Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000079.1

Orthogroup ID

OG0014451

Physical Location & Seq

Genomic Coordinates Reverse (-)

24374 .. 26807

Gene Structure 2434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000079.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

atggccacttctctactttgtccaaacaccttccttcatggcaccaagatcttctctgctcccccaagaagggtctcgcctccgagaagcctcaaatccgtagcttccatggcttcggaccacgttcccaagcagttcagggaagagaacctcaaagatggattgatggataattataagaatgtgccgcaatatctgtatgggctttctccttcccaaatggacatgtttatgactgaagataaccctgcaagacgccagtcggaaagtgttacagagaatagcatttcatccgccaacaactatttgaacaatggagggatgtggagtatgtcaggcatggaagaaaagggccctgcaaaatatagtatgagtgtgagcatgtatcgtggtggtgcaagaggatacgggagaccccgaactgctcctccggatttgccttctttactattggatgctcggatttgctacttgggaatgccgattgtgccagcagtaactgagcttctggttgctcagtttatgtggttggattatgataacccctctaagcctatatatctgtacataaattcatctggaacacagaatgagaagatggagagcgttggatctgaaactgaggcatatgccattgctgacatgatgaaatatgtcaaagcagatgtgtatacagtgaattgtggcatggcctatggtcaagcagcactgcttctgtcacttggagcaaagggttatcgtgctgtgcagccgaattcctccacaaagttatatctgcctaaggtcagcaggtcaagtggatcagtcattgacatgtggattaaggccaaggaactggatgcaaacaccgagtattacattgagctgcttgcgaaaggaacagggaaatccaaggaagaaattgctaaagacatccggcgccccaagtattttcaaggacaagaagctatagaatacgggcttgttgacaagataattgattcacgtgattctgcatttgagaaacggaattacgatgagatgcttactcaatcaagagctatgaggagagccggcgcagggcctcaagcatctccatctggatttaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009368 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009840 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022613 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

363

Amino Acids

40.35

Weight (kDa)

8.82

Isoelectric Point (pI)

