	TGCA	5 cut(s)	134, 482, 926, 956, 1076
HpyF10VI	GCNNNNNNNGC	8 cut(s)	22, 66, 75, 86, 223, 429, 558, 1028
HpyF3I	CTNAG	6 cut(s)	28, 49, 165, 585, 600, 633
HpySE526I	ACGT	3 cut(s)	207, 340, 1069
Hsp92I	GRCGYC	2 cut(s)	78, 340
Hsp92II	CATG	9 cut(s)	313, 319, 401, 427, 469, 565, 730, 775, 901
HspAI	GCGC	1 cut(s)	78
KasI	GGCGCC	1 cut(s)	77
Kzo9I	GATC	4 cut(s)	31, 93, 517, 695
LmnI	GCTCC	4 cut(s)	514, 916, 1136, 1165
Lsp1109I	GCAGC	4 cut(s)	69, 118, 1088, 1169
LweI	GCATC	6 cut(s)	126, 378, 529, 913, 1063, 1095
MaeII	ACGT	3 cut(s)	207, 340, 1069
MaeIII	GTNAC	3 cut(s)	355, 580, 801
MalI	GATC	4 cut(s)	33, 95, 519, 697
MbiI	CCGCTC	1 cut(s)	25
MboI	GATC	4 cut(s)	31, 93, 517, 695
MboII	GAAGA	4 cut(s)	335, 507, 691, 992
MflI	RGATCY	3 cut(s)	31, 93, 695
MhlI	GDGCHC	1 cut(s)	440
MluCI	AATT	6 cut(s)	256, 655, 763, 838, 851, 1093
Mly113I	GGCGCC	1 cut(s)	78
MlyI	GAGTC	1 cut(s)	1058
MmeI	TCCRAC	2 cut(s)	594, 673
MnlI	CCTC	8 cut(s)	150, 395, 470, 479, 522, 853, 1122, 1127
MseI	TTAA	4 cut(s)	84, 152, 261, 906
MslI	CAYNNNNRTG	2 cut(s)	314, 896
MspCI	CTTAAG	1 cut(s)	151
MspI	CCGG	2 cut(s)	223, 1000
MwoI	GCNNNNNNNGC	8 cut(s)	22, 66, 75, 86, 223, 429, 558, 1028
NarI	GGCGCC	1 cut(s)	78
NdeI	CATATG	2 cut(s)	712, 778
NdeII	GATC	4 cut(s)	31, 93, 517, 695
NlaIII	CATG	9 cut(s)	313, 319, 401, 427, 469, 565, 730, 775, 901
NlaIV	GGNNCC	3 cut(s)	79, 95, 438
NmuCI	GTSAC	1 cut(s)	801
NspI	RCATGY	4 cut(s)	313, 469, 565, 901
PaeI	GCATGC	1 cut(s)	565
PagI	TCATGA	1 cut(s)	315
PciI	ACATGT	2 cut(s)	309, 897
PfeI	GAWTC	3 cut(s)	394, 1044, 1170
PkrI	GCNGC	7 cut(s)	46, 59, 133, 790, 1005, 1078, 1159
PleI	GAGTC	1 cut(s)	1058
PluTI	GGCGCC	1 cut(s)	81
PmaCI	CACGTG	1 cut(s)	1070
PmlI	CACGTG	1 cut(s)	1070
PpsI	GAGTC	1 cut(s)	1058
Ppu21I	YACGTR	1 cut(s)	1070
PscI	ACATGT	2 cut(s)	309, 897
PshAI	GACNNNNGTC	1 cut(s)	343
PspCI	CACGTG	1 cut(s)	1070
PspFI	CCCAGC	1 cut(s)	89
PspN4I	GGNNCC	3 cut(s)	79, 95, 438
PspOMI	GGGCCC	1 cut(s)	436
PspPI	GGNCC	4 cut(s)	202, 436, 437, 1148
PstNI	CAGNNNCTG	1 cut(s)	584
PsuI	RGATCY	3 cut(s)	31, 93, 695
RsaI	GTAC	3 cut(s)	573, 650, 831
RsaNI	GTAC	3 cut(s)	572, 649, 830
RseI	CAYNNNNRTG	2 cut(s)	314, 896
SaqAI	TTAA	4 cut(s)	84, 152, 261, 906
SatI	GCNGC	7 cut(s)	45, 58, 132, 789, 1004, 1077, 1158
Sau3AI	GATC	4 cut(s)	31, 93, 517, 695
Sau96I	GGNCC	4 cut(s)	202, 436, 437, 1148
SchI	GAGTC	1 cut(s)	1058
SduI	GDGCHC	1 cut(s)	440
SfaNI	GCATC	6 cut(s)	126, 378, 529, 913, 1063, 1095
SfoI	GGCGCC	1 cut(s)	79
SinI	GGWCC	2 cut(s)	202, 1148
SmiMI	CAYNNNNRTG	2 cut(s)	314, 896
SmlI	CTYRAG	1 cut(s)	151
SmoI	CTYRAG	1 cut(s)	151
SphI	GCATGC	1 cut(s)	565
Sse9I	AATT	6 cut(s)	256, 655, 763, 838, 851, 1093
SsiI	CCGC	6 cut(s)	23, 35, 45, 789, 1003, 1146
SspDI	GGCGCC	1 cut(s)	77
SspI	AATATT	1 cut(s)	1013
StyI	CCWWGG	3 cut(s)	61, 912, 975
TaaI	ACNGT	2 cut(s)	452, 760
TaiI	ACGT	3 cut(s)	210, 343, 1072
TaqI	TCGA	2 cut(s)	894, 1062
TasI	AATT	6 cut(s)	256, 655, 763, 838, 851, 1093
TatI	WGTACW	1 cut(s)	648
TauI	GCSGC	3 cut(s)	47, 791, 1006
TfiI	GAWTC	3 cut(s)	394, 1044, 1170
Tru1I	TTAA	4 cut(s)	84, 152, 261, 906
Tru9I	TTAA	4 cut(s)	84, 152, 261, 906
TscAI	CASTG	2 cut(s)	798, 1146
TseFI	GTSAC	1 cut(s)	801
TseI	GCWGC	4 cut(s)	57, 131, 1076, 1157
Tsp45I	GTSAC	1 cut(s)	801
TspDTI	ATGAA	2 cut(s)	304, 648
TspGWI	ACGGA	1 cut(s)	1105
TspRI	CASTG	2 cut(s)	798, 1146
Vha464I	CTTAAG	1 cut(s)	151
VpaK11BI	GGWCC	2 cut(s)	202, 1148
XapI	RAATTY	2 cut(s)	655, 838
XceI	RCATGY	4 cut(s)	313, 469, 565, 901
XmiI	GTMKAC	2 cut(s)	755, 1050
ZraI	GACGTC	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.