Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000079.1

Orthogroup ID

OG0004042

Physical Location & Seq

Genomic Coordinates Reverse (-)

53057 .. 53950

Gene Structure 894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000079.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atgatcaggaattctattacctcgaacgcacgtttcacttggttttggattccaaggaaagcgaacattgcagctgatttggttgcctcgctagtagtgaggaagaagtgcccggaggtctggattgaccggctgccttcttccctcgtgcatgtcctttctcgcgacggtcttccttgcccaccttttcaaaatatcaaaggggacaccgctgactatccgaggtcgtgggtgttggtgttttcatcggagcggccatttgggttgcttttcctgtatgggttaggaggacaaggcccacgcgctgataagctggcaaaggtgctttgtgaccatgcacataacgtagccagggaattgggctgtggggtggtggtgactgaagtagccaaccaagaaccgttgaggttagcagtaccacattggaagcagctatcgtgcgccgaggatgtatggtgcatcaagaggcttgttgaggactatagtgatgggtcacttggggactggaccaaatctgcacccgggtcatcaatttttgttgatccaagggaattctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

185

Amino Acids

20.68

Weight (kDa)

8.23

Isoelectric Point (pI)

37.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23060 AT2G23060 AT4G37580 AT4G37580 AT5G67430 AT5G67430
fragaria_vesca	FvH4_1g17420 FvH4_2g04100
malus_domestica	MD02G1183200.v1.1 MD15G1295100.v1.1
prunus_persica	Prupe.6G222600_v2.0.a1 Prupe.8G142200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0107611 RchiOBHm_Chr6g0253471
rosa_laevigata	RLG00000015017 RLG00000017595
rosa_multiflora	Rmu_co8105006.1_g000001 Rmu_sc0000800.1_g000038 Rmu_sc0042258.1_g000001 Rmu_ssc0000079.1_g000009
rosa_roxburghii	Rroxscaffold_2G00136150 Rroxscaffold_7G00211870
rosa_rugosa	Rorug02G0146000 Rorug05G0544500
rosa_samantha	Rh2AG195300 Rh2BG207900 Rh2CG200500 Rh2DG203000 Rh6AG059500 Rh6BG053500 Rh6CG050600 Rh6DG047300
rosa_wichuraiana	Rw2G015480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	253
AccII	CGCG	2 cut(s)	165, 303
AciI	CCGC	2 cut(s)	210, 253
AclWI	GGATC	1 cut(s)	536
AcoI	YGGCCR	1 cut(s)	254
AcsI	RAATTY	2 cut(s)	10, 551
AcuI	CTGAAG	1 cut(s)	402
AfaI	GTAC	1 cut(s)	417
AgsI	TTSAA	1 cut(s)	191
AjnI	CCWGG	1 cut(s)	350
AluBI	AGCT	3 cut(s)	74, 313, 433
AluI	AGCT	3 cut(s)	74, 313, 433
AlwI	GGATC	1 cut(s)	536
Ama87I	CYCGRG	1 cut(s)	521
AoxI	GGCC	2 cut(s)	254, 295
ApeKI	GCWGC	3 cut(s)	71, 133, 430
ApoI	RAATTY	2 cut(s)	10, 551
AspLEI	GCGC	2 cut(s)	305, 443
AspS9I	GGNCC	2 cut(s)	296, 507
AsuC2I	CCSGG	3 cut(s)	113, 522, 523
AsuHPI	GGTGA	1 cut(s)	388
AvaI	CYCGRG	1 cut(s)	521
AvaII	GGWCC	1 cut(s)	507
BaeGI	GKGCMC	1 cut(s)	113
BauI	CACGAG	1 cut(s)	146
BbsI	GAAGAC	1 cut(s)	164
BbvI	GCAGC	3 cut(s)	83, 120, 442
BccI	CCATC	1 cut(s)	482
BciT130I	CCWGG	1 cut(s)	352
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	3 cut(s)	113, 522, 523
BfaI	CTAG	2 cut(s)	92, 556
BfmI	CTRYAG	1 cut(s)	481
BisI	GCNGC	4 cut(s)	72, 134, 254, 431
BlsI	GCNGC	4 cut(s)	73, 135, 255, 432
Bme1390I	CCNGG	4 cut(s)	113, 352, 522, 523