52.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49970
fragaria_vesca	FvH4_2g04150
malus_domestica	MD05G1098400.v1.1 MD10G1104200.v1.1
prunus_persica	Prupe.8G143200_v2.0.a1
pyrus_communis	pycom05g09630 pycom10g08980
rosa_chinensis	RchiOBHm_Chr6g0253511
rosa_laevigata	RLG00000015013
rosa_multiflora	Rmu_ssc0000079.1_g000005
rosa_roxburghii	Rroxscaffold_7G00211820
rosa_rugosa	Rorug05G0544700 Rorug05G0544700
rosa_samantha	Rh6AG059800 Rh6BG053800 Rh6DG051100
rosa_wichuraiana	Rw6G005320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	177
Acc36I	ACCTGC	1 cut(s)	780
AccB1I	GGYRCC	2 cut(s)	41, 918
AccI	GTMKAC	1 cut(s)	671
AccIII	TCCGGA	1 cut(s)	430
AciI	CCGC	2 cut(s)	188, 294
AclWI	GGATC	2 cut(s)	619, 808
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	571, 754
AcuI	CTGAAG	1 cut(s)	258
AcvI	CACGTG	1 cut(s)	986
AcyI	GRCGYC	2 cut(s)	256, 919
AfaI	GTAC	1 cut(s)	566
AfiI	CCNNNNNNNGG	3 cut(s)	69, 70, 1059
AflIII	ACRYGT	2 cut(s)	225, 813
AgsI	TTSAA	2 cut(s)	310, 935
AloI	GAACNNNNNNTCC	2 cut(s)	412, 444
AluBI	AGCT	5 cut(s)	104, 505, 865, 947, 1040
AluI	AGCT	5 cut(s)	104, 505, 865, 947, 1040
Alw26I	GTCTC	2 cut(s)	79, 406
AlwI	GGATC	2 cut(s)	619, 808
AlwNI	CAGNNNCTG	1 cut(s)	500
Aor13HI	TCCGGA	1 cut(s)	430
AoxI	GGCC	5 cut(s)	3, 352, 690, 825, 1061
ApaI	GGGCCC	1 cut(s)	356
ApeKI	GCWGC	3 cut(s)	704, 748, 865
ApoI	RAATTY	2 cut(s)	571, 754
AspLEI	GCGC	2 cut(s)	921, 1058
AspS9I	GGNCC	4 cut(s)	118, 352, 353, 1061
AvaII	GGWCC	1 cut(s)	118
AxyI	CCTNAGG	1 cut(s)	780
BaeGI	GKGCMC	1 cut(s)	356
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	41, 918
BanII	GRGCYC	1 cut(s)	356
BarI	GAAGNNNNNNTAC	2 cut(s)	489, 521
BbrPI	CACGTG	1 cut(s)	986
BbvI	GCAGC	3 cut(s)	716, 760, 852
BccI	CCATC	4 cut(s)	152, 160, 592, 1084
BciVI	GTATCC	1 cut(s)	398
BcoDI	GTCTC	2 cut(s)	79, 406
BfmI	CTRYAG	1 cut(s)	948
BfoI	RGCGCY	1 cut(s)	922
BfuAI	ACCTGC	1 cut(s)	780
BfuI	GTATCC	1 cut(s)	398
BglII	AGATCT	1 cut(s)	48
BisI	GCNGC	4 cut(s)	188, 705, 749, 866
BlsI	GCNGC	4 cut(s)	189, 706, 750, 867
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	4 cut(s)	118, 352, 353, 1061
BmiI	GGNNCC	3 cut(s)	43, 354, 920
BmsI	GCATC	4 cut(s)	445, 829, 1011, 1079
BoxI	GACNNNNGTC	1 cut(s)	259
BpuEI	CTTGAG	1 cut(s)	1050
BsaAI	YACGTR	1 cut(s)	986
BsaHI	GRCGYC	2 cut(s)	256, 919
BsaI	GGTCTC	2 cut(s)	79, 406
BsaJI	CCNNGG	3 cut(s)	108, 828, 891
BsaWI	WCCGGW	1 cut(s)	430
BsaXI	ACNNNNNCTCC	2 cut(s)	412, 442
Bsc4I	CCNNNNNNNGG	3 cut(s)	69, 70, 1059
Bse118I	RCCGGY	1 cut(s)	1052
Bse1I	ACTGG	2 cut(s)	259, 840
Bse21I	CCTNAGG	1 cut(s)	780
Bse3DI	GCAATG	1 cut(s)	633
BseAI	TCCGGA	1 cut(s)	430
BseDI	CCNNGG	3 cut(s)	108, 828, 891
