Rh6BG053500

N-acetyltransferase HLS1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0004042
Physical Location & Seq
Forward (+)
8726324 .. 8728395
2072 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG053500.1

Sequence Viewer

Length: 1212 bp
ATGGAAGAGGAAATGAGAGCCAATATATTAGTGATTAGAGAGCTGGACTCGAAAAAGGACACACCAAGAGTTGAAGAGTTAGAGAGAGGGTGTGAGGCTGGCTCAAGTGGCGAAATGTCACTCTTTACTGATCTTTTGGGTGACCCGATTTGCCGAATCCGAAACTCGCCCTCGTTCCTCATGCTGGTGGCTGAAATGGGAAAAGAAATCGTTGGGATCATCAGGGGTTGCATCAAAGTCGTTTCTTGTGGTAAAAACATCACCAGGCCTAGCAATGAAGATTCCGATCTTCAATTCAAACCCATTTGCACCAAACTTGCTTACATTCTTGGCCTTAGAGTTTCCGCTTCACACAGGAGAAAAGGTATTGGTCTGAAACTAGTTAACAGAATGGAGGAATGGTTTCGAAGAAATGGTGCAGAGTACTCTTACATGGCTACTGAGCTTGACAATAAAGCTTCACTAAATCTTTTCACCCAAAAATGCTACTACACCAAATTTCGTACCCCTTCAATTTTGGTCCAACCAGTCTTTGCTCACCGAGTCAAAACTCACCGAAACCGAGTCACCATTATTGAACTCACCCCACCAGAGGCTGAGACCCTCTACCGCCGCCAATTCTCTGCCACCGAGTTTTTTCCTCAGGACATTGATAGAATTGTGGAAAACAAGCTCAATGTAGGTACATTTTTAGCTGTCCCAACCGAGTTTTTGTGGACGGGTTTGGAAAGGTTTCTATCCAAGCCGCCCGAGTCATGGGCTGTTTTGAGTGCATGGAATTGTAAGGAGGTGTTTACATTGGAAATCAAAGGTGCATCGCTTGCACGGCGCTTAGCTGCCAAGGCAAGTCGCATGGTGGATAGGGCGCTGCCTTGGCTGAGGATACCTTCGGTCCCCAATATTTTTAGGCCATTTGGGTTGCTTTTCCTGTATGGGTTAGGAGGACAAGGCCCACGCGCAGATAAGCTGGCAAAGGTGCTTTGTGATCATGCACATAACGTAGCCAGGGAATTGGGCTGTGGGGTGGTGGTGACTGAAGTAGCCAACCAAGAACCGTTGAGGTTAGCAGTACCACATTGGAAGCGGCTATCGTGCGCTGAGGATGTGTGGTGCATCAAGAGGCTTGTTGAGGACTATAGTGATGGGTCACTTGGGGACTGGACCAAATCTCCACCCGGGTTATCAATTTTTGTTGATCCAAGGGAATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

403

Amino Acids

45.68

Weight (kDa)

8.89

Isoelectric Point (pI)

45.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 54 - 160 3.5e-13 Acetyltransferase (GNAT) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 957
AciI CCGC 5 cut(s) 345, 610, 613, 746, 1084
AclWI GGATC 2 cut(s) 224, 1190
AcsI RAATTY 2 cut(s) 497, 1205
AcuI CTGAAG 1 cut(s) 1056
AfaI GTAC 4 cut(s) 425, 505, 685, 1071
AfiI CCNNNNNNNGG 3 cut(s) 184, 592, 756
AgsI TTSAA 5 cut(s) 74, 293, 298, 513, 578
AhlI ACTAGT 1 cut(s) 379
AjnI CCWGG 2 cut(s) 263, 1004
AluBI AGCT 7 cut(s) 43, 445, 458, 673, 695, 836, 967
AluI AGCT 7 cut(s) 43, 445, 458, 673, 695, 836, 967
Alw26I GTCTC 1 cut(s) 593
AlwI GGATC 2 cut(s) 224, 1190
AlwNI CAGNNNCTG 1 cut(s) 596
Ama87I CYCGRG 2 cut(s) 749, 1175
AoxI GGCC 4 cut(s) 266, 331, 908, 949
ApeKI GCWGC 2 cut(s) 836, 868
ApoI RAATTY 2 cut(s) 497, 1205
Asp700I GAANNNNTTC 2 cut(s) 402, 732
AspLEI GCGC 4 cut(s) 831, 868, 959, 1097
AspS9I GGNCC 4 cut(s) 520, 892, 950, 1161
AsuC2I CCSGG 2 cut(s) 1176, 1177
AsuHPI GGTGA 8 cut(s) 152, 253, 466, 530, 545, 559, 574, 1042
AsuII TTCGAA 1 cut(s) 406
AvaI CYCGRG 2 cut(s) 749, 1175
AvaII GGWCC 3 cut(s) 520, 892, 1161
AxyI CCTNAGG 1 cut(s) 642
BbvCI CCTCAGC 2 cut(s) 878, 1098
BbvI GCAGC 2 cut(s) 823, 855
BccI CCATC 1 cut(s) 1136
BceAI ACGGC 1 cut(s) 842
BcgI CGANNNNNNTGC 2 cut(s) 220, 254
BciT130I CCWGG 2 cut(s) 265, 1006
BciVI GTATCC 1 cut(s) 876
BclI TGATCA 1 cut(s) 985
BcnI CCSGG 2 cut(s) 1176, 1177
BcoDI GTCTC 1 cut(s) 593
BcuI ACTAGT 1 cut(s) 379
BfaI CTAG 3 cut(s) 270, 380, 1210
BfmI CTRYAG 1 cut(s) 1135
BfoI RGCGCY 2 cut(s) 832, 869
BfuI GTATCC 1 cut(s) 876
BisI GCNGC 5 cut(s) 613, 746, 837, 869, 1085
BlpI GCTNAGC 1 cut(s) 832
BlsI GCNGC 5 cut(s) 614, 747, 838, 870, 1086
BmcAI AGTACT 1 cut(s) 425
Bme1390I CCNGG 4 cut(s) 265, 1006, 1176, 1177
Bme18I GGWCC 3 cut(s) 520, 892, 1161
BmeT110I CYCGRG 2 cut(s) 749, 1175
BmgT120I GGNCC 4 cut(s) 520, 892, 950, 1161
BmiI GGNNCC 1 cut(s) 894
BmrFI CCNGG 4 cut(s) 265, 1006, 1176, 1177
BmsI GCATC 3 cut(s) 240, 824, 1122
BplI GAGNNNNNCTC 4 cut(s) 32, 64, 86, 118
Bpu10I CCTNAGC 2 cut(s) 878, 1098
Bpu1102I GCTNAGC 1 cut(s) 832
Bpu14I TTCGAA 1 cut(s) 406
BpuEI CTTGAG 1 cut(s) 88
BpuMI CCSGG 2 cut(s) 1176, 1177
BsaBI GATNNNNATC 1 cut(s) 285
BsaI GGTCTC 1 cut(s) 593
BsaJI CCNNGG 5 cut(s) 840, 872, 1005, 1175, 1199
BsaXI ACNNNNNCTCC 6 cut(s) 349, 379, 386, 416, 1153, 1183
Bsc4I CCNNNNNNNGG 3 cut(s) 184, 592, 756
Bse1I ACTGG 2 cut(s) 527, 1163
Bse21I CCTNAGG 1 cut(s) 642
Bse3DI GCAATG 1 cut(s) 280
Bse8I GATNNNNATC 1 cut(s) 285
BseBI CCWGG 2 cut(s) 265, 1006
BseDI CCNNGG 5 cut(s) 840, 872, 1005, 1175, 1199
BseGI GGATG 1 cut(s) 1108
BseJI GATNNNNATC 1 cut(s) 285
BseLI CCNNNNNNNGG 3 cut(s) 184, 592, 756
BseMI GCAATG 1 cut(s) 280
BseMII CTCAG 5 cut(s) 432, 588, 656, 869, 1089
BseNI ACTGG 2 cut(s) 527, 1163
BseXI GCAGC 2 cut(s) 823, 855
BsgI GTGCAG 1 cut(s) 438
Bsh1236I CGCG 1 cut(s) 957
BshFI GGCC 4 cut(s) 268, 333, 910, 951
BsiHKCI CYCGRG 2 cut(s) 749, 1175
BsiSI CCGG 1 cut(s) 1176
BslFI GGGAC 3 cut(s) 683, 878, 1169
BslI CCNNNNNNNGG 3 cut(s) 184, 592, 756
BsmAI GTCTC 1 cut(s) 593
BsmFI GGGAC 3 cut(s) 683, 878, 1169
BsnI GGCC 4 cut(s) 268, 333, 910, 951
Bso31I GGTCTC 1 cut(s) 593
BsoBI CYCGRG 2 cut(s) 749, 1175
Bsp119I TTCGAA 1 cut(s) 406
Bsp143I GATC 5 cut(s) 130, 216, 286, 985, 1195
Bsp1720I GCTNAGC 1 cut(s) 832
BspACI CCGC 5 cut(s) 345, 610, 613, 746, 1084
BspANI GGCC 4 cut(s) 268, 333, 910, 951
BspCNI CTCAG 5 cut(s) 433, 589, 655, 870, 1090
BspFNI CGCG 1 cut(s) 957
BspLI GGNNCC 1 cut(s) 894
BspPI GGATC 2 cut(s) 224, 1190
BspT104I TTCGAA 1 cut(s) 406
BspTNI GGTCTC 1 cut(s) 593
BsrDI GCAATG 1 cut(s) 280
BsrI ACTGG 2 cut(s) 527, 1163
BssECI CCNNGG 5 cut(s) 840, 872, 1005, 1175, 1199
BssMI GATC 5 cut(s) 130, 216, 286, 985, 1195
BssT1I CCWWGG 3 cut(s) 840, 872, 1199
Bst2UI CCWGG 2 cut(s) 265, 1006
Bst4CI ACNGT 1 cut(s) 1056
Bst6I CTCTTC 1 cut(s) 69
BstAPI GCANNNNNTGC 1 cut(s) 821
BstBI TTCGAA 1 cut(s) 406
BstC8I GCNNGC 3 cut(s) 100, 822, 969
BstDEI CTNAG 7 cut(s) 335, 441, 597, 642, 832, 878, 1098
BstEII GGTNACC 1 cut(s) 140
BstF5I GGATG 1 cut(s) 1108
BstFNI CGCG 1 cut(s) 957
BstH2I RGCGCY 2 cut(s) 832, 869
BstHHI GCGC 4 cut(s) 831, 868, 959, 1097
BstKTI GATC 5 cut(s) 133, 219, 289, 988, 1198
BstMAI GTCTC 1 cut(s) 593
BstMBI GATC 5 cut(s) 130, 216, 286, 985, 1195
BstMWI GCNNNNNNNGC 5 cut(s) 108, 821, 826, 842, 874
BstNI CCWGG 2 cut(s) 265, 1006
BstPI GGTNACC 1 cut(s) 140
BstSCI CCNGG 4 cut(s) 263, 1004, 1174, 1175
BstSFI CTRYAG 1 cut(s) 1135
BstUI CGCG 1 cut(s) 957
BstV1I GCAGC 2 cut(s) 823, 855
BstXI CCANNNNNNTGG 1 cut(s) 1012
Bsu36I CCTNAGG 1 cut(s) 642
BsuI GTATCC 1 cut(s) 876
BsuRI GGCC 4 cut(s) 268, 333, 910, 951
BtgZI GCGATG 1 cut(s) 801
BtsCI GGATG 1 cut(s) 1108
Cac8I GCNNGC 3 cut(s) 100, 822, 969
CaiI CAGNNNCTG 1 cut(s) 596
CfoI GCGC 4 cut(s) 831, 868, 959, 1097
Cfr13I GGNCC 4 cut(s) 520, 892, 950, 1161
Cfr9I CCCGGG 1 cut(s) 1175
Csp6I GTAC 4 cut(s) 424, 504, 684, 1070
CviAII CATG 6 cut(s) 181, 433, 756, 774, 853, 989
CviQI GTAC 4 cut(s) 424, 504, 684, 1070
DdeI CTNAG 7 cut(s) 335, 441, 597, 642, 832, 878, 1098
DpnI GATC 5 cut(s) 132, 218, 288, 987, 1197
DpnII GATC 5 cut(s) 130, 216, 286, 985, 1195
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Eco130I CCWWGG 3 cut(s) 840, 872, 1199
Eco147I AGGCCT 1 cut(s) 268
Eco31I GGTCTC 1 cut(s) 593
Eco47I GGWCC 3 cut(s) 520, 892, 1161
Eco57I CTGAAG 1 cut(s) 1056
Eco81I CCTNAGG 1 cut(s) 642
Eco88I CYCGRG 2 cut(s) 749, 1175
Eco91I GGTNACC 1 cut(s) 140
EcoO65I GGTNACC 1 cut(s) 140
EcoRI GAATTC 1 cut(s) 1205
EcoRII CCWGG 2 cut(s) 263, 1004
EcoT14I CCWWGG 3 cut(s) 840, 872, 1199
ErhI CCWWGG 3 cut(s) 840, 872, 1199
FaeI CATG 6 cut(s) 184, 436, 759, 777, 856, 992
FaqI GGGAC 3 cut(s) 683, 878, 1169
FatI CATG 6 cut(s) 180, 432, 755, 773, 852, 988
FbaI TGATCA 1 cut(s) 985
Fnu4HI GCNGC 5 cut(s) 613, 746, 837, 869, 1085
FokI GGATG 1 cut(s) 1115
Fsp4HI GCNGC 5 cut(s) 613, 746, 837, 869, 1085
FspBI CTAG 3 cut(s) 270, 380, 1210
GlaI GCGC 4 cut(s) 830, 867, 958, 1096
GluI GCNGC 5 cut(s) 613, 746, 837, 869, 1085
HaeII RGCGCY 2 cut(s) 832, 869
HaeIII GGCC 4 cut(s) 268, 333, 910, 951
HapII CCGG 1 cut(s) 1176
HhaI GCGC 4 cut(s) 831, 868, 959, 1097
Hin1II CATG 6 cut(s) 184, 436, 759, 777, 856, 992
Hin6I GCGC 4 cut(s) 829, 866, 957, 1095
HinP1I GCGC 4 cut(s) 829, 866, 957, 1095
HincII GTYRAC 1 cut(s) 385
HindII GTYRAC 1 cut(s) 385
HindIII AAGCTT 1 cut(s) 456
HinfI GANTC 6 cut(s) 47, 156, 281, 543, 564, 752
HpaI GTTAAC 1 cut(s) 385
HpaII CCGG 1 cut(s) 1176
HphI GGTGA 8 cut(s) 152, 253, 466, 530, 545, 559, 574, 1042
Hpy166II GTNNAC 3 cut(s) 385, 717, 795
Hpy188I TCNGA 3 cut(s) 161, 286, 375
Hpy188III TCNNGA 2 cut(s) 644, 1117
Hpy8I GTNNAC 3 cut(s) 385, 717, 795
HpyAV CCTTC 2 cut(s) 519, 897
HpyCH4III ACNGT 1 cut(s) 1056
HpyCH4IV ACGT 1 cut(s) 999
HpyCH4V TGCA 8 cut(s) 231, 309, 419, 773, 815, 824, 992, 1113
HpyF10VI GCNNNNNNNGC 5 cut(s) 108, 821, 826, 842, 874
HpyF3I CTNAG 7 cut(s) 335, 441, 597, 642, 832, 878, 1098
HpySE526I ACGT 1 cut(s) 999
Hsp92II CATG 6 cut(s) 184, 436, 759, 777, 856, 992
HspAI GCGC 4 cut(s) 829, 866, 957, 1095
Ksp22I TGATCA 1 cut(s) 985
KspAI GTTAAC 1 cut(s) 385
Kzo9I GATC 5 cut(s) 130, 216, 286, 985, 1195
Lsp1109I GCAGC 2 cut(s) 823, 855
LweI GCATC 3 cut(s) 240, 824, 1122
MaeI CTAG 3 cut(s) 270, 380, 1210
MaeII ACGT 1 cut(s) 999
MaeIII GTNAC 5 cut(s) 117, 140, 565, 1030, 1146
MalI GATC 5 cut(s) 132, 218, 288, 987, 1197
MboI GATC 5 cut(s) 130, 216, 286, 985, 1195
MboII GAAGA 5 cut(s) 17, 86, 281, 290, 420
MluCI AATT 9 cut(s) 293, 497, 513, 617, 657, 778, 1010, 1185, 1205
MlyI GAGTC 4 cut(s) 41, 552, 573, 761
MmeI TCCRAC 1 cut(s) 547
MroXI GAANNNNTTC 2 cut(s) 402, 732
MseI TTAA 1 cut(s) 384
MslI CAYNNNNRTG 1 cut(s) 185
MspI CCGG 1 cut(s) 1176
MspR9I CCNGG 4 cut(s) 265, 1006, 1176, 1177
MvaI CCWGG 2 cut(s) 265, 1006
MvnI CGCG 1 cut(s) 957
MwoI GCNNNNNNNGC 5 cut(s) 108, 821, 826, 842, 874
NciI CCSGG 2 cut(s) 1176, 1177
NdeII GATC 5 cut(s) 130, 216, 286, 985, 1195
NlaIII CATG 6 cut(s) 184, 436, 759, 777, 856, 992
NlaIV GGNNCC 1 cut(s) 894
NmuCI GTSAC 5 cut(s) 117, 140, 565, 1030, 1146
NspV TTCGAA 1 cut(s) 406
PceI AGGCCT 1 cut(s) 268
PdmI GAANNNNTTC 2 cut(s) 402, 732
PfeI GAWTC 2 cut(s) 156, 281
PkrI GCNGC 5 cut(s) 614, 747, 838, 870, 1086
PleI GAGTC 4 cut(s) 41, 551, 572, 760
PpsI GAGTC 4 cut(s) 41, 551, 572, 760
Psp6I CCWGG 2 cut(s) 263, 1004
PspEI GGTNACC 1 cut(s) 140
PspGI CCWGG 2 cut(s) 263, 1004
PspN4I GGNNCC 1 cut(s) 894
PspPI GGNCC 4 cut(s) 520, 892, 950, 1161
PstNI CAGNNNCTG 1 cut(s) 596
RsaI GTAC 4 cut(s) 425, 505, 685, 1071
RsaNI GTAC 4 cut(s) 424, 504, 684, 1070
RