Rh6AG059500

N-acetyltransferase HLS1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0004042
Physical Location & Seq
Forward (+)
8966837 .. 8968264
1428 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG059500.1

Sequence Viewer

Length: 1098 bp
ATGTCACTCTTTACTGATCTTTTGGGTGACCCGATTTGCCGAATCCGAAACTCGCCCTCGTTCCTCATGCTGGTGGCTGAAATGGGAAAAGAAATCGTTGGGATCATCAGGGGTTGCATCAAAGTCGTTTCTTGTGGTAAAAACATCACGAGGCCTAGCAATGAAGATTCCGATCTTAAATTCAAACCCATTTGCACCAAACTTGCTTACATTCTTGGCCTTAGAGTTTCCGCTTCACACAGGAGAAAAGGTATTGGTCTGAAACTAGTTAACAGAATGGAGGAATGGTTTCGAAGAAATGGTGCAGAGTACTCATACATGGCTACTGAGCTTGACAATAAAGCTTCACTAAATCTTTTCACCCAAAAATGCTACTACACCAAATTTCGTACCCCTTCAATTTTGGTCCAACCAGTCTTTGCTCACCGAGTCAAAACTCACCGCAACCGAGTCACCATTATTGAACTCACCCCACCAGAGGCTGAGACCCTCTACCGCCGCCAATTCTCTGCCACCGAGTTTTTTCCTCAGGACATTGATACAATTGTGGAAAACAAGCTCAATGTAGGTACATTTTTAGCTGTCCCAACCGAGTTTTTGTGGACGGGTTTGGAAAGGTTTCTATCCAAGCCGCCCGAGTCATGGGCTGTTTTGAGTGCATGGAATTCTAAGGAGGTGTTTACATTGGAAATCAAAGGTGCATCGCTTGCACGGCGCTTGGCTGCCAGGGCAACTCGCATGGTGGATAGGGCGCTGCCTTGGCTGAGGATACCTTCGGTCCCCAATATTTTTAGGCCATTTGGGTTGCTTTTCCTGTATGGGTTAGGAGGACAAGGCCCACGCGCAGATAAGCTGGCAAAGGTGCTTTGTGGCCATGCACATAACGTAGCTAGGGAATTGGGCTGTGGGGTGGTGGTGACTGAAGTAGCCAACCAAGACCCGTTGAGGTTAGCAGTACCACATTGGAAGCGGCTATCGTGCGCCGAAGATGTGTGGTGCATCAAGAGGCTTGTTGAGGACTATAGTGATGGGTCACTTGGGGACTGGACCAAATCTCCACCCGGGTTATCAATTTTTGTTGATCCAAGGGAATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

365

Amino Acids

41.29

Weight (kDa)

9.44

Isoelectric Point (pI)

