Rorug05G0544500

N-acetyltransferase HLS1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004042
Physical Location & Seq
Reverse (-)
73296450 .. 73303090
6641 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0544500.1

Sequence Viewer

Length: 1350 bp
ATGTTTCGGAGCCGAGTTGTAGCGTTGTTTGTGAAGGGCAATCACAAGGCTCTGTGCAGTCTGCGAGGAACAACCCCGTCTAGGGTGTTGAAGGAGGAGCCCTATAGATTATTCTCTACGGGGATCACAAGCAAATGCTTGGAGAAATTCCGCTCTTTGCCTAAGGGTCACTATGTGCCATCTATAAGGAATATGTCTACTGTGGCTTCTGTAGGTGTCGAAAGTAAGGAGGGATTGAAGCTTCTTGTAAATGGAGGACCACACGCTCAGAAAATGGTTGGCATTTGGCTTTTTTGCTCTGCTTCTTGGGTATTCAGTATGGTGATACTTGGCGGTATTACACGATTAACGCGATCAGGTCTTTCAATGACTGATTGGAAATTTACTGGGGGCCTCCCTCCTCTATCAGATGGGGACTGGTTGCTTGAGTTTGAGAAGTACAAGCAGTCCCCTGAATATAAACGTGTAAACAAAGGGATGAGTATTGAAAATTTCAAATTTATATACTGGATGGAATATGCACATCGTATGTGGGGAAGGGCATTGGGTATCATGTTCGCATTGCCATTCTCATATTTTCTTCATAAAGGGTATATCACCTTGCCACTTGGATTAAGACTCTCAGCACTCTTTGGCCTTGGTGCTGGGCAGGGTCTAATTGGCTGGTGGATGGTTAAAAGTGGTCTAGAGGAACCAGCATCTGAGTATGCTCAGCCAAGAGTAAGCCCTTACCGTCTTGCAGCTCATCTTACTTCAGCCTTTGCTATATACTGTGGACTTCTATGGACTGGTCTTTCTGTAATGATGCCTGAACCACCTTCTAAATCGCTAGCGTGGGTTAATGGGGCAGCAAAAGTAAAGAGACTCGCTCTTCCTGTCAGCTTGCTTGTTGGAGTTACTGCTGTCTCAGGAGCATTTGTTGCCGGGAATGATGCTGGGCATGCTTATAACACATTTCCAAAGATGGGAGACACATGGATCCCTGAGGATGTTTTTGACATGAAACCACTAATCCGGAACTTCTTTGAGAATACGTCTACTGTGCAGCTCGACCACCGAATCCTTGCAACCACAACTTTAGTTTCAATTGGCGCCCTGTGGTGGTCAACAAGGAAGTTTGACACACACCCAGTAGTTCGATCTTTGATCAGGACTACTCTTAGCATGGCTGCCCTTCAGGTCACACTTGGGGTATCCACACTTCTGTCCTATGTGCCTGTTGAGCTTGGGACCGCACATCAAGCTGGAGCTTTGACTCTTTTGACCTTAATGATCCTTCTGAATCACACGGTGCGCAAGCCATCACCTTTCCTTCTCAAATCTCTGCCTCAAGCTTCCAAGAAAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

449

Amino Acids

49.69

Weight (kDa)

9.92

Isoelectric Point (pI)

