RLG00000015017

N-acetyltransferase HLS1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0004042
Physical Location & Seq
Reverse (-)
60674222 .. 60675774
1553 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015017

Sequence Viewer

Length: 1212 bp
ATGGAAGAGGAAATGAGAGCCAATATGTTAGTGATTAGAGAGCTGGACTTGAACAAGGACACACCAAGAGTTGAAGAGCTAGAAAGAGGGTGTGAGGCTGGCTCAAGTGGCGAAATGTCACTCTTTACTGATCTTTTGGGTGACCCGATTTGCCGAATCCGAAACTCGCCTTCGTTCCTCATGCTGGTGGCTGAAATGGGAAAAGAAATCGTTGGGATCATCAGGGGTTGCATCAAAGTCGTTTCTTGTGGTAAAAACATCACGAGGCCTAGCAATGAAGACTCCGATCTTAAATTCAAACCCATTTGCACCAAACTTGCTTACATTCTTGGCCTTAGAGTTTCTGCTTCACACAGGAGAAAAGGTATTGGTTTGAAACTAGTTAACAGAATGGAGGAATGGTTTCGAAGAAATGGTGCAGAGTACTCATACATGGCTACTGAGCTTGACAACAAAGCTTCACTAAACCTTTTCACCCAAAAATGCTACTACACCAAATTCCGTACCCCTTCAATTTTGGTCCAACCGGTCTTTGCTCACCGAGTCAAAACTCACCGCAACCAAGTCACCATTATTGAACTCACCCCACCAGAGGCTGAGACCCTCTACCGCCACCAATTCTCCACCACCGAGTTTTTTCCTCAGGACATTGATAGAATTGTGGAAAACAAGCTCAATGTTGGTACATTTTTAGCTGTCCCAGCCGAGTTTTTGTGGACGGGTTTGGACAGGTTTCTATCCAAGCCGCCCAAGTCATGGGCTGTTTTGAGTGCATGGAATTGTAAGGAGGTGTTTACATTGGAAATGAAAGGTGCATCGCTTGCACGGCGCTTGGCTGCCAAGGCAACTCGCATGGTGGATAGGGCGTTGCCTTGGCTGAGGATACCCTCGGTCCCCAATTTTTTTAGGCCATTTGGGTTGCTTTTCCTGTATGGCTTAGGAGGACAAGGCCCACGCGCGGATAAACTGGCAAAGGTGCTTTGTGGCCATGCACATAACATAGCCAGAGAATTGGGCTGTGGGGTGGTGGTGACTGAAGTAGCCAGCCAAGAACCGTTGAGGTTAGCAGTACCACATTGGAAGCGGCTATCGTGCGCCGAGGATGTGTGGTGCATCAAGAGGCTTGTTGAGGACTATAGTGAAGGGTCACTTGGGGACTGGACCAAATCTCCAACCGGGTTATCAATTTTCGTTGATCCGAGGGAATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

404

Amino Acids

45.66

Weight (kDa)

8.97

Isoelectric Point (pI)