42.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 19 - 122 5.3e-13 Acetyltransferase (GNAT) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 843
AciI CCGC 6 cut(s) 231, 442, 496, 499, 632, 970
AclWI GGATC 2 cut(s) 110, 1076
AcoI YGGCCR 1 cut(s) 871
AcsI RAATTY 4 cut(s) 179, 383, 664, 1091
AcuI CTGAAG 1 cut(s) 942
AfaI GTAC 4 cut(s) 311, 391, 571, 957
AfiI CCNNNNNNNGG 3 cut(s) 70, 478, 642
AgsI TTSAA 3 cut(s) 184, 399, 464
AhlI ACTAGT 1 cut(s) 265
AjnI CCWGG 1 cut(s) 725
AluBI AGCT 6 cut(s) 331, 344, 559, 581, 853, 890
AluI AGCT 6 cut(s) 331, 344, 559, 581, 853, 890
Alw26I GTCTC 1 cut(s) 479
AlwI GGATC 2 cut(s) 110, 1076
AlwNI CAGNNNCTG 1 cut(s) 482
Ama87I CYCGRG 2 cut(s) 635, 1061
AoxI GGCC 5 cut(s) 152, 217, 794, 835, 871
ApeKI GCWGC 2 cut(s) 722, 754
ApoI RAATTY 4 cut(s) 179, 383, 664, 1091
Asp700I GAANNNNTTC 2 cut(s) 288, 618
AspLEI GCGC 4 cut(s) 717, 754, 845, 983
AspS9I GGNCC 4 cut(s) 406, 778, 836, 1047
AsuC2I CCSGG 2 cut(s) 1062, 1063
AsuHPI GGTGA 7 cut(s) 38, 352, 416, 431, 445, 460, 928
AsuII TTCGAA 1 cut(s) 292
AvaI CYCGRG 2 cut(s) 635, 1061
AvaII GGWCC 3 cut(s) 406, 778, 1047
AxyI CCTNAGG 1 cut(s) 528
BaeI ACNNNNGTAYC 2 cut(s) 531, 564
BalI TGGCCA 1 cut(s) 873
BauI CACGAG 1 cut(s) 148
BbvCI CCTCAGC 1 cut(s) 764
BbvI GCAGC 2 cut(s) 709, 741
BccI CCATC 1 cut(s) 1022
BceAI ACGGC 1 cut(s) 728
BcgI CGANNNNNNTGC 2 cut(s) 106, 140
BciT130I CCWGG 1 cut(s) 727
BciVI GTATCC 1 cut(s) 762
BcnI CCSGG 2 cut(s) 1062, 1063
BcoDI GTCTC 1 cut(s) 479
BcuI ACTAGT 1 cut(s) 265
BfaI CTAG 3 cut(s) 156, 266, 891
BfmI CTRYAG 1 cut(s) 1021
BfoI RGCGCY 2 cut(s) 718, 755
BfuI GTATCC 1 cut(s) 762
BisI GCNGC 5 cut(s) 499, 632, 723, 755, 971
BlsI GCNGC 5 cut(s) 500, 633, 724, 756, 972
BmcAI AGTACT 1 cut(s) 311
Bme1390I CCNGG 3 cut(s) 727, 1062, 1063
Bme18I GGWCC 3 cut(s) 406, 778, 1047
BmeT110I CYCGRG 2 cut(s) 635, 1061
BmgT120I GGNCC 4 cut(s) 406, 778, 836, 1047
BmiI GGNNCC 1 cut(s) 780
BmrFI CCNGG 3 cut(s) 727, 1062, 1063
BmsI GCATC 3 cut(s) 126, 710, 1008
Bpu10I CCTNAGC 1 cut(s) 764
Bpu14I TTCGAA 1 cut(s) 292
BpuMI CCSGG 2 cut(s) 1062, 1063
BsaBI GATNNNNATC 1 cut(s) 171
BsaI GGTCTC 1 cut(s) 479
BsaJI CCNNGG 4 cut(s) 726, 758, 1061, 1085
BsaXI ACNNNNNCTCC 6 cut(s) 235, 265, 272, 302, 1039, 1069
Bsc4I CCNNNNNNNGG 3 cut(s) 70, 478, 642
Bse1I ACTGG 2 cut(s) 413, 1049
Bse21I CCTNAGG 1 cut(s) 528
Bse3DI GCAATG 1 cut(s) 166
Bse8I GATNNNNATC 1 cut(s) 171
