Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004042

Physical Location & Seq

Genomic Coordinates Reverse (-)

12831340 .. 12832271

Gene Structure 932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0146000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGCCGTCACCGCTCAAACTAGAAGACCCGCCCATACACTTTATTACGCTCCCCCCTCTCGCCAAGCCCCATCCGTTAACAAATCGCCTCATTGGCTCGACTTCCTCATTCTCTCTGCCGTTTTGCTCTTTTTCCTTGGGCTGATCGTCGTTGTTGGGCGCATAGCTATTGACAATAGGGTCGAGAAGGCGATTCAGAAGCACGCGGCGGACGGGCTCACAAGGGCGGACTACGCCGCGGCTAGCTGGGGCGCTACCGTTGTGGACCATTCTGAGCCTCGTTATGAGAGGGACTGGCCATGGCTTGGCTGGTGGGGTACGTGGTGGAATGGGGTTCACCATAAAGCCATTCATATGTTGAGCCCTAGTTTCGGAGAGCCAGGCCGGTGTTTTCCCTTGAAAGGGAGGAGTGGCTTTGTTGTGATCAAGCTAAGGGAGCCTATTGTGCCGGAGGCTATTACTATTGAACATGTTTTGGATAGTGTTGTTGATGACCGGTCCGACGCTCCCAAGGATTGCCGTGTCACAGCTTGGTTGCAGCATGATCGATATGATAGCAAGAAGAATGAGTTTGTTTTGGCCGAGTTCAGTTACGACGTTGGGAAGAGCAATGTTCAGACATTTGGTGTGTCGGGACCGGTGGCGAAGGCCCGCGATGAGGCCGTTGTTAACATGGTGGAGTTGCAGTTTGGATCCAACAATGGAAGCCCCGTGTCTACATGCATATATCGGCTCAGAGTTCATGGCCATAAACCTCGATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0006464 GO:0006473 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008080 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009826 GO:0009987 GO:0010033 GO:0016043 GO:0016049 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0036211 GO:0040007 GO:0042221 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060560 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

254

Amino Acids

28.48

Weight (kDa)

8.96

Isoelectric Point (pI)