BseGI	GGATG	5 cut(s)	290, 327, 460, 844, 912
BseLI	CCNNNNNNNGG	3 cut(s)	69, 70, 1059
BseMI	GCAATG	1 cut(s)	633
BseMII	CTCAG	3 cut(s)	492, 530, 612
BseNI	ACTGG	2 cut(s)	259, 840
BseRI	GAGGAG	2 cut(s)	417, 1060
BseSI	GKGCMC	1 cut(s)	356
BseXI	GCAGC	3 cut(s)	716, 760, 852
BsgI	GTGCAG	1 cut(s)	767
BshFI	GGCC	5 cut(s)	5, 354, 692, 827, 1063
BshNI	GGYRCC	2 cut(s)	41, 918
BsiSI	CCGG	3 cut(s)	431, 916, 1053
BslI	CCNNNNNNNGG	3 cut(s)	69, 70, 1059
BsmAI	GTCTC	2 cut(s)	79, 406
BsmI	GAATGC	1 cut(s)	483
BsnI	GGCC	5 cut(s)	5, 354, 692, 827, 1063
Bso31I	GGTCTC	2 cut(s)	79, 406
Bsp120I	GGGCCC	1 cut(s)	352
Bsp1286I	GDGCHC	1 cut(s)	356
Bsp13I	TCCGGA	1 cut(s)	430
Bsp1407I	TGTACA	1 cut(s)	564
Bsp143I	GATC	3 cut(s)	48, 611, 800
Bsp19I	CCATGG	1 cut(s)	108
BspACI	CCGC	2 cut(s)	188, 294
BspANI	GGCC	5 cut(s)	5, 354, 692, 827, 1063
BspCNI	CTCAG	3 cut(s)	493, 529, 613
BspEI	TCCGGA	1 cut(s)	430
BspLI	GGNNCC	3 cut(s)	43, 354, 920
BspMI	ACCTGC	1 cut(s)	780
BspPI	GGATC	2 cut(s)	619, 808
BspT107I	GGYRCC	2 cut(s)	41, 918
BspTNI	GGTCTC	2 cut(s)	79, 406
BsrDI	GCAATG	1 cut(s)	633
BsrFI	RCCGGY	1 cut(s)	1052
BsrGI	TGTACA	1 cut(s)	564
BsrI	ACTGG	2 cut(s)	259, 840
BssAI	RCCGGY	1 cut(s)	1052
BssECI	CCNNGG	3 cut(s)	108, 828, 891
BssMI	GATC	3 cut(s)	48, 611, 800
BssNAI	GTATAC	1 cut(s)	672
BssNI	GRCGYC	2 cut(s)	256, 919
BssT1I	CCWWGG	3 cut(s)	108, 828, 891
Bst1107I	GTATAC	1 cut(s)	672
Bst4CI	ACNGT	1 cut(s)	676
Bst6I	CTCTTC	1 cut(s)	138
BstACI	GRCGYC	2 cut(s)	256, 919
BstAUI	TGTACA	1 cut(s)	564
BstBAI	YACGTR	1 cut(s)	986
BstC8I	GCNNGC	3 cut(s)	492, 870, 1054
BstDEI	CTNAG	5 cut(s)	501, 516, 549, 621, 780
BstDSI	CCRYGG	1 cut(s)	108
BstF5I	GGATG	5 cut(s)	290, 327, 460, 844, 912
BstH2I	RGCGCY	1 cut(s)	922
BstHHI	GCGC	2 cut(s)	921, 1058
BstKTI	GATC	3 cut(s)	51, 614, 803
BstMAI	GTCTC	2 cut(s)	79, 406
BstMBI	GATC	3 cut(s)	48, 611, 800
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 487
BstNSI	RCATGY	3 cut(s)	229, 385, 817
BstPAI	GACNNNNGTC	1 cut(s)	259
BstSFI	CTRYAG	1 cut(s)	948
BstSLI	GKGCMC	1 cut(s)	356
BstV1I	GCAGC	3 cut(s)	716, 760, 852
BstX2I	RGATCY	2 cut(s)	48, 611
BstXI	CCANNNNNNTGG	1 cut(s)	835
BstYI	RGATCY	2 cut(s)	48, 611
BstZ17I	GTATAC	1 cut(s)	672
Bsu36I	CCTNAGG	1 cut(s)	780
BsuI	GTATCC	1 cut(s)	398
BsuRI	GGCC	5 cut(s)	5, 354, 692, 827, 1063
BtgI	CCRYGG	1 cut(s)	108
BtsCI	GGATG	5 cut(s)	290, 327, 460, 844, 912
BtsI	GCAGTG	1 cut(s)	707
BtsIMutI	CAGTG	2 cut(s)	681, 707
BveI	ACCTGC	1 cut(s)	780
Cac8I	GCNNGC	3 cut(s)	492, 870, 1054
CaiI	CAGNNNCTG	1 cut(s)	500
CfoI	GCGC	2 cut(s)	921, 1058
Cfr10I	RCCGGY	1 cut(s)	1052
Cfr13I	GGNCC	4 cut(s)	118, 352, 353, 1061
CseI	GACGC	1 cut(s)	264