Bme18I	GGWCC	1 cut(s)	507
BmeT110I	CYCGRG	1 cut(s)	521
BmgT120I	GGNCC	2 cut(s)	296, 507
BmrFI	CCNGG	4 cut(s)	113, 352, 522, 523
BmsI	GCATC	1 cut(s)	468
BpiI	GAAGAC	1 cut(s)	164
BpuMI	CCSGG	3 cut(s)	113, 522, 523
BsaJI	CCNNGG	6 cut(s)	53, 221, 351, 444, 521, 545
Bse118I	RCCGGY	1 cut(s)	129
Bse1I	ACTGG	1 cut(s)	509
Bse3DI	GCAATG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	352
BseDI	CCNNGG	6 cut(s)	53, 221, 351, 444, 521, 545
BseGI	GGATG	1 cut(s)	454
BseMI	GCAATG	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	509
BseSI	GKGCMC	1 cut(s)	113
BseXI	GCAGC	3 cut(s)	83, 120, 442
BsgI	GTGCAG	1 cut(s)	501
Bsh1236I	CGCG	2 cut(s)	165, 303
BshFI	GGCC	2 cut(s)	256, 297
BsiHKCI	CYCGRG	1 cut(s)	521
BsiSI	CCGG	3 cut(s)	113, 130, 522
BslFI	GGGAC	2 cut(s)	218, 515
BsmFI	GGGAC	2 cut(s)	218, 515
BsnI	GGCC	2 cut(s)	256, 297
BsoBI	CYCGRG	1 cut(s)	521
Bsp1286I	GDGCHC	1 cut(s)	113
Bsp143I	GATC	2 cut(s)	3, 541
Bsp68I	TCGCGA	1 cut(s)	165
BspACI	CCGC	2 cut(s)	210, 253
BspANI	GGCC	2 cut(s)	256, 297
BspFNI	CGCG	2 cut(s)	165, 303
BspPI	GGATC	1 cut(s)	536
BsrBI	CCGCTC	1 cut(s)	253
BsrDI	GCAATG	1 cut(s)	66
BsrFI	RCCGGY	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	509
BssAI	RCCGGY	1 cut(s)	129
BssECI	CCNNGG	6 cut(s)	53, 221, 351, 444, 521, 545
BssMI	GATC	2 cut(s)	3, 541
BssSI	CACGAG	1 cut(s)	146
BssT1I	CCWWGG	2 cut(s)	53, 545
Bst2BI	CACGAG	1 cut(s)	146
Bst2UI	CCWGG	1 cut(s)	352
Bst4CI	ACNGT	2 cut(s)	170, 402
BstC8I	GCNNGC	1 cut(s)	315
BstF5I	GGATG	1 cut(s)	454
BstFNI	CGCG	2 cut(s)	165, 303
BstHHI	GCGC	2 cut(s)	305, 443
BstKTI	GATC	2 cut(s)	6, 544
BstMBI	GATC	2 cut(s)	3, 541
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNI	CCWGG	1 cut(s)	352
BstNSI	RCATGY	1 cut(s)	155
BstSCI	CCNGG	4 cut(s)	111, 350, 520, 521
BstSFI	CTRYAG	1 cut(s)	481
BstSLI	GKGCMC	1 cut(s)	113
BstUI	CGCG	2 cut(s)	165, 303
BstV1I	GCAGC	3 cut(s)	83, 120, 442
BstV2I	GAAGAC	1 cut(s)	164
BstXI	CCANNNNNNTGG	1 cut(s)	358
BsuRI	GGCC	2 cut(s)	256, 297
BtsCI	GGATG	1 cut(s)	454
BtuMI	TCGCGA	1 cut(s)	165
Cac8I	GCNNGC	1 cut(s)	315
CfoI	GCGC	2 cut(s)	305, 443
Cfr10I	RCCGGY	1 cut(s)	129
Cfr13I	GGNCC	2 cut(s)	296, 507
Cfr9I	CCCGGG	1 cut(s)	521
Csp6I	GTAC	1 cut(s)	416
CviAII	CATG	2 cut(s)	152, 335
CviQI	GTAC	1 cut(s)	416
DpnI	GATC	2 cut(s)	5, 543
DpnII	GATC	2 cut(s)	3, 541
EaeI	YGGCCR	1 cut(s)	254
Eco130I	CCWWGG	2 cut(s)	53, 545
Eco47I	GGWCC	1 cut(s)	507
Eco57I	CTGAAG	1 cut(s)	402
Eco88I	CYCGRG	1 cut(s)	521
EcoRI	GAATTC	2 cut(s)	10, 551
EcoRII	CCWGG	1 cut(s)	350
EcoT14I	CCWWGG	2 cut(s)	53, 545
ErhI	CCWWGG	2 cut(s)	53, 545
FaeI	CATG	2 cut(s)	155, 338
FaiI	YATR	6 cut(s)	153, 279, 336, 342, 454, 483
FaqI	GGGAC	2 cut(s)	218, 515
FatI	CATG	2 cut(s)	151, 334
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	4 cut(s)	72, 134, 254, 431
FokI	GGATG	1 cut(s)	461
Fsp4HI	GCNGC	4 cut(s)	72, 134, 254, 431