BseBI CCWGG 1 cut(s) 727
BseDI CCNNGG 4 cut(s) 726, 758, 1061, 1085
BseJI GATNNNNATC 1 cut(s) 171
BseLI CCNNNNNNNGG 3 cut(s) 70, 478, 642
BseMI GCAATG 1 cut(s) 166
BseMII CTCAG 4 cut(s) 318, 474, 542, 755
BseNI ACTGG 2 cut(s) 413, 1049
BseXI GCAGC 2 cut(s) 709, 741
BsgI GTGCAG 1 cut(s) 324
Bsh1236I CGCG 1 cut(s) 843
BshFI GGCC 5 cut(s) 154, 219, 796, 837, 873
BsiHKCI CYCGRG 2 cut(s) 635, 1061
BsiSI CCGG 1 cut(s) 1062
BslFI GGGAC 3 cut(s) 569, 764, 1055
BslI CCNNNNNNNGG 3 cut(s) 70, 478, 642
BsmAI GTCTC 1 cut(s) 479
BsmFI GGGAC 3 cut(s) 569, 764, 1055
BsnI GGCC 5 cut(s) 154, 219, 796, 837, 873
Bso31I GGTCTC 1 cut(s) 479
BsoBI CYCGRG 2 cut(s) 635, 1061
Bsp119I TTCGAA 1 cut(s) 292
Bsp143I GATC 4 cut(s) 16, 102, 172, 1081
BspACI CCGC 6 cut(s) 231, 442, 496, 499, 632, 970
BspANI GGCC 5 cut(s) 154, 219, 796, 837, 873
BspCNI CTCAG 4 cut(s) 319, 475, 541, 756
BspFNI CGCG 1 cut(s) 843
BspLI GGNNCC 1 cut(s) 780
BspPI GGATC 2 cut(s) 110, 1076
BspT104I TTCGAA 1 cut(s) 292
BspTNI GGTCTC 1 cut(s) 479
BsrDI GCAATG 1 cut(s) 166
BsrI ACTGG 2 cut(s) 413, 1049
BssECI CCNNGG 4 cut(s) 726, 758, 1061, 1085
BssMI GATC 4 cut(s) 16, 102, 172, 1081
BssSI CACGAG 1 cut(s) 148
BssT1I CCWWGG 2 cut(s) 758, 1085
Bst2BI CACGAG 1 cut(s) 148
Bst2UI CCWGG 1 cut(s) 727
BstAPI GCANNNNNTGC 1 cut(s) 707
BstBI TTCGAA 1 cut(s) 292
BstC8I GCNNGC 2 cut(s) 708, 855
BstDEI CTNAG 6 cut(s) 221, 327, 483, 528, 669, 764
BstEII GGTNACC 1 cut(s) 26
BstFNI CGCG 1 cut(s) 843
BstH2I RGCGCY 2 cut(s) 718, 755
BstHHI GCGC 4 cut(s) 717, 754, 845, 983
BstKTI GATC 4 cut(s) 19, 105, 175, 1084
BstMAI GTCTC 1 cut(s) 479
BstMBI GATC 4 cut(s) 16, 102, 172, 1081
BstMWI GCNNNNNNNGC 4 cut(s) 707, 712, 728, 760
BstNI CCWGG 1 cut(s) 727
BstPI GGTNACC 1 cut(s) 26
BstSCI CCNGG 3 cut(s) 725, 1060, 1061
BstSFI CTRYAG 1 cut(s) 1021
BstUI CGCG 1 cut(s) 843
BstV1I GCAGC 2 cut(s) 709, 741
Bsu36I CCTNAGG 1 cut(s) 528
BsuI GTATCC 1 cut(s) 762
BsuRI GGCC 5 cut(s) 154, 219, 796, 837, 873
BtgZI GCGATG 1 cut(s) 687
Cac8I GCNNGC 2 cut(s) 708, 855
CaiI CAGNNNCTG 1 cut(s) 482
CfoI GCGC 4 cut(s) 717, 754, 845, 983
Cfr13I GGNCC 4 cut(s) 406, 778, 836, 1047
Cfr9I CCCGGG 1 cut(s) 1061
Csp6I GTAC 4 cut(s) 310, 390, 570, 956
CviAII CATG 6 cut(s) 67, 319, 642, 660, 739, 875
CviQI GTAC 4 cut(s) 310, 390, 570, 956
DdeI CTNAG 6 cut(s) 221, 327, 483, 528, 669, 764
DpnI GATC 4 cut(s) 18, 104, 174, 1083
DpnII GATC 4 cut(s) 16, 102, 172, 1081