Csp6I	GTAC	1 cut(s)	565
CviAII	CATG	8 cut(s)	38, 109, 226, 340, 382, 643, 688, 814
CviQI	GTAC	1 cut(s)	565
DdeI	CTNAG	5 cut(s)	501, 516, 549, 621, 780
DinI	GGCGCC	1 cut(s)	920
DpnI	GATC	3 cut(s)	50, 613, 802
DpnII	GATC	3 cut(s)	48, 611, 800
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
EciI	GGCGGA	1 cut(s)	283
Eco130I	CCWWGG	3 cut(s)	108, 828, 891
Eco24I	GRGCYC	1 cut(s)	356
Eco31I	GGTCTC	2 cut(s)	79, 406
Eco47I	GGWCC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	258
Eco72I	CACGTG	1 cut(s)	986
Eco81I	CCTNAGG	1 cut(s)	780
EcoO109I	RGGNCCY	3 cut(s)	352, 353, 1061
EcoRI	GAATTC	1 cut(s)	754
EcoT14I	CCWWGG	3 cut(s)	108, 828, 891
EcoT38I	GRGCYC	1 cut(s)	356
EgeI	GGCGCC	1 cut(s)	920
EheI	GGCGCC	1 cut(s)	920
ErhI	CCWWGG	3 cut(s)	108, 828, 891
FaeI	CATG	8 cut(s)	41, 112, 229, 343, 385, 646, 691, 817
FatI	CATG	8 cut(s)	37, 108, 225, 339, 381, 642, 687, 813
FauNDI	CATATG	1 cut(s)	628
FblI	GTMKAC	1 cut(s)	671
Fnu4HI	GCNGC	4 cut(s)	188, 705, 749, 866
FokI	GGATG	5 cut(s)	277, 334, 467, 851, 899
FriOI	GRGCYC	1 cut(s)	356
Fsp4HI	GCNGC	4 cut(s)	188, 705, 749, 866
GlaI	GCGC	2 cut(s)	920, 1057
GluI	GCNGC	4 cut(s)	188, 705, 749, 866
HaeII	RGCGCY	1 cut(s)	922
HaeIII	GGCC	5 cut(s)	5, 354, 692, 827, 1063
HapII	CCGG	3 cut(s)	431, 916, 1053
HgaI	GACGC	1 cut(s)	264
HhaI	GCGC	2 cut(s)	921, 1058
Hin1I	GRCGYC	2 cut(s)	256, 919
Hin1II	CATG	8 cut(s)	41, 112, 229, 343, 385, 646, 691, 817
Hin6I	GCGC	2 cut(s)	919, 1056
HinP1I	GCGC	2 cut(s)	919, 1056
HincII	GTYRAC	1 cut(s)	967
HindII	GTYRAC	1 cut(s)	967
HinfI	GANTC	2 cut(s)	980, 989
HpaII	CCGG	3 cut(s)	431, 916, 1053
Hpy166II	GTNNAC	2 cut(s)	672, 967
Hpy188I	TCNGA	5 cut(s)	84, 118, 265, 462, 616
Hpy188III	TCNNGA	4 cut(s)	431, 579, 1035, 1080
Hpy8I	GTNNAC	2 cut(s)	672, 967
HpyAV	CCTTC	5 cut(s)	40, 44, 63, 222, 450
HpyCH4III	ACNGT	1 cut(s)	676
HpyCH4IV	ACGT	2 cut(s)	123, 985
HpyCH4V	TGCA	6 cut(s)	251, 359, 398, 748, 842, 995
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 487
HpyF3I	CTNAG	5 cut(s)	501, 516, 549, 621, 780
HpySE526I	ACGT	2 cut(s)	123, 985
Hsp92I	GRCGYC	2 cut(s)	256, 919
Hsp92II	CATG	8 cut(s)	41, 112, 229, 343, 385, 646, 691, 817
HspAI	GCGC	2 cut(s)	919, 1056
KasI	GGCGCC	1 cut(s)	918
Kpn2I	TCCGGA	1 cut(s)	430
KroI	GCCGGC	1 cut(s)	1052
KroNI	GCCGGC	1 cut(s)	1054
Kzo9I	GATC	3 cut(s)	48, 611, 800
LmnI	GCTCC	3 cut(s)	64, 430, 725
Lsp1109I	GCAGC	3 cut(s)	716, 760, 852
LweI	GCATC	4 cut(s)	445, 829, 1011, 1079
MaeII	ACGT	2 cut(s)	123, 985
MaeIII	GTNAC	3 cut(s)	271, 496, 717
MalI	GATC	3 cut(s)	50, 613, 802
MboI	GATC	3 cut(s)	48, 611, 800
MboII	GAAGA	6 cut(s)	43, 155, 251, 356, 607, 908
MflI	RGATCY	2 cut(s)	48, 611