40.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX15-CtaA PF02628 95 - 425 4.6e-112 Cytochrome oxidase assembly protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 948
Acc16I TGCGCA 1 cut(s) 1295
AccB1I GGYRCC 1 cut(s) 1091
AccBSI CCGCTC 1 cut(s) 153
AccI GTMKAC 2 cut(s) 197, 1037
AccII CGCG 1 cut(s) 352
AccIII TCCGGA 1 cut(s) 1014
AciI CCGC 3 cut(s) 151, 333, 1233
AclWI GGATC 4 cut(s) 131, 973, 986, 1267
AcsI RAATTY 4 cut(s) 146, 380, 490, 497
AcuI CTGAAG 2 cut(s) 738, 1160
AcyI GRCGYC 1 cut(s) 1092
AdeI CACNNNGTG 2 cut(s) 175, 1291
AfaI GTAC 1 cut(s) 440
AfiI CCNNNNNNNGG 4 cut(s) 81, 82, 965, 1101
AflIII ACRYGT 1 cut(s) 463
AgsI TTSAA 6 cut(s) 91, 238, 366, 488, 496, 1086
AluBI AGCT 8 cut(s) 241, 743, 882, 1048, 1225, 1244, 1250, 1334
AluI AGCT 8 cut(s) 241, 743, 882, 1048, 1225, 1244, 1250, 1334
Alw26I GTCTC 3 cut(s) 856, 910, 963
AlwI GGATC 4 cut(s) 131, 973, 986, 1267
AlwNI CAGNNNCTG 1 cut(s) 701
Aor13HI TCCGGA 1 cut(s) 1014
AoxI GGCC 2 cut(s) 391, 634
ApeKI GCWGC 4 cut(s) 740, 848, 1045, 1169
ApoI RAATTY 4 cut(s) 146, 380, 490, 497
AspLEI GCGC 2 cut(s) 1094, 1296
AspS9I GGNCC 3 cut(s) 257, 391, 1230
AsuC2I CCSGG 1 cut(s) 925
AsuHPI GGTGA 3 cut(s) 334, 589, 1296
AsuNHI GCTAGC 1 cut(s) 829
AvaII GGWCC 2 cut(s) 257, 1230
AxyI CCTNAGG 2 cut(s) 162, 984
BamHI GGATCC 1 cut(s) 978
BanI GGYRCC 1 cut(s) 1091
BanII GRGCYC 1 cut(s) 102
BarI GAAGNNNNNNTAC 2 cut(s) 1185, 1217
BbvI GCAGC 4 cut(s) 752, 860, 1057, 1156
BccI CCATC 6 cut(s) 187, 404, 505, 664, 958, 1309
BciVI GTATCC 1 cut(s) 1204
BclI TGATCA 1 cut(s) 1146
BcnI CCSGG 1 cut(s) 925
BcoDI GTCTC 3 cut(s) 856, 910, 963
BfaI CTAG 4 cut(s) 81, 686, 830, 1348
BfmI CTRYAG 2 cut(s) 103, 210
BfoI RGCGCY 1 cut(s) 1095
BfuI GTATCC 1 cut(s) 1204
BisI GCNGC 4 cut(s) 741, 849, 1046, 1170
BlpI GCTNAGC 1 cut(s) 711
BlsI GCNGC 4 cut(s) 742, 850, 1047, 1171
Bme1390I CCNGG 1 cut(s) 925
Bme18I GGWCC 2 cut(s) 257, 1230
BmgT120I GGNCC 3 cut(s) 257, 391, 1230
BmiI GGNNCC 7 cut(s) 11, 99, 392, 693, 980, 1093, 1231
BmrFI CCNGG 1 cut(s) 925
BmrI ACTGGG 2 cut(s) 396, 1124
BmsI GCATC 3 cut(s) 707, 795, 922
BmtI GCTAGC 1 cut(s) 833
BmuI ACTGGG 2 cut(s) 396, 1124
BplI GAGNNNNNCTC 2 cut(s) 853, 885
BpmI CTGGAG 1 cut(s) 1266
Bpu1102I GCTNAGC 1 cut(s) 711
BpuEI CTTGAG 2 cut(s) 446, 1314
BpuMI CCSGG 1 cut(s) 925
BsaHI GRCGYC 1 cut(s) 1092
BsaJI CCNNGG 1 cut(s) 637
BsaWI WCCGGW 1 cut(s) 1014
BsaXI ACNNNNNCTCC 2 cut(s) 903, 933
Bsc4I CCNNNNNNNGG 4 cut(s) 81, 82, 965, 1101
Bse1I ACTGG 5 cut(s) 391, 422, 512, 793, 1130
Bse21I CCTNAGG 2 cut(s) 162, 984
Bse3DI GCAATG 1 cut(s) 560
BseAI TCCGGA 1 cut(s) 1014
BseDI CCNNGG 1 cut(s) 637
BseGI GGATG 4 cut(s) 483, 516, 675, 994
BseLI CCNNNNNNNGG 4 cut(s) 81, 82, 965, 1101
BseMI GCAATG 1 cut(s) 560
BseMII CTCAG 6 cut(s) 281, 636, 693, 725, 921, 975
BseNI ACTGG 5 cut(s) 391, 422, 512, 793, 1130
BseRI GAGGAG 2 cut(s) 110, 390
BseXI GCAGC 4 cut(s) 752, 860, 1057, 1156
BseYI CCCAGC 2 cut(s) 644, 935
BsgI GTGCAG 2 cut(s) 76, 1064
Bsh1236I CGCG 1 cut(s) 352
BshFI GGCC 2 cut(s) 393, 636
BshNI GGYRCC 1 cut(s) 1091
BsiSI CCGG 2 cut(s) 924, 1015
BslFI GGGAC 3 cut(s) 428, 433, 1243
BslI CCNNNNNNNGG 4 cut(s) 81, 82, 965, 1101
BsmAI GTCTC 3 cut(s) 856, 910, 963
BsmFI GGGAC 3 cut(s) 428, 433, 1243
BsnI GGCC 2 cut(s) 393, 636
Bsp1286I GDGCHC 1 cut(s) 102
Bsp13I TCCGGA 1 cut(s) 1014
Bsp143I GATC 6 cut(s) 123, 353, 978, 1139, 1146, 1272
Bsp1720I GCTNAGC 1 cut(s) 711
BspACI CCGC 3 cut(s) 151, 333, 1233
BspANI GGCC 2 cut(s) 393, 636
BspCNI CTCAG 6 cut(s) 280, 635, 694, 724, 920, 976
BspEI TCCGGA 1 cut(s) 1014
BspFNI CGCG 1 cut(s) 352
BspLI GGNNCC 7 cut(s) 11, 99, 392, 693, 980, 1093, 1231
BspOI GCTAGC 1 cut(s) 833
BspPI GGATC 4 cut(s) 131, 973, 986, 1267
BspQI GCTCTTC 1 cut(s) 876
BspT107I GGYRCC 1 cut(s) 1091
BsrBI CCGCTC 1 cut(s) 153
BsrDI GCAATG 1 cut(s) 560
BsrI ACTGG 5 cut(s) 391, 422, 512, 793, 1130
BssECI CCNNGG 1 cut(s) 637
BssMI GATC 6 cut(s) 123, 353, 978, 1139, 1146, 1272
BssNI GRCGYC 1 cut(s) 1092
BssT1I CCWWGG 1 cut(s) 637
Bst4CI ACNGT 5 cut(s) 202, 734, 773, 1042, 1291
Bst6I CTCTTC 1 cut(s) 876
BstACI GRCGYC 1 cut(s) 1092
BstAPI GCANNNNNTGC 1 cut(s) 920
BstC8I GCNNGC 4 cut(s) 831, 884, 942, 1298
BstDEI CTNAG 8 cut(s) 162, 267, 622, 702, 711, 907, 984, 1160
BstF5I GGATG 4 cut(s) 483, 516, 675, 994
BstFNI CGCG 1 cut(s) 352
BstH2I RGCGCY 1 cut(s) 1095
BstHHI GCGC 2 cut(s) 1094, 1296
BstKTI GATC 6 cut(s) 126, 356, 981, 1142, 1149, 1275
BstMAI GTCTC 3 cut(s) 856, 910, 963
BstMBI GATC 6 cut(s) 123, 353, 978, 1139, 1146, 1272
BstMWI GCNNNNNNNGC 4 cut(s) 920, 941, 1222, 1241
BstNSI RCATGY 1 cut(s) 944
BstSCI CCNGG 1 cut(s) 923
BstSFI CTRYAG 2 cut(s) 103, 210
BstUI CGCG 1 cut(s) 352
BstV1I GCAGC 4 cut(s) 752, 860, 1057, 1156
BstX2I RGATCY 1 cut(s) 978
BstYI RGATCY 1 cut(s) 978
Bsu36I CCTNAGG 2 cut(s) 162, 984
BsuI GTATCC 1 cut(s) 1204
BsuRI GGCC 2 cut(s) 393, 636
BtsCI GGATG 4 cut(s) 483, 516, 675, 994
Cac8I GCNNGC 4 cut(s) 831, 884, 942, 1298
CaiI CAGNNNCTG 1 cut(s) 701
CfoI GCGC 2 cut(s) 1094, 1296
Cfr13I GGNCC 3 cut(s) 257, 391, 1230
Csp6I GTAC 1 cut(s) 439
CviAII CATG 5 cut(s) 553, 941, 975, 1000, 1165
CviQI GTAC 1 cut(s) 439
DdeI CTNAG 8 cut(s) 162, 267, 622, 702, 711, 907, 984, 1160
DinI GGCGCC 1 cut(s) 1093
DpnI GATC 6 cut(s) 125, 355, 980, 1141, 1148, 1274
DpnII GATC 6 cut(s) 123, 353, 978, 1139, 1146, 1272