FspBI	CTAG	2 cut(s)	92, 556
GlaI	GCGC	2 cut(s)	304, 442
GluI	GCNGC	4 cut(s)	72, 134, 254, 431
HaeIII	GGCC	2 cut(s)	256, 297
HapII	CCGG	3 cut(s)	113, 130, 522
HhaI	GCGC	2 cut(s)	305, 443
Hin1II	CATG	2 cut(s)	155, 338
Hin6I	GCGC	2 cut(s)	303, 441
HinP1I	GCGC	2 cut(s)	303, 441
HinfI	GANTC	1 cut(s)	49
HpaII	CCGG	3 cut(s)	113, 130, 522
HphI	GGTGA	1 cut(s)	388
Hpy188I	TCNGA	2 cut(s)	222, 250
Hpy188III	TCNNGA	4 cut(s)	7, 121, 164, 463
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	1 cut(s)	147
HpyCH4III	ACNGT	2 cut(s)	170, 402
HpyCH4IV	ACGT	2 cut(s)	31, 345
HpyCH4V	TGCA	5 cut(s)	71, 151, 338, 459, 518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpySE526I	ACGT	2 cut(s)	31, 345
Hsp92II	CATG	2 cut(s)	155, 338
HspAI	GCGC	2 cut(s)	303, 441
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 541
LmnI	GCTCC	1 cut(s)	250
LpnPI	CCDG	9 cut(s)	106, 126, 143, 287, 299, 337, 364, 490, 535
Lsp1109I	GCAGC	3 cut(s)	83, 120, 442
LweI	GCATC	1 cut(s)	468
MaeI	CTAG	2 cut(s)	92, 556
MaeII	ACGT	2 cut(s)	31, 345
MaeIII	GTNAC	3 cut(s)	329, 376, 492
MalI	GATC	2 cut(s)	5, 543
MbiI	CCGCTC	1 cut(s)	253
MboI	GATC	2 cut(s)	3, 541
MboII	GAAGA	3 cut(s)	115, 132, 164
MhlI	GDGCHC	1 cut(s)	113
MluCI	AATT	4 cut(s)	10, 356, 531, 551
MspA1I	CMGCKG	2 cut(s)	74, 212
MspI	CCGG	3 cut(s)	113, 130, 522
MspR9I	CCNGG	4 cut(s)	113, 352, 522, 523
MvaI	CCWGG	1 cut(s)	352
MvnI	CGCG	2 cut(s)	165, 303
MwoI	GCNNNNNNNGC	1 cut(s)	68
NciI	CCSGG	3 cut(s)	113, 522, 523
NdeII	GATC	2 cut(s)	3, 541
NlaIII	CATG	2 cut(s)	155, 338
NmeAIII	GCCGAG	1 cut(s)	469
NmuCI	GTSAC	3 cut(s)	329, 376, 492
NruI	TCGCGA	1 cut(s)	165
NspI	RCATGY	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	49
PkrI	GCNGC	4 cut(s)	73, 135, 255, 432
Psp6I	CCWGG	1 cut(s)	350
PspGI	CCWGG	1 cut(s)	350
PspPI	GGNCC	2 cut(s)	296, 507
PvuII	CAGCTG	1 cut(s)	74
RruI	TCGCGA	1 cut(s)	165
RsaI	GTAC	1 cut(s)	417
RsaNI	GTAC	1 cut(s)	416
SatI	GCNGC	4 cut(s)	72, 134, 254, 431
Sau3AI	GATC	2 cut(s)	3, 541
Sau96I	GGNCC	2 cut(s)	296, 507
ScrFI	CCNGG	4 cut(s)	113, 352, 522, 523
SduI	GDGCHC	1 cut(s)	113
SfaNI	GCATC	1 cut(s)	468
SfcI	CTRYAG	1 cut(s)	481
SinI	GGWCC	1 cut(s)	507
SmaI	CCCGGG	1 cut(s)	523
Sse9I	AATT	4 cut(s)	10, 356, 531, 551
SsiI	CCGC	2 cut(s)	210, 253
SspMI	CTAG	2 cut(s)	92, 556
StyD4I	CCNGG	4 cut(s)	111, 350, 520, 521
StyI	CCWWGG	2 cut(s)	53, 545
TaaI	ACNGT	2 cut(s)	170, 402
TaiI	ACGT	2 cut(s)	34, 348
TaqI	TCGA	1 cut(s)	23
TasI	AATT	4 cut(s)	10, 356, 531, 551
TauI	GCSGC	1 cut(s)	256
TfiI	GAWTC	1 cut(s)	49
TseFI	GTSAC	3 cut(s)	329, 376, 492
TseI	GCWGC	3 cut(s)	71, 133, 430
Tsp45I	GTSAC	3 cut(s)	329, 376, 492
TspDTI	ATGAA	1 cut(s)	234
TspMI	CCCGGG	1 cut(s)	521
VpaK11BI	GGWCC	1 cut(s)	507
XapI	RAATTY	2 cut(s)	10, 551
XceI	RCATGY	1 cut(s)	155
XmaI	CCCGGG	1 cut(s)	521
XspI	CTAG	2 cut(s)	92, 556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.