MhlI	GDGCHC	1 cut(s)	356
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	7 cut(s)	172, 571, 679, 754, 900, 975, 1009
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	919
MmeI	TCCRAC	3 cut(s)	243, 510, 589
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	430
MroNI	GCCGGC	1 cut(s)	1052
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	822
MslI	CAYNNNNRTG	2 cut(s)	230, 812
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	3 cut(s)	431, 916, 1053
Mva1269I	GAATGC	1 cut(s)	483
MwoI	GCNNNNNNNGC	2 cut(s)	110, 487
NaeI	GCCGGC	1 cut(s)	1054
NarI	GGCGCC	1 cut(s)	919
NcoI	CCATGG	1 cut(s)	108
NdeI	CATATG	1 cut(s)	628
NdeII	GATC	3 cut(s)	48, 611, 800
NgoMIV	GCCGGC	1 cut(s)	1052
NlaIII	CATG	8 cut(s)	41, 112, 229, 343, 385, 646, 691, 817
NlaIV	GGNNCC	3 cut(s)	43, 354, 920
NmuCI	GTSAC	1 cut(s)	717
NspI	RCATGY	3 cut(s)	229, 385, 817
PciI	ACATGT	2 cut(s)	225, 813
PctI	GAATGC	1 cut(s)	483
PdiI	GCCGGC	1 cut(s)	1054
PfeI	GAWTC	2 cut(s)	980, 989
PkrI	GCNGC	4 cut(s)	189, 706, 750, 867
PluTI	GGCGCC	1 cut(s)	922
PmaCI	CACGTG	1 cut(s)	986
PmlI	CACGTG	1 cut(s)	986
Ppu21I	YACGTR	1 cut(s)	986
PscI	ACATGT	2 cut(s)	225, 813
PshAI	GACNNNNGTC	1 cut(s)	259
PsiI	TTATAA	1 cut(s)	177
PspCI	CACGTG	1 cut(s)	986
PspN4I	GGNNCC	3 cut(s)	43, 354, 920
PspOMI	GGGCCC	1 cut(s)	352
PspPI	GGNCC	4 cut(s)	118, 352, 353, 1061
PstNI	CAGNNNCTG	1 cut(s)	500
PsuI	RGATCY	2 cut(s)	48, 611
RsaI	GTAC	1 cut(s)	566
RsaNI	GTAC	1 cut(s)	565
RseI	CAYNNNNRTG	2 cut(s)	230, 812
SaqAI	TTAA	1 cut(s)	822
SatI	GCNGC	4 cut(s)	188, 705, 749, 866
Sau3AI	GATC	3 cut(s)	48, 611, 800
Sau96I	GGNCC	4 cut(s)	118, 352, 353, 1061
SduI	GDGCHC	1 cut(s)	356
SfaNI	GCATC	4 cut(s)	445, 829, 1011, 1079
SfcI	CTRYAG	1 cut(s)	948
SfoI	GGCGCC	1 cut(s)	920
SinI	GGWCC	1 cut(s)	118
SmiMI	CAYNNNNRTG	2 cut(s)	230, 812
SmlI	CTYRAG	1 cut(s)	1065
SmoI	CTYRAG	1 cut(s)	1065
Sse9I	AATT	7 cut(s)	172, 571, 679, 754, 900, 975, 1009
SsiI	CCGC	2 cut(s)	188, 294
SspDI	GGCGCC	1 cut(s)	918
StyI	CCWWGG	3 cut(s)	108, 828, 891
TaaI	ACNGT	1 cut(s)	676
TaiI	ACGT	2 cut(s)	126, 988
TasI	AATT	7 cut(s)	172, 571, 679, 754, 900, 975, 1009
TatI	WGTACW	1 cut(s)	564
TauI	GCSGC	1 cut(s)	190
TfiI	GAWTC	2 cut(s)	980, 989
Tru1I	TTAA	1 cut(s)	822
Tru9I	TTAA	1 cut(s)	822
TscAI	CASTG	2 cut(s)	681, 714
TseFI	GTSAC	1 cut(s)	717
TseI	GCWGC	3 cut(s)	704, 748, 865
Tsp45I	GTSAC	1 cut(s)	717
TspDTI	ATGAA	4 cut(s)	26, 279, 564, 662
TspGWI	ACGGA	2 cut(s)	88, 1021
TspRI	CASTG	2 cut(s)	681, 714
VpaK11BI	GGWCC	1 cut(s)	118
XapI	RAATTY	2 cut(s)	571, 754
XceI	RCATGY	3 cut(s)	229, 385, 817
XmiI	GTMKAC	1 cut(s)	671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.