38.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 54 - 160 3.6e-13 Acetyltransferase (GNAT) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 756
AccII CGCG 2 cut(s) 957, 959
AciI CCGC 5 cut(s) 556, 610, 746, 959, 1084
AclWI GGATC 2 cut(s) 224, 1190
AcoI YGGCCR 1 cut(s) 985
AcsI RAATTY 3 cut(s) 293, 497, 1205
AcuI CTGAAG 1 cut(s) 1056
AfaI GTAC 4 cut(s) 425, 505, 685, 1071
AfiI CCNNNNNNNGG 4 cut(s) 184, 592, 756, 958
AgeI ACCGGT 1 cut(s) 526
AgsI TTSAA 6 cut(s) 52, 74, 298, 376, 513, 578
AhlI ACTAGT 1 cut(s) 379
AjuI GAANNNNNNNTTGG 2 cut(s) 1134, 1166
AluBI AGCT 6 cut(s) 43, 79, 445, 458, 673, 695
AluI AGCT 6 cut(s) 43, 79, 445, 458, 673, 695
Alw26I GTCTC 1 cut(s) 593
AlwI GGATC 2 cut(s) 224, 1190
AlwNI CAGNNNCTG 1 cut(s) 596
AoxI GGCC 5 cut(s) 266, 331, 908, 949, 985
ApeKI GCWGC 1 cut(s) 836
ApoI RAATTY 3 cut(s) 293, 497, 1205
AsiGI ACCGGT 1 cut(s) 526
Asp700I GAANNNNTTC 1 cut(s) 402
AspLEI GCGC 3 cut(s) 831, 959, 1097
AspS9I GGNCC 4 cut(s) 520, 892, 950, 1161
AsuC2I CCSGG 1 cut(s) 1177
AsuHPI GGTGA 7 cut(s) 152, 466, 530, 545, 559, 574, 1042
AsuII TTCGAA 1 cut(s) 406
AvaII GGWCC 3 cut(s) 520, 892, 1161
AxyI CCTNAGG 1 cut(s) 642
BalI TGGCCA 1 cut(s) 987
BauI CACGAG 1 cut(s) 262
BbsI GAAGAC 1 cut(s) 285
BbvCI CCTCAGC 1 cut(s) 878
BbvI GCAGC 1 cut(s) 823
BceAI ACGGC 1 cut(s) 842
BcgI CGANNNNNNTGC 2 cut(s) 220, 254
BciVI GTATCC 1 cut(s) 876
BcnI CCSGG 1 cut(s) 1177
BcoDI GTCTC 1 cut(s) 593
BcuI ACTAGT 1 cut(s) 379
BfaI CTAG 4 cut(s) 80, 270, 380, 1210
BfmI CTRYAG 1 cut(s) 1135
BfoI RGCGCY 1 cut(s) 832
BfuI GTATCC 1 cut(s) 876
BisI GCNGC 3 cut(s) 746, 837, 1085
BlsI GCNGC 3 cut(s) 747, 838, 1086
BmcAI AGTACT 1 cut(s) 425
Bme1390I CCNGG 1 cut(s) 1177
Bme18I GGWCC 3 cut(s) 520, 892, 1161
BmgT120I GGNCC 4 cut(s) 520, 892, 950, 1161
BmiI GGNNCC 1 cut(s) 894
BmrFI CCNGG 1 cut(s) 1177
BmsI GCATC 3 cut(s) 240, 824, 1122
BpiI GAAGAC 1 cut(s) 285
BplI GAGNNNNNCTC 2 cut(s) 86, 118
Bpu10I CCTNAGC 2 cut(s) 878, 937
Bpu14I TTCGAA 1 cut(s) 406
BpuEI CTTGAG 1 cut(s) 88
BpuMI CCSGG 1 cut(s) 1177
BsaI GGTCTC 1 cut(s) 593
BsaJI CCNNGG 5 cut(s) 840, 872, 888, 1098, 1199
BsaWI WCCGGW 1 cut(s) 526
BsaXI ACNNNNNCTCC 8 cut(s) 349, 379, 386, 416, 605, 635, 1153, 1183
Bsc4I CCNNNNNNNGG 4 cut(s) 184, 592, 756, 958
Bse118I RCCGGY 1 cut(s) 526
Bse1I ACTGG 2 cut(s) 972, 1163
Bse21I CCTNAGG 1 cut(s) 642
Bse3DI GCAATG 1 cut(s) 280
BseDI CCNNGG 5 cut(s) 840, 872, 888, 1098, 1199