DraIII CACNNNGTG 2 cut(s) 175, 1291
Eam1104I CTCTTC 1 cut(s) 876
EarI CTCTTC 1 cut(s) 876
Eco130I CCWWGG 1 cut(s) 637
Eco24I GRGCYC 1 cut(s) 102
Eco47I GGWCC 2 cut(s) 257, 1230
Eco57I CTGAAG 2 cut(s) 738, 1160
Eco81I CCTNAGG 2 cut(s) 162, 984
EcoO109I RGGNCCY 1 cut(s) 391
EcoT14I CCWWGG 1 cut(s) 637
EcoT38I GRGCYC 1 cut(s) 102
EgeI GGCGCC 1 cut(s) 1093
EheI GGCGCC 1 cut(s) 1093
ErhI CCWWGG 1 cut(s) 637
FaeI CATG 5 cut(s) 556, 944, 978, 1003, 1168
FaqI GGGAC 3 cut(s) 428, 433, 1243
FatI CATG 5 cut(s) 552, 940, 974, 999, 1164
FbaI TGATCA 1 cut(s) 1146
FblI GTMKAC 2 cut(s) 197, 1037
Fnu4HI GCNGC 4 cut(s) 741, 849, 1046, 1170
FokI GGATG 4 cut(s) 490, 523, 682, 1001
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 4 cut(s) 741, 849, 1046, 1170
FspBI CTAG 4 cut(s) 81, 686, 830, 1348
FspI TGCGCA 1 cut(s) 1295
GlaI GCGC 2 cut(s) 1093, 1295
GluI GCNGC 4 cut(s) 741, 849, 1046, 1170
GsaI CCCAGC 2 cut(s) 648, 939
GsuI CTGGAG 1 cut(s) 1266
HaeII RGCGCY 1 cut(s) 1095
HaeIII GGCC 2 cut(s) 393, 636
HapII CCGG 2 cut(s) 924, 1015
HhaI GCGC 2 cut(s) 1094, 1296
Hin1I GRCGYC 1 cut(s) 1092
Hin1II CATG 5 cut(s) 556, 944, 978, 1003, 1168
Hin6I GCGC 2 cut(s) 1092, 1294
HinP1I GCGC 2 cut(s) 1092, 1294
HincII GTYRAC 1 cut(s) 1107
HindII GTYRAC 1 cut(s) 1107
HindIII AAGCTT 2 cut(s) 239, 1332
HinfI GANTC 5 cut(s) 618, 864, 1059, 1255, 1282
HpaII CCGG 2 cut(s) 924, 1015
HphI GGTGA 3 cut(s) 334, 589, 1296
Hpy166II GTNNAC 5 cut(s) 198, 469, 776, 1038, 1107
Hpy188I TCNGA 5 cut(s) 9, 270, 409, 703, 1281
Hpy188III TCNNGA 4 cut(s) 686, 909, 1015, 1150
Hpy8I GTNNAC 5 cut(s) 198, 469, 776, 1038, 1107
HpyAV CCTTC 7 cut(s) 28, 85, 531, 828, 1184, 1286, 1322
HpyCH4III ACNGT 5 cut(s) 202, 734, 773, 1042, 1291
HpyCH4IV ACGT 2 cut(s) 463, 1034
HpyCH4V TGCA 5 cut(s) 57, 521, 740, 1045, 1067
HpyF10VI GCNNNNNNNGC 4 cut(s) 920, 941, 1222, 1241
HpyF3I CTNAG 8 cut(s) 162, 267, 622, 702, 711, 907, 984, 1160
HpySE526I ACGT 2 cut(s) 463, 1034
Hsp92I GRCGYC 1 cut(s) 1092
Hsp92II CATG 5 cut(s) 556, 944, 978, 1003, 1168
HspAI GCGC 2 cut(s) 1092, 1294
KasI GGCGCC 1 cut(s) 1091
Kpn2I TCCGGA 1 cut(s) 1014
Ksp22I TGATCA 1 cut(s) 1146
Kzo9I GATC 6 cut(s) 123, 353, 978, 1139, 1146, 1272
LguI GCTCTTC 1 cut(s) 876
LmnI GCTCC 4 cut(s) 9, 97, 911, 1247
Lsp1109I GCAGC 4 cut(s) 752, 860, 1057, 1156
LweI GCATC 3 cut(s) 707, 795, 922
MaeI CTAG 4 cut(s) 81, 686, 830, 1348
MaeII ACGT 2 cut(s) 463, 1034
MaeIII GTNAC 3 cut(s) 167, 895, 1180
MalI GATC 6 cut(s) 125, 355, 980, 1141, 1148, 1274
MbiI CCGCTC 1 cut(s) 153
MboI GATC 6 cut(s) 123, 353, 978, 1139, 1146, 1272
MboII GAAGA 2 cut(s) 572, 863
MfeI CAATTG 1 cut(s) 1086
MflI RGATCY 1 cut(s) 978