EaeI YGGCCR 1 cut(s) 871
Eco130I CCWWGG 2 cut(s) 758, 1085
Eco147I AGGCCT 1 cut(s) 154
Eco31I GGTCTC 1 cut(s) 479
Eco47I GGWCC 3 cut(s) 406, 778, 1047
Eco57I CTGAAG 1 cut(s) 942
Eco81I CCTNAGG 1 cut(s) 528
Eco88I CYCGRG 2 cut(s) 635, 1061
Eco91I GGTNACC 1 cut(s) 26
EcoO65I GGTNACC 1 cut(s) 26
EcoRI GAATTC 1 cut(s) 664
EcoRII CCWGG 1 cut(s) 725
EcoT14I CCWWGG 2 cut(s) 758, 1085
ErhI CCWWGG 2 cut(s) 758, 1085
FaeI CATG 6 cut(s) 70, 322, 645, 663, 742, 878
FaqI GGGAC 3 cut(s) 569, 764, 1055
FatI CATG 6 cut(s) 66, 318, 641, 659, 738, 874
Fnu4HI GCNGC 5 cut(s) 499, 632, 723, 755, 971
Fsp4HI GCNGC 5 cut(s) 499, 632, 723, 755, 971
FspBI CTAG 3 cut(s) 156, 266, 891
GlaI GCGC 4 cut(s) 716, 753, 844, 982
GluI GCNGC 5 cut(s) 499, 632, 723, 755, 971
HaeII RGCGCY 2 cut(s) 718, 755
HaeIII GGCC 5 cut(s) 154, 219, 796, 837, 873
HapII CCGG 1 cut(s) 1062
HhaI GCGC 4 cut(s) 717, 754, 845, 983
Hin1II CATG 6 cut(s) 70, 322, 645, 663, 742, 878
Hin6I GCGC 4 cut(s) 715, 752, 843, 981
HinP1I GCGC 4 cut(s) 715, 752, 843, 981
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HindIII AAGCTT 1 cut(s) 342
HinfI GANTC 5 cut(s) 42, 167, 429, 450, 638
HpaI GTTAAC 1 cut(s) 271
HpaII CCGG 1 cut(s) 1062
HphI GGTGA 7 cut(s) 38, 352, 416, 431, 445, 460, 928
Hpy166II GTNNAC 3 cut(s) 271, 603, 681
Hpy188I TCNGA 3 cut(s) 47, 172, 261
Hpy188III TCNNGA 3 cut(s) 148, 530, 1003
Hpy8I GTNNAC 3 cut(s) 271, 603, 681
HpyAV CCTTC 2 cut(s) 405, 783
HpyCH4IV ACGT 1 cut(s) 885
HpyCH4V TGCA 8 cut(s) 117, 195, 305, 659, 701, 710, 878, 999
HpyF10VI GCNNNNNNNGC 4 cut(s) 707, 712, 728, 760
HpyF3I CTNAG 6 cut(s) 221, 327, 483, 528, 669, 764
HpySE526I ACGT 1 cut(s) 885
Hsp92II CATG 6 cut(s) 70, 322, 645, 663, 742, 878
HspAI GCGC 4 cut(s) 715, 752, 843, 981
KspAI GTTAAC 1 cut(s) 271
Kzo9I GATC 4 cut(s) 16, 102, 172, 1081
Lsp1109I GCAGC 2 cut(s) 709, 741
LweI GCATC 3 cut(s) 126, 710, 1008
MaeI CTAG 3 cut(s) 156, 266, 891
MaeII ACGT 1 cut(s) 885
MaeIII GTNAC 5 cut(s) 3, 26, 451, 916, 1032
MalI GATC 4 cut(s) 18, 104, 174, 1083
MboI GATC 4 cut(s) 16, 102, 172, 1081
MboII GAAGA 3 cut(s) 176, 306, 998
MfeI CAATTG 1 cut(s) 543
MlsI TGGCCA 1 cut(s) 873
MluCI AATT 9 cut(s) 179, 383, 399, 503, 543, 664, 896, 1071, 1091
MluNI TGGCCA 1 cut(s) 873
MlyI GAGTC 3 cut(s) 438, 459, 647
MmeI TCCRAC 1 cut(s) 433
Mox20I TGGCCA 1 cut(s) 873
MroXI GAANNNNTTC 2 cut(s) 288, 618
MscI TGGCCA 1 cut(s) 873