BseGI GGATG 1 cut(s) 1108
BseLI CCNNNNNNNGG 4 cut(s) 184, 592, 756, 958
BseMI GCAATG 1 cut(s) 280
BseMII CTCAG 4 cut(s) 432, 588, 656, 869
BseNI ACTGG 2 cut(s) 972, 1163
BseXI GCAGC 1 cut(s) 823
BseYI CCCAGC 1 cut(s) 700
BsgI GTGCAG 1 cut(s) 438
Bsh1236I CGCG 2 cut(s) 957, 959
BshFI GGCC 5 cut(s) 268, 333, 910, 951, 987
BshTI ACCGGT 1 cut(s) 526
BsiSI CCGG 2 cut(s) 527, 1176
BslFI GGGAC 3 cut(s) 683, 878, 1169
BslI CCNNNNNNNGG 4 cut(s) 184, 592, 756, 958
BsmAI GTCTC 1 cut(s) 593
BsmFI GGGAC 3 cut(s) 683, 878, 1169
BsnI GGCC 5 cut(s) 268, 333, 910, 951, 987
Bso31I GGTCTC 1 cut(s) 593
Bsp119I TTCGAA 1 cut(s) 406
Bsp143I GATC 4 cut(s) 130, 216, 286, 1195
BspACI CCGC 5 cut(s) 556, 610, 746, 959, 1084
BspANI GGCC 5 cut(s) 268, 333, 910, 951, 987
BspCNI CTCAG 4 cut(s) 433, 589, 655, 870
BspFNI CGCG 2 cut(s) 957, 959
BspLI GGNNCC 1 cut(s) 894
BspPI GGATC 2 cut(s) 224, 1190
BspQI GCTCTTC 1 cut(s) 69
BspT104I TTCGAA 1 cut(s) 406
BspTNI GGTCTC 1 cut(s) 593
BsrDI GCAATG 1 cut(s) 280
BsrFI RCCGGY 1 cut(s) 526
BsrI ACTGG 2 cut(s) 972, 1163
BssAI RCCGGY 1 cut(s) 526
BssECI CCNNGG 5 cut(s) 840, 872, 888, 1098, 1199
BssMI GATC 4 cut(s) 130, 216, 286, 1195
BssSI CACGAG 1 cut(s) 262
BssT1I CCWWGG 2 cut(s) 840, 872
Bst2BI CACGAG 1 cut(s) 262
Bst4CI ACNGT 1 cut(s) 1056
Bst6I CTCTTC 1 cut(s) 69
BstAPI GCANNNNNTGC 1 cut(s) 821
BstBI TTCGAA 1 cut(s) 406
BstC8I GCNNGC 3 cut(s) 100, 822, 1045
BstDEI CTNAG 6 cut(s) 335, 441, 597, 642, 878, 937
BstEII GGTNACC 1 cut(s) 140
BstF5I GGATG 1 cut(s) 1108
BstFNI CGCG 2 cut(s) 957, 959
BstH2I RGCGCY 1 cut(s) 832
BstHHI GCGC 3 cut(s) 831, 959, 1097
BstKTI GATC 4 cut(s) 133, 219, 289, 1198
BstMAI GTCTC 1 cut(s) 593
BstMBI GATC 4 cut(s) 130, 216, 286, 1195
BstMWI GCNNNNNNNGC 5 cut(s) 108, 701, 821, 826, 842
BstPI GGTNACC 1 cut(s) 140
BstSCI CCNGG 1 cut(s) 1175
BstSFI CTRYAG 1 cut(s) 1135
BstUI CGCG 2 cut(s) 957, 959
BstV1I GCAGC 1 cut(s) 823
BstV2I GAAGAC 1 cut(s) 285
BstXI CCANNNNNNTGG 1 cut(s) 1012
Bsu36I CCTNAGG 1 cut(s) 642
BsuI GTATCC 1 cut(s) 876
BsuRI GGCC 5 cut(s) 268, 333, 910, 951, 987
BtgZI GCGATG 1 cut(s) 801
BtsCI GGATG 1 cut(s) 1108
Cac8I GCNNGC 3 cut(s) 100, 822, 1045
CaiI CAGNNNCTG 1 cut(s) 596
CfoI GCGC 3 cut(s) 831, 959, 1097
Cfr10I RCCGGY 1 cut(s) 526
Cfr13I GGNCC 4 cut(s) 520, 892, 950, 1161
Csp6I GTAC 4 cut(s) 424, 504, 684, 1070
CspAI ACCGGT 1 cut(s) 526
CviAII CATG 6 cut(s) 181, 433, 756, 774, 853, 989