42.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sad1_UNC	PF07738	113 - 250	6.1e-31	Sad1 / UNC-like C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23060 AT2G23060 AT4G37580 AT4G37580 AT5G67430 AT5G67430
fragaria_vesca	FvH4_1g17420 FvH4_2g04100
malus_domestica	MD02G1183200.v1.1 MD15G1295100.v1.1
prunus_persica	Prupe.6G222600_v2.0.a1 Prupe.8G142200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0107611 RchiOBHm_Chr6g0253471
rosa_laevigata	RLG00000015017 RLG00000017595
rosa_multiflora	Rmu_co8105006.1_g000001 Rmu_sc0000800.1_g000038 Rmu_sc0042258.1_g000001 Rmu_ssc0000079.1_g000009
rosa_roxburghii	Rroxscaffold_2G00136150 Rroxscaffold_7G00211870
rosa_rugosa	Rorug02G0146000 Rorug05G0544500
rosa_samantha	Rh2AG195300 Rh2BG207900 Rh2CG200500 Rh2DG203000 Rh6AG059500 Rh6BG053500 Rh6CG050600 Rh6DG047300
rosa_wichuraiana	Rw2G015480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
AccB7I	CCANNNNNTGG	1 cut(s)	305
AccBSI	CCGCTC	1 cut(s)	14
AccI	GTMKAC	1 cut(s)	716
AccII	CGCG	3 cut(s)	206, 239, 654
AciI	CCGC	8 cut(s)	12, 30, 206, 209, 227, 237, 239, 652
AclWI	GGATC	2 cut(s)	687, 700
AcoI	YGGCCR	4 cut(s)	3, 296, 579, 745
AfaI	GTAC	1 cut(s)	319
AfiI	CCNNNNNNNGG	5 cut(s)	305, 371, 401, 402, 658
AflIII	ACRYGT	1 cut(s)	469
AgeI	ACCGGT	2 cut(s)	495, 637
AgsI	TTSAA	2 cut(s)	400, 467
AjnI	CCWGG	1 cut(s)	379
AluBI	AGCT	4 cut(s)	167, 246, 430, 530
AluI	AGCT	4 cut(s)	167, 246, 430, 530
AlwI	GGATC	2 cut(s)	687, 700
AoxI	GGCC	7 cut(s)	3, 296, 382, 579, 648, 660, 745
ApeKI	GCWGC	1 cut(s)	538
AsiGI	ACCGGT	2 cut(s)	495, 637
AspLEI	GCGC	2 cut(s)	162, 254
AspS9I	GGNCC	4 cut(s)	265, 498, 635, 649
AsuHPI	GGTGA	1 cut(s)	329
AsuNHI	GCTAGC	1 cut(s)	242
AvaII	GGWCC	3 cut(s)	265, 498, 635
BalI	TGGCCA	2 cut(s)	298, 747
BamHI	GGATCC	1 cut(s)	692
BanII	GRGCYC	2 cut(s)	219, 365
BbsI	GAAGAC	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	550
BccI	CCATC	1 cut(s)	79
BceAI	ACGGC	3 cut(s)	104, 504, 647
BcgI	CGANNNNNNTGC	2 cut(s)	527, 561
BciT130I	CCWGG	1 cut(s)	381
BclI	TGATCA	1 cut(s)	423
BfaI	CTAG	3 cut(s)	21, 243, 366
BfoI	RGCGCY	1 cut(s)	255
BglI	GCCNNNNNGGC	1 cut(s)	94
BisI	GCNGC	4 cut(s)	207, 237, 240, 539
BlsI	GCNGC	4 cut(s)	208, 238, 241, 540
Bme1390I	CCNGG	1 cut(s)	381
Bme18I	GGWCC	3 cut(s)	265, 498, 635
BmgT120I	GGNCC	4 cut(s)	265, 498, 635, 649
BmiI	GGNNCC	3 cut(s)	438, 636, 694
BmrFI	CCNGG	1 cut(s)	381
BmtI	GCTAGC	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	31
Bpu10I	CCTNAGC	1 cut(s)	431
Bsa29I	ATCGAT	1 cut(s)	547
BsaAI	YACGTR	1 cut(s)	321
BsaJI	CCNNGG	4 cut(s)	136, 237, 299, 510
BsaWI	WCCGGW	2 cut(s)	495, 637
BsaXI	ACNNNNNCTCC	2 cut(s)	671, 701
Bsc4I	CCNNNNNNNGG	5 cut(s)	305, 371, 401, 402, 658
Bse118I	RCCGGY	3 cut(s)	384, 495, 637
Bse1I	ACTGG	1 cut(s)	299
Bse3DI	GCAATG	1 cut(s)	616
BseBI	CCWGG	1 cut(s)	381
BseCI	ATCGAT	1 cut(s)	547
BseDI	CCNNGG	4 cut(s)	136, 237, 299, 510
BseGI	GGATG	1 cut(s)	71
BseLI	CCNNNNNNNGG	5 cut(s)	305, 371, 401, 402, 658
BseMI	GCAATG	1 cut(s)	616
BseMII	CTCAG	2 cut(s)	264, 748
BseNI	ACTGG	1 cut(s)	299
BseRI	GAGGAG	1 cut(s)	421
BseXI	GCAGC	1 cut(s)	550
BseYI	CCCAGC	1 cut(s)	246
Bsh1236I	CGCG	3 cut(s)	206, 239, 654
Bsh1285I	CGRYCG	1 cut(s)	761
BshFI	GGCC	7 cut(s)	5, 298, 384, 581, 650, 662, 747
BshTI	ACCGGT	2 cut(s)	495, 637
BshVI	ATCGAT	1 cut(s)	547
BsiEI	CGRYCG	1 cut(s)	761
BsiSI	CCGG	4 cut(s)	385, 449, 496, 638
BslFI	GGGAC	2 cut(s)	305, 648
BslI	CCNNNNNNNGG	5 cut(s)	305, 371, 401, 402, 658
BsmFI	GGGAC	2 cut(s)	305, 648
BsnI	GGCC	7 cut(s)	5, 298, 384, 581, 650, 662, 747
Bsp1286I	GDGCHC	2 cut(s)	219, 365
Bsp143I	GATC	5 cut(s)	144, 423, 544, 692, 758
Bsp19I	CCATGG	1 cut(s)	299
BspACI	CCGC	8 cut(s)	12, 30, 206, 209, 227, 237, 239, 652
BspANI	GGCC	7 cut(s)	5, 298, 384, 581, 650, 662, 747
BspCNI	CTCAG	2 cut(s)	265, 747
BspDI	ATCGAT	1 cut(s)	547
BspFNI	CGCG	3 cut(s)	206, 239, 654
BspLI	GGNNCC	3 cut(s)	438, 636, 694
BspOI	GCTAGC	1 cut(s)	246
BspPI	GGATC	2 cut(s)	687, 700
BspQI	GCTCTTC	1 cut(s)	599
BsrBI	CCGCTC	1 cut(s)	14
BsrDI	GCAATG	1 cut(s)	616
BsrFI	RCCGGY	3 cut(s)	384, 495, 637
BsrI	ACTGG	1 cut(s)	299
BssAI	RCCGGY	3 cut(s)	384, 495, 637
BssECI	CCNNGG	4 cut(s)	136, 237, 299, 510
BssMI	GATC	5 cut(s)	144, 423, 544, 692, 758
BssT1I	CCWWGG	3 cut(s)	136, 299, 510
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	1 cut(s)	259
Bst6I	CTCTTC	1 cut(s)	599
BstBAI	YACGTR	1 cut(s)	321
BstC8I	GCNNGC	3 cut(s)	204, 244, 652
BstDEI	CTNAG	3 cut(s)	273, 431, 734
BstDSI	CCRYGG	2 cut(s)	237, 299
BstF5I	GGATG	1 cut(s)	71
BstFNI	CGCG	3 cut(s)	206, 239, 654
BstH2I	RGCGCY	1 cut(s)	255
BstHHI	GCGC	2 cut(s)	162, 254
BstKTI	GATC	5 cut(s)	147, 426, 547, 695, 761
BstMBI	GATC	5 cut(s)	144, 423, 544, 692, 758
BstMCI	CGRYCG	1 cut(s)	761
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 94, 233, 436, 445
BstNI	CCWGG	1 cut(s)	381
BstNSI	RCATGY	2 cut(s)	473, 723
BstSCI	CCNGG	1 cut(s)	379
BstUI	CGCG	3 cut(s)	206, 239, 654
BstV1I	GCAGC	1 cut(s)	550
BstV2I	GAAGAC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	692
BstYI	RGATCY	1 cut(s)	692
Bsu15I	ATCGAT	1 cut(s)	547
BsuRI	GGCC	7 cut(s)	5, 298, 384, 581, 650, 662, 747
BsuTUI	ATCGAT	1 cut(s)	547
BtgI	CCRYGG	2 cut(s)	237, 299
BtgZI	GCGATG	1 cut(s)	669
BtsCI	GGATG	1 cut(s)	71
Cac8I	GCNNGC	3 cut(s)	204, 244, 652
CfoI	GCGC	2 cut(s)	162, 254
Cfr10I	RCCGGY	3 cut(s)	384, 495, 637
Cfr13I	GGNCC	4 cut(s)	265, 498, 635, 649
Cfr42I	CCGCGG	1 cut(s)	240
ClaI	ATCGAT	1 cut(s)	547
CpoI	CGGWCCG	1 cut(s)	498
CseI	GACGC	1 cut(s)	512
Csp6I	GTAC	1 cut(s)	318
CspAI	ACCGGT	2 cut(s)	495, 637