MseI TTAA 2 cut(s) 177, 270
MslI CAYNNNNRTG 1 cut(s) 71
Msp20I TGGCCA 1 cut(s) 873
MspI CCGG 1 cut(s) 1062
MspR9I CCNGG 3 cut(s) 727, 1062, 1063
MunI CAATTG 1 cut(s) 543
MvaI CCWGG 1 cut(s) 727
MvnI CGCG 1 cut(s) 843
MwoI GCNNNNNNNGC 4 cut(s) 707, 712, 728, 760
NciI CCSGG 2 cut(s) 1062, 1063
NdeII GATC 4 cut(s) 16, 102, 172, 1081
NlaIII CATG 6 cut(s) 70, 322, 645, 663, 742, 878
NlaIV GGNNCC 1 cut(s) 780
NmuCI GTSAC 5 cut(s) 3, 26, 451, 916, 1032
NspV TTCGAA 1 cut(s) 292
PceI AGGCCT 1 cut(s) 154
PdmI GAANNNNTTC 2 cut(s) 288, 618
PfeI GAWTC 2 cut(s) 42, 167
PkrI GCNGC 5 cut(s) 500, 633, 724, 756, 972
PleI GAGTC 3 cut(s) 437, 458, 646
PpsI GAGTC 3 cut(s) 437, 458, 646
Psp6I CCWGG 1 cut(s) 725
PspEI GGTNACC 1 cut(s) 26
PspGI CCWGG 1 cut(s) 725
PspN4I GGNNCC 1 cut(s) 780
PspPI GGNCC 4 cut(s) 406, 778, 836, 1047
PstNI CAGNNNCTG 1 cut(s) 482
RsaI GTAC 4 cut(s) 311, 391, 571, 957
RsaNI GTAC 4 cut(s) 310, 390, 570, 956
RseI CAYNNNNRTG 1 cut(s) 71
SaqAI TTAA 2 cut(s) 177, 270
SatI GCNGC 5 cut(s) 499, 632, 723, 755, 971
Sau3AI GATC 4 cut(s) 16, 102, 172, 1081
Sau96I GGNCC 4 cut(s) 406, 778, 836, 1047
ScaI AGTACT 1 cut(s) 311
SchI GAGTC 3 cut(s) 438, 459, 647
ScrFI CCNGG 3 cut(s) 727, 1062, 1063
SfaNI GCATC 3 cut(s) 126, 710, 1008
SfcI CTRYAG 1 cut(s) 1021
SfuI TTCGAA 1 cut(s) 292
SinI GGWCC 3 cut(s) 406, 778, 1047
SmaI CCCGGG 1 cut(s) 1063
SmiMI CAYNNNNRTG 1 cut(s) 71
SpeI ACTAGT 1 cut(s) 265
Sse9I AATT 9 cut(s) 179, 383, 399, 503, 543, 664, 896, 1071, 1091
SseBI AGGCCT 1 cut(s) 154
SsiI CCGC 6 cut(s) 231, 442, 496, 499, 632, 970
SspI AATATT 1 cut(s) 787
SspMI CTAG 3 cut(s) 156, 266, 891
StuI AGGCCT 1 cut(s) 154
StyD4I CCNGG 3 cut(s) 725, 1060, 1061
StyI CCWWGG 2 cut(s) 758, 1085
TaiI ACGT 1 cut(s) 888
TaqI TCGA 1 cut(s) 292
TaqII GACCGA 1 cut(s) 766
TasI AATT 9 cut(s) 179, 383, 399, 503, 543, 664, 896, 1071, 1091
TatI WGTACW 1 cut(s) 309
TauI GCSGC 3 cut(s) 501, 634, 973
TfiI GAWTC 2 cut(s) 42, 167
Tru1I TTAA 2 cut(s) 177, 270
Tru9I TTAA 2 cut(s) 177, 270
TseFI GTSAC 5 cut(s) 3, 26, 451, 916, 1032
TseI GCWGC 2 cut(s) 722, 754
Tsp45I GTSAC 5 cut(s) 3, 26, 451, 916, 1032
TspDTI ATGAA 1 cut(s) 177
TspMI CCCGGG 1 cut(s) 1061
VpaK11BI GGWCC 3 cut(s) 406, 778, 1047
XapI RAATTY 4 cut(s) 179, 383, 664, 1091
XmaI CCCGGG 1 cut(s) 1061
XmnI GAANNNNTTC 2 cut(s) 288, 618
XspI CTAG 3 cut(s) 156, 266, 891
ZrmI AGTACT 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.