CviQI GTAC 4 cut(s) 424, 504, 684, 1070
DdeI CTNAG 6 cut(s) 335, 441, 597, 642, 878, 937
DpnI GATC 4 cut(s) 132, 218, 288, 1197
DpnII GATC 4 cut(s) 130, 216, 286, 1195
EaeI YGGCCR 1 cut(s) 985
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Eco130I CCWWGG 2 cut(s) 840, 872
Eco147I AGGCCT 1 cut(s) 268
Eco31I GGTCTC 1 cut(s) 593
Eco47I GGWCC 3 cut(s) 520, 892, 1161
Eco57I CTGAAG 1 cut(s) 1056
Eco81I CCTNAGG 1 cut(s) 642
Eco91I GGTNACC 1 cut(s) 140
EcoO65I GGTNACC 1 cut(s) 140
EcoRI GAATTC 1 cut(s) 1205
EcoT14I CCWWGG 2 cut(s) 840, 872
ErhI CCWWGG 2 cut(s) 840, 872
FaeI CATG 6 cut(s) 184, 436, 759, 777, 856, 992
FalI AAGNNNNNCTT 2 cut(s) 1134, 1166
FaqI GGGAC 3 cut(s) 683, 878, 1169
FatI CATG 6 cut(s) 180, 432, 755, 773, 852, 988
Fnu4HI GCNGC 3 cut(s) 746, 837, 1085
FokI GGATG 1 cut(s) 1115
Fsp4HI GCNGC 3 cut(s) 746, 837, 1085
FspBI CTAG 4 cut(s) 80, 270, 380, 1210
GlaI GCGC 3 cut(s) 830, 958, 1096
GluI GCNGC 3 cut(s) 746, 837, 1085
GsaI CCCAGC 1 cut(s) 704
HaeII RGCGCY 1 cut(s) 832
HaeIII GGCC 5 cut(s) 268, 333, 910, 951, 987
HapII CCGG 2 cut(s) 527, 1176
HhaI GCGC 3 cut(s) 831, 959, 1097
Hin1II CATG 6 cut(s) 184, 436, 759, 777, 856, 992
Hin6I GCGC 3 cut(s) 829, 957, 1095
HinP1I GCGC 3 cut(s) 829, 957, 1095
HincII GTYRAC 1 cut(s) 385
HindII GTYRAC 1 cut(s) 385
HindIII AAGCTT 1 cut(s) 456
HinfI GANTC 3 cut(s) 156, 281, 543
HpaI GTTAAC 1 cut(s) 385
HpaII CCGG 2 cut(s) 527, 1176
HphI GGTGA 7 cut(s) 152, 466, 530, 545, 559, 574, 1042
Hpy166II GTNNAC 3 cut(s) 385, 717, 795
Hpy188I TCNGA 3 cut(s) 161, 286, 1200
Hpy188III TCNNGA 3 cut(s) 262, 644, 1117
Hpy8I GTNNAC 3 cut(s) 385, 717, 795
HpyAV CCTTC 3 cut(s) 180, 519, 1136
HpyCH4III ACNGT 1 cut(s) 1056
HpyCH4V TGCA 8 cut(s) 231, 309, 419, 773, 815, 824, 992, 1113
HpyF10VI GCNNNNNNNGC 5 cut(s) 108, 701, 821, 826, 842
HpyF3I CTNAG 6 cut(s) 335, 441, 597, 642, 878, 937
Hsp92II CATG 6 cut(s) 184, 436, 759, 777, 856, 992
HspAI GCGC 3 cut(s) 829, 957, 1095
KspAI GTTAAC 1 cut(s) 385
Kzo9I GATC 4 cut(s) 130, 216, 286, 1195
LguI GCTCTTC 1 cut(s) 69
Lsp1109I GCAGC 1 cut(s) 823
LweI GCATC 3 cut(s) 240, 824, 1122
MaeI CTAG 4 cut(s) 80, 270, 380, 1210
MaeIII GTNAC 5 cut(s) 117, 140, 565, 1030, 1146
MalI GATC 4 cut(s) 132, 218, 288, 1197
MboI GATC 4 cut(s) 130, 216, 286, 1195
MboII GAAGA 4 cut(s) 17, 86, 290, 420
MlsI TGGCCA 1 cut(s) 987
MluNI TGGCCA 1 cut(s) 987
MlyI GAGTC 2 cut(s) 275, 552