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 6 cut(s) 146, 380, 490, 497, 657, 1086
Mly113I GGCGCC 1 cut(s) 1092
MlyI GAGTC 3 cut(s) 612, 858, 1249
MmeI TCCRAC 1 cut(s) 871
MroI TCCGGA 1 cut(s) 1014
MseI TTAA 5 cut(s) 347, 614, 675, 840, 1268
MspI CCGG 2 cut(s) 924, 1015
MspR9I CCNGG 1 cut(s) 925
MunI CAATTG 1 cut(s) 1086
MvnI CGCG 1 cut(s) 352
MwoI GCNNNNNNNGC 4 cut(s) 920, 941, 1222, 1241
NarI GGCGCC 1 cut(s) 1092
NciI CCSGG 1 cut(s) 925
NdeII GATC 6 cut(s) 123, 353, 978, 1139, 1146, 1272
NheI GCTAGC 1 cut(s) 829
NlaIII CATG 5 cut(s) 556, 944, 978, 1003, 1168
NlaIV GGNNCC 7 cut(s) 11, 99, 392, 693, 980, 1093, 1231
NmeAIII GCCGAG 1 cut(s) 38
NmuCI GTSAC 2 cut(s) 167, 1180
NsbI TGCGCA 1 cut(s) 1295
NspI RCATGY 1 cut(s) 944
PaeI GCATGC 1 cut(s) 944
PciSI GCTCTTC 1 cut(s) 876
PcsI WCGNNNNNNNCGW 1 cut(s) 349
PfeI GAWTC 2 cut(s) 1059, 1282
PkrI GCNGC 4 cut(s) 742, 850, 1047, 1171
PleI GAGTC 3 cut(s) 612, 858, 1249
PluTI GGCGCC 1 cut(s) 1095
PpsI GAGTC 3 cut(s) 612, 858, 1249
PsiI TTATAA 1 cut(s) 948
PspFI CCCAGC 2 cut(s) 644, 935
PspN4I GGNNCC 7 cut(s) 11, 99, 392, 693, 980, 1093, 1231
PspPI GGNCC 3 cut(s) 257, 391, 1230
PstNI CAGNNNCTG 1 cut(s) 701
PsuI RGATCY 1 cut(s) 978
RsaI GTAC 1 cut(s) 440
RsaNI GTAC 1 cut(s) 439
SapI GCTCTTC 1 cut(s) 876
SaqAI TTAA 5 cut(s) 347, 614, 675, 840, 1268
SatI GCNGC 4 cut(s) 741, 849, 1046, 1170
Sau3AI GATC 6 cut(s) 123, 353, 978, 1139, 1146, 1272
Sau96I GGNCC 3 cut(s) 257, 391, 1230
SchI GAGTC 3 cut(s) 612, 858, 1249
ScrFI CCNGG 1 cut(s) 925
SduI GDGCHC 1 cut(s) 102
SfaNI GCATC 3 cut(s) 707, 795, 922
SfcI CTRYAG 2 cut(s) 103, 210
SfoI GGCGCC 1 cut(s) 1093
SinI GGWCC 2 cut(s) 257, 1230
SmlI CTYRAG 2 cut(s) 425, 1329
SmoI CTYRAG 2 cut(s) 425, 1329
SphI GCATGC 1 cut(s) 944
Sse9I AATT 6 cut(s) 146, 380, 490, 497, 657, 1086
SsiI CCGC 3 cut(s) 151, 333, 1233
SspDI GGCGCC 1 cut(s) 1091
SspMI CTAG 4 cut(s) 81, 686, 830, 1348
StyD4I CCNGG 1 cut(s) 923
StyI CCWWGG 1 cut(s) 637
TaaI ACNGT 5 cut(s) 202, 734, 773, 1042, 1291
TaiI ACGT 2 cut(s) 466, 1037
TaqI TCGA 3 cut(s) 219, 1050, 1138
TasI AATT 6 cut(s) 146, 380, 490, 497, 657, 1086
TatI WGTACW 1 cut(s) 438
TfiI GAWTC 2 cut(s) 1059, 1282
Tru1I TTAA 5 cut(s) 347, 614, 675, 840, 1268
Tru9I TTAA 5 cut(s) 347, 614, 675, 840, 1268
TseFI GTSAC 2 cut(s) 167, 1180
TseI GCWGC 4 cut(s) 740, 848, 1045, 1169
Tsp45I GTSAC 2 cut(s) 167, 1180
TspDTI ATGAA 2 cut(s) 572, 1016
VpaK11BI GGWCC 2 cut(s) 257, 1230
XapI RAATTY 4 cut(s) 146, 380, 490, 497
XbaI TCTAGA 1 cut(s) 685
XceI RCATGY 1 cut(s) 944
XmiI GTMKAC 2 cut(s) 197, 1037
XspI CTAG 4 cut(s) 81, 686, 830, 1348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.