Rmu_ssc0000079.1_g000008

NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000079.1
OG0005585
Physical Location & Seq
Forward (+)
50970 .. 52946
1977 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000079.1_g000008.1.cds

Sequence Viewer

Length: 390 bp
atgaagtttatgaaacttggatcaaagccggattcctttcagactgatggcaataatgttaggtatgtggcagctgatttggaaacagatatcatcgttaatgttggagtttcaaagttttatctacacaagtttcctcttctatcaaagagtggccgcttacagaaattagcaaacaccaatgagtcgaaacctttggaaattcacatttcagacattcctggtggccctgctgcatttgagatatgtgctccaatgtctagagttccaactgtcaggcctaactgtgtttttgttaaatattctctaccaatgctatattatcagattattaatcaaaaccatggattaggttggaacatgaatgactgcttcctatggacattttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

129

Amino Acids

14.6

Weight (kDa)

8.81

Isoelectric Point (pI)

34.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 157
AclWI GGATC 1 cut(s) 28
AcoI YGGCCR 1 cut(s) 154
AcsI RAATTY 1 cut(s) 201
AgsI TTSAA 1 cut(s) 114
AjnI CCWGG 1 cut(s) 220
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
Alw21I GWGCWC 1 cut(s) 253
AlwI GGATC 1 cut(s) 28
AoxI GGCC 3 cut(s) 154, 226, 278
ApeKI GCWGC 2 cut(s) 71, 233
ApoI RAATTY 1 cut(s) 201
AseI ATTAAT 1 cut(s) 333
AspS9I GGNCC 1 cut(s) 227
Bbv12I GWGCWC 1 cut(s) 253
BbvI GCAGC 2 cut(s) 83, 220
BccI CCATC 1 cut(s) 41
BciT130I CCWGG 1 cut(s) 222
BfaI CTAG 1 cut(s) 261
BisI GCNGC 3 cut(s) 72, 157, 234
BlsI GCNGC 3 cut(s) 73, 158, 235
Bme1390I CCNGG 1 cut(s) 222
BmgT120I GGNCC 1 cut(s) 227
BmrFI CCNGG 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 343
BseBI CCWGG 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 343
BseXI GCAGC 2 cut(s) 83, 220
BshFI GGCC 3 cut(s) 156, 228, 280
BsiHKAI GWGCWC 1 cut(s) 253
BsiSI CCGG 1 cut(s) 29
BsnI GGCC 3 cut(s) 156, 228, 280
Bsp1286I GDGCHC 1 cut(s) 253
Bsp143I GATC 1 cut(s) 20
Bsp19I CCATGG 1 cut(s) 343
BspACI CCGC 1 cut(s) 157
BspANI GGCC 3 cut(s) 156, 228, 280
BspPI GGATC 1 cut(s) 28
BssECI CCNNGG 1 cut(s) 343
BssMI GATC 1 cut(s) 20
BssT1I CCWWGG 1 cut(s) 343
Bst2UI CCWGG 1 cut(s) 222
Bst4CI ACNGT 2 cut(s) 274, 287
Bst6I CTCTTC 1 cut(s) 144
BstDSI CCRYGG 1 cut(s) 343
BstKTI GATC 1 cut(s) 23
BstMBI GATC 1 cut(s) 20
BstNI CCWGG 1 cut(s) 222
BstSCI CCNGG 1 cut(s) 220
BstV1I GCAGC 2 cut(s) 83, 220
BsuRI GGCC 3 cut(s) 156, 228, 280
BtgI CCRYGG 1 cut(s) 343
Cfr13I GGNCC 1 cut(s) 227
CviAII CATG 2 cut(s) 344, 361
CviJI RGCY 5 cut(s) 28, 74, 156, 228, 280
CviKI_1 RGCY 5 cut(s) 28, 74, 156, 228, 280
DpnI GATC 1 cut(s) 22
DpnII GATC 1 cut(s) 20