MmeI TCCRAC 2 cut(s) 547, 1196
Mox20I TGGCCA 1 cut(s) 987
MroXI GAANNNNTTC 1 cut(s) 402
MscI TGGCCA 1 cut(s) 987
MseI TTAA 2 cut(s) 291, 384
MslI CAYNNNNRTG 1 cut(s) 185
Msp20I TGGCCA 1 cut(s) 987
MspI CCGG 2 cut(s) 527, 1176
MspR9I CCNGG 1 cut(s) 1177
MvnI CGCG 2 cut(s) 957, 959
MwoI GCNNNNNNNGC 5 cut(s) 108, 701, 821, 826, 842
NciI CCSGG 1 cut(s) 1177
NdeII GATC 4 cut(s) 130, 216, 286, 1195
NlaIII CATG 6 cut(s) 184, 436, 759, 777, 856, 992
NlaIV GGNNCC 1 cut(s) 894
NmeAIII GCCGAG 2 cut(s) 730, 1123
NmuCI GTSAC 5 cut(s) 117, 140, 565, 1030, 1146
NspV TTCGAA 1 cut(s) 406
PceI AGGCCT 1 cut(s) 268
PciSI GCTCTTC 1 cut(s) 69
PdmI GAANNNNTTC 1 cut(s) 402
PfeI GAWTC 1 cut(s) 156
PflMI CCANNNNNTGG 1 cut(s) 756
PinAI ACCGGT 1 cut(s) 526
PkrI GCNGC 3 cut(s) 747, 838, 1086
PleI GAGTC 2 cut(s) 275, 551
PpsI GAGTC 2 cut(s) 275, 551
PspEI GGTNACC 1 cut(s) 140
PspFI CCCAGC 1 cut(s) 700
PspN4I GGNNCC 1 cut(s) 894
PspPI GGNCC 4 cut(s) 520, 892, 950, 1161
PstNI CAGNNNCTG 1 cut(s) 596
RsaI GTAC 4 cut(s) 425, 505, 685, 1071
RsaNI GTAC 4 cut(s) 424, 504, 684, 1070
RseI CAYNNNNRTG 1 cut(s) 185
SapI GCTCTTC 1 cut(s) 69
SaqAI TTAA 2 cut(s) 291, 384
SatI GCNGC 3 cut(s) 746, 837, 1085
Sau3AI GATC 4 cut(s) 130, 216, 286, 1195
Sau96I GGNCC 4 cut(s) 520, 892, 950, 1161
ScaI AGTACT 1 cut(s) 425
SchI GAGTC 2 cut(s) 275, 552
ScrFI CCNGG 1 cut(s) 1177
SfaNI GCATC 3 cut(s) 240, 824, 1122
SfcI CTRYAG 1 cut(s) 1135
SfuI TTCGAA 1 cut(s) 406
SinI GGWCC 3 cut(s) 520, 892, 1161
SmiMI CAYNNNNRTG 1 cut(s) 185
SmlI CTYRAG 1 cut(s) 103
SmoI CTYRAG 1 cut(s) 103
SpeI ACTAGT 1 cut(s) 379
SseBI AGGCCT 1 cut(s) 268
SsiI CCGC 5 cut(s) 556, 610, 746, 959, 1084
SspMI CTAG 4 cut(s) 80, 270, 380, 1210
StuI AGGCCT 1 cut(s) 268
StyD4I CCNGG 1 cut(s) 1175
StyI CCWWGG 2 cut(s) 840, 872
TaaI ACNGT 1 cut(s) 1056
TaqI TCGA 1 cut(s) 406
TaqII GACCGA 1 cut(s) 880
TatI WGTACW 1 cut(s) 423
TauI GCSGC 2 cut(s) 748, 1087
TfiI GAWTC 1 cut(s) 156
Tru1I TTAA 2 cut(s) 291, 384
Tru9I TTAA 2 cut(s) 291, 384
TseFI GTSAC 5 cut(s) 117, 140, 565, 1030, 1146
TseI GCWGC 1 cut(s) 836
Tsp45I GTSAC 5 cut(s) 117, 140, 565, 1030, 1146
TspDTI ATGAA 2 cut(s) 291, 821
TspGWI ACGGA 1 cut(s) 491
Van91I CCANNNNNTGG 1 cut(s) 756
VpaK11BI GGWCC 3 cut(s) 520, 892, 1161
XapI RAATTY 3 cut(s) 293, 497, 1205
XmnI GAANNNNTTC 1 cut(s) 402
XspI CTAG 4 cut(s) 80, 270, 380, 1210
ZrmI AGTACT 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.