ATP-dependent Clp protease proteolytic
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G14820 AT2G14820 |
| fragaria_vesca | FvH4_2g04110 FvH4_2g04110 FvH4_2g04110 FvH4_2g04110 |
| malus_domestica | MD05G1098200.v1.1 MD10G1103900.v1.1 |
| prunus_persica | Prupe.8G142300_v2.0.a1 Prupe.8G142300_v2.0.a1 Prupe.8G142300_v2.0.a1 |
| pyrus_communis | pycom05g09610 pycom10g08930 |
| rosa_chinensis | RchiOBHm_Chr6g0253481 |
| rosa_laevigata | RLG00000015016 |
| rosa_multiflora | Rmu_sc0030462.1_g000001 Rmu_ssc0000079.1_g000008 |
| rosa_roxburghii | Rroxscaffold_7G00211860 |
| rosa_rugosa | Rorug05G0544500 Rorug05G0544600 Rorug05G0544700 Rorug05G0544700 |
| rosa_samantha | Rh3CG324600 Rh3DG323200 Rh6AG059600 Rh6BG053600 Rh6CG050700 Rh6DG047400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 3 cut(s) | 16, 169, 184 |
| AfaI | GTAC | 1 cut(s) | 156 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 122 |
| AluBI | AGCT | 1 cut(s) | 104 |
| AluI | AGCT | 1 cut(s) | 104 |
| Alw26I | GTCTC | 1 cut(s) | 131 |
| AlwI | GGATC | 3 cut(s) | 16, 169, 184 |
| AspS9I | GGNCC | 1 cut(s) | 125 |
| AvaII | GGWCC | 1 cut(s) | 125 |
| BcoDI | GTCTC | 1 cut(s) | 131 |
| BfaI | CTAG | 1 cut(s) | 158 |
| BglII | AGATCT | 1 cut(s) | 191 |
| BmcAI | AGTACT | 1 cut(s) | 156 |
| Bme18I | GGWCC | 1 cut(s) | 125 |
| BmgT120I | GGNCC | 1 cut(s) | 125 |
| Bpu10I | CCTNAGC | 1 cut(s) | 204 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 122 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 122 |
| BseMII | CTCAG | 1 cut(s) | 195 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 122 |
| BsmAI | GTCTC | 1 cut(s) | 131 |
| Bsp143I | GATC | 4 cut(s) | 8, 161, 176, 191 |
| BspCNI | CTCAG | 1 cut(s) | 196 |
| BspPI | GGATC | 3 cut(s) | 16, 169, 184 |
| BssMI | GATC | 4 cut(s) | 8, 161, 176, 191 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 214 |
| BstC8I | GCNNGC | 1 cut(s) | 69 |
| BstDEI | CTNAG | 2 cut(s) | 95, 204 |
| BstKTI | GATC | 4 cut(s) | 11, 164, 179, 194 |
| BstMAI | GTCTC | 1 cut(s) | 131 |
| BstMBI | GATC | 4 cut(s) | 8, 161, 176, 191 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 214 |
| BstNSI | RCATGY | 1 cut(s) | 71 |
| BstX2I | RGATCY | 2 cut(s) | 161, 191 |
| BstYI | RGATCY | 2 cut(s) | 161, 191 |
| Cac8I | GCNNGC | 1 cut(s) | 69 |
| Cfr13I | GGNCC | 1 cut(s) | 125 |
| Csp6I | GTAC | 1 cut(s) | 155 |
| CviAII | CATG | 2 cut(s) | 68, 141 |
| CviJI | RGCY | 1 cut(s) | 104 |
| CviKI_1 | RGCY | 1 cut(s) | 104 |
| CviQI | GTAC | 1 cut(s) | 155 |
| DdeI | CTNAG | 2 cut(s) | 95, 204 |
| DpnI | GATC | 4 cut(s) | 10, 163, 178, 193 |
| DpnII | GATC | 4 cut(s) | 8, 161, 176, 191 |
| Eco47I | GGWCC | 1 cut(s) | 125 |
| FaeI | CATG | 2 cut(s) | 71, 144 |
| FaiI | YATR | 3 cut(s) | 18, 69, 142 |
| FatI | CATG | 2 cut(s) | 67, 140 |
| FspBI | CTAG | 1 cut(s) | 158 |
| Hin1II | CATG | 2 cut(s) | 71, 144 |
| HinfI | GANTC | 3 cut(s) | 199, 233, 248 |
| Hpy166II | GTNNAC | 1 cut(s) | 61 |
| Hpy188I | TCNGA | 2 cut(s) | 152, 238 |
| Hpy188III | TCNNGA | 2 cut(s) | 203, 245 |
| Hpy8I | GTNNAC | 1 cut(s) | 61 |
| HpyAV | CCTTC | 1 cut(s) | 205 |
| HpyCH4V | TGCA | 2 cut(s) | 28, 217 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 214 |
| HpyF3I | CTNAG | 2 cut(s) | 95, 204 |
| Hsp92II | CATG | 2 cut(s) | 71, 144 |
| Kzo9I | GATC | 4 cut(s) | 8, 161, 176, 191 |
| LpnPI | CCDG | 4 cut(s) | 36, 47, 57, 216 |
| MaeI | CTAG | 1 cut(s) | 158 |
| MalI | GATC | 4 cut(s) | 10, 163, 178, 193 |
| MboI | GATC | 4 cut(s) | 8, 161, 176, 191 |
| MboII | GAAGA | 2 cut(s) | 239, 242 |
| MflI | RGATCY | 2 cut(s) | 161, 191 |
| MlyI | GAGTC | 1 cut(s) | 208 |
| MmeI | TCCRAC | 1 cut(s) | 88 |
| MnlI | CCTC | 1 cut(s) | 138 |
| MslI | CAYNNNNRTG | 1 cut(s) | 72 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 214 |
| NdeII | GATC | 4 cut(s) | 8, 161, 176, 191 |
| NlaIII | CATG | 2 cut(s) | 71, 144 |
| NspI | RCATGY | 1 cut(s) | 71 |
| PaeI | GCATGC | 1 cut(s) | 71 |
| PfeI | GAWTC | 2 cut(s) | 233, 248 |
| PleI | GAGTC | 1 cut(s) | 207 |
| PpsI | GAGTC | 1 cut(s) | 207 |
| PspPI | GGNCC | 1 cut(s) | 125 |
| PsuI | RGATCY | 2 cut(s) | 161, 191 |
| RsaI | GTAC | 1 cut(s) | 156 |
| RsaNI | GTAC | 1 cut(s) | 155 |
| RseI | CAYNNNNRTG | 1 cut(s) | 72 |
| Sau3AI | GATC | 4 cut(s) | 8, 161, 176, 191 |
| Sau96I | GGNCC | 1 cut(s) | 125 |
| ScaI | AGTACT | 1 cut(s) | 156 |
| SchI | GAGTC | 1 cut(s) | 208 |
| SetI | ASST | 2 cut(s) | 106, 216 |
| SinI | GGWCC | 1 cut(s) | 125 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 72 |
| SphI | GCATGC | 1 cut(s) | 71 |
| SspMI | CTAG | 1 cut(s) | 158 |
| TatI | WGTACW | 1 cut(s) | 154 |
| TfiI | GAWTC | 2 cut(s) | 233, 248 |
| VpaK11BI | GGWCC | 1 cut(s) | 125 |
| XceI | RCATGY | 1 cut(s) | 71 |
| XspI | CTAG | 1 cut(s) | 158 |
| ZrmI | AGTACT | 1 cut(s) | 156 |