EaeI YGGCCR 1 cut(s) 154
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Eco130I CCWWGG 1 cut(s) 343
Eco147I AGGCCT 1 cut(s) 280
Eco32I GATATC 1 cut(s) 91
EcoRII CCWGG 1 cut(s) 220
EcoRV GATATC 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 343
ErhI CCWWGG 1 cut(s) 343
FaeI CATG 2 cut(s) 347, 364
FaiI YATR 7 cut(s) 11, 66, 247, 319, 345, 362, 379
FatI CATG 2 cut(s) 343, 360
Fnu4HI GCNGC 3 cut(s) 72, 157, 234
Fsp4HI GCNGC 3 cut(s) 72, 157, 234
FspBI CTAG 1 cut(s) 261
GluI GCNGC 3 cut(s) 72, 157, 234
HaeIII GGCC 3 cut(s) 156, 228, 280
HapII CCGG 1 cut(s) 29
Hin1II CATG 2 cut(s) 347, 364
HinfI GANTC 2 cut(s) 32, 185
HpaII CCGG 1 cut(s) 29
Hpy188I TCNGA 3 cut(s) 42, 214, 327
Hpy188III TCNNGA 1 cut(s) 261
HpyCH4III ACNGT 2 cut(s) 274, 287
HpyCH4V TGCA 1 cut(s) 236
Hsp92II CATG 2 cut(s) 347, 364
Kzo9I GATC 1 cut(s) 20
LmnI GCTCC 1 cut(s) 256
LpnPI CCDG 5 cut(s) 42, 207, 234, 243, 262
Lsp1109I GCAGC 2 cut(s) 83, 220
MaeI CTAG 1 cut(s) 261
MalI GATC 1 cut(s) 22
MboI GATC 1 cut(s) 20
MboII GAAGA 1 cut(s) 131
MhlI GDGCHC 1 cut(s) 253
MluCI AATT 2 cut(s) 167, 201
MlyI GAGTC 1 cut(s) 194
MmeI TCCRAC 3 cut(s) 85, 293, 335
MnlI CCTC 1 cut(s) 147
MseI TTAA 3 cut(s) 99, 297, 333
MspA1I CMGCKG 1 cut(s) 74
MspI CCGG 1 cut(s) 29
MspR9I CCNGG 1 cut(s) 222
MvaI CCWGG 1 cut(s) 222
NcoI CCATGG 1 cut(s) 343
NdeII GATC 1 cut(s) 20
NlaIII CATG 2 cut(s) 347, 364
PceI AGGCCT 1 cut(s) 280
PfeI GAWTC 1 cut(s) 32
PkrI GCNGC 3 cut(s) 73, 158, 235
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
PshBI ATTAAT 1 cut(s) 333
Psp6I CCWGG 1 cut(s) 220
PspGI CCWGG 1 cut(s) 220
PspPI GGNCC 1 cut(s) 227
PvuII CAGCTG 1 cut(s) 74
SaqAI TTAA 3 cut(s) 99, 297, 333
SatI GCNGC 3 cut(s) 72, 157, 234
Sau3AI GATC 1 cut(s) 20
Sau96I GGNCC 1 cut(s) 227
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 1 cut(s) 222
SduI GDGCHC 1 cut(s) 253
SetI ASST 4 cut(s) 65, 76, 196, 355
Sse9I AATT 2 cut(s) 167, 201
SseBI AGGCCT 1 cut(s) 280
SsiI CCGC 1 cut(s) 157
SspI AATATT 1 cut(s) 302
SspMI CTAG 1 cut(s) 261
StuI AGGCCT 1 cut(s) 280
StyD4I CCNGG 1 cut(s) 220
StyI CCWWGG 1 cut(s) 343
TaaI ACNGT 2 cut(s) 274, 287
TaqI TCGA 1 cut(s) 188
TasI AATT 2 cut(s) 167, 201
TauI GCSGC 1 cut(s) 159
TfiI GAWTC 1 cut(s) 32
Tru1I TTAA 3 cut(s) 99, 297, 333
Tru9I TTAA 3 cut(s) 99, 297, 333
TseI GCWGC 2 cut(s) 71, 233
TspDTI ATGAA 3 cut(s) 17, 26, 377
VspI ATTAAT 1 cut(s) 333
XapI RAATTY 1 cut(s) 201
XbaI TCTAGA 1 cut(s) 260
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.