CspI	CGGWCCG	1 cut(s)	498
CviAII	CATG	6 cut(s)	300, 470, 542, 673, 720, 743
CviQI	GTAC	1 cut(s)	318
DdeI	CTNAG	3 cut(s)	273, 431, 734
DpnI	GATC	5 cut(s)	146, 425, 546, 694, 760
DpnII	GATC	5 cut(s)	144, 423, 544, 692, 758
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
EaeI	YGGCCR	4 cut(s)	3, 296, 579, 745
Eam1104I	CTCTTC	1 cut(s)	599
EarI	CTCTTC	1 cut(s)	599
EciI	GGCGGA	2 cut(s)	224, 242
Eco130I	CCWWGG	3 cut(s)	136, 299, 510
Eco24I	GRGCYC	2 cut(s)	219, 365
Eco47I	GGWCC	3 cut(s)	265, 498, 635
EcoRII	CCWGG	1 cut(s)	379
EcoT14I	CCWWGG	3 cut(s)	136, 299, 510
EcoT22I	ATGCAT	1 cut(s)	725
EcoT38I	GRGCYC	2 cut(s)	219, 365
ErhI	CCWWGG	3 cut(s)	136, 299, 510
FaeI	CATG	6 cut(s)	303, 473, 545, 676, 723, 746
FaqI	GGGAC	2 cut(s)	305, 648
FatI	CATG	6 cut(s)	299, 469, 541, 672, 719, 742
FauI	CCCGC	2 cut(s)	37, 659
FauNDI	CATATG	1 cut(s)	354
FbaI	TGATCA	1 cut(s)	423
FblI	GTMKAC	1 cut(s)	716
Fnu4HI	GCNGC	4 cut(s)	207, 237, 240, 539
FokI	GGATG	1 cut(s)	58
FriOI	GRGCYC	2 cut(s)	219, 365
Fsp4HI	GCNGC	4 cut(s)	207, 237, 240, 539
FspBI	CTAG	3 cut(s)	21, 243, 366
GlaI	GCGC	2 cut(s)	161, 253
GluI	GCNGC	4 cut(s)	207, 237, 240, 539
GsaI	CCCAGC	1 cut(s)	250
HaeII	RGCGCY	1 cut(s)	255
HaeIII	GGCC	7 cut(s)	5, 298, 384, 581, 650, 662, 747
HapII	CCGG	4 cut(s)	385, 449, 496, 638
HgaI	GACGC	1 cut(s)	512
HhaI	GCGC	2 cut(s)	162, 254
Hin1II	CATG	6 cut(s)	303, 473, 545, 676, 723, 746
Hin6I	GCGC	2 cut(s)	160, 252
HinP1I	GCGC	2 cut(s)	160, 252
HincII	GTYRAC	2 cut(s)	79, 670
HindII	GTYRAC	2 cut(s)	79, 670
HinfI	GANTC	1 cut(s)	193
HpaI	GTTAAC	2 cut(s)	79, 670
HpaII	CCGG	4 cut(s)	385, 449, 496, 638
HphI	GGTGA	1 cut(s)	329
Hpy166II	GTNNAC	5 cut(s)	79, 265, 337, 670, 717
Hpy188I	TCNGA	6 cut(s)	198, 274, 374, 502, 618, 737
Hpy188III	TCNNGA	2 cut(s)	184, 633
Hpy8I	GTNNAC	5 cut(s)	79, 265, 337, 670, 717
Hpy99I	CGWCG	3 cut(s)	152, 506, 599
HpyAV	CCTTC	2 cut(s)	181, 640
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4IV	ACGT	2 cut(s)	320, 597
HpyCH4V	TGCA	3 cut(s)	538, 685, 723
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 94, 233, 436, 445
HpyF3I	CTNAG	3 cut(s)	273, 431, 734
HpySE526I	ACGT	2 cut(s)	320, 597
Hsp92II	CATG	6 cut(s)	303, 473, 545, 676, 723, 746
HspAI	GCGC	2 cut(s)	160, 252
Ksp22I	TGATCA	1 cut(s)	423
KspAI	GTTAAC	2 cut(s)	79, 670
KspI	CCGCGG	1 cut(s)	240
Kzo9I	GATC	5 cut(s)	144, 423, 544, 692, 758
LguI	GCTCTTC	1 cut(s)	599
LmnI	GCTCC	3 cut(s)	55, 436, 511
LpnPI	CCDG	9 cut(s)	232, 280, 295, 366, 393, 398, 462, 509, 651
Lsp1109I	GCAGC	1 cut(s)	550
MaeI	CTAG	3 cut(s)	21, 243, 366
MaeII	ACGT	2 cut(s)	320, 597
MaeIII	GTNAC	3 cut(s)	7, 523, 590
MalI	GATC	5 cut(s)	146, 425, 546, 694, 760
MbiI	CCGCTC	1 cut(s)	14
MboI	GATC	5 cut(s)	144, 423, 544, 692, 758
MboII	GAAGA	3 cut(s)	36, 574, 616
MflI	RGATCY	1 cut(s)	692
MhlI	GDGCHC	2 cut(s)	219, 365
MlsI	TGGCCA	2 cut(s)	298, 747
MluNI	TGGCCA	2 cut(s)	298, 747
MmeI	TCCRAC	2 cut(s)	525, 720
MnlI	CCTC	9 cut(s)	67, 99, 116, 282, 288, 399, 445, 652, 765
Mox20I	TGGCCA	2 cut(s)	298, 747
Mph1103I	ATGCAT	1 cut(s)	725
MscI	TGGCCA	2 cut(s)	298, 747
MseI	TTAA	2 cut(s)	78, 669
MslI	CAYNNNNRTG	1 cut(s)	353
Msp20I	TGGCCA	2 cut(s)	298, 747
MspA1I	CMGCKG	1 cut(s)	239
MspI	CCGG	4 cut(s)	385, 449, 496, 638
MspR9I	CCNGG	1 cut(s)	381
MvaI	CCWGG	1 cut(s)	381
MvnI	CGCG	3 cut(s)	206, 239, 654
MwoI	GCNNNNNNNGC	5 cut(s)	11, 94, 233, 436, 445
NcoI	CCATGG	1 cut(s)	299
NdeI	CATATG	1 cut(s)	354
NdeII	GATC	5 cut(s)	144, 423, 544, 692, 758
NheI	GCTAGC	1 cut(s)	242
NlaIII	CATG	6 cut(s)	303, 473, 545, 676, 723, 746
NlaIV	GGNNCC	3 cut(s)	438, 636, 694
NmeAIII	GCCGAG	1 cut(s)	607
NmuCI	GTSAC	2 cut(s)	7, 523
NsiI	ATGCAT	1 cut(s)	725
NspI	RCATGY	2 cut(s)	473, 723
PciI	ACATGT	1 cut(s)	469
PciSI	GCTCTTC	1 cut(s)	599
PfeI	GAWTC	1 cut(s)	193
PflMI	CCANNNNNTGG	1 cut(s)	305
PinAI	ACCGGT	2 cut(s)	495, 637
PkrI	GCNGC	4 cut(s)	208, 238, 241, 540
Ple19I	CGATCG	1 cut(s)	761
Ppu21I	YACGTR	1 cut(s)	321
PscI	ACATGT	1 cut(s)	469
Psp6I	CCWGG	1 cut(s)	379
PspFI	CCCAGC	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	379
PspN4I	GGNNCC	3 cut(s)	438, 636, 694
PspPI	GGNCC	4 cut(s)	265, 498, 635, 649
PsuI	RGATCY	1 cut(s)	692
PvuI	CGATCG	1 cut(s)	761
RsaI	GTAC	1 cut(s)	319
RsaNI	GTAC	1 cut(s)	318
RseI	CAYNNNNRTG	1 cut(s)	353
Rsr2I	CGGWCCG	1 cut(s)	498
RsrII	CGGWCCG	1 cut(s)	498
SacII	CCGCGG	1 cut(s)	240
SapI	GCTCTTC	1 cut(s)	599
SaqAI	TTAA	2 cut(s)	78, 669
SatI	GCNGC	4 cut(s)	207, 237, 240, 539
Sau3AI	GATC	5 cut(s)	144, 423, 544, 692, 758
Sau96I	GGNCC	4 cut(s)	265, 498, 635, 649
ScrFI	CCNGG	1 cut(s)	381
SduI	GDGCHC	2 cut(s)	219, 365
SetI	ASST	7 cut(s)	169, 248, 323, 432, 532, 600, 757
Sfr303I	CCGCGG	1 cut(s)	240
SgrBI	CCGCGG	1 cut(s)	240
SinI	GGWCC	3 cut(s)	265, 498, 635
SmiMI	CAYNNNNRTG	1 cut(s)	353
SsiI	CCGC	8 cut(s)	12, 30, 206, 209, 227, 237, 239, 652
SspMI	CTAG	3 cut(s)	21, 243, 366
StyD4I	CCNGG	1 cut(s)	379
StyI	CCWWGG	3 cut(s)	136, 299, 510
TaaI	ACNGT	1 cut(s)	259
TaiI	ACGT	2 cut(s)	323, 600
TaqI	TCGA	4 cut(s)	99, 183, 547, 757
TauI	GCSGC	3 cut(s)	209, 239, 242
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	2 cut(s)	78, 669
Tru9I	TTAA	2 cut(s)	78, 669
TseFI	GTSAC	2 cut(s)	7, 523
TseI	GCWGC	1 cut(s)	538
Tsp45I	GTSAC	2 cut(s)	7, 523
TspDTI	ATGAA	2 cut(s)	341, 731
TspGWI	ACGGA	1 cut(s)	64
Van91I	CCANNNNNTGG	1 cut(s)	305
VpaK11BI	GGWCC	3 cut(s)	265, 498, 635
XceI	RCATGY	2 cut(s)	473, 723
XcmI	CCANNNNNNNNNTGG	1 cut(s)	306
XmiI	GTMKAC	1 cut(s)	716
XspI	CTAG	3 cut(s)	21, 243, 366
Zsp2I	ATGCAT	1 cut(s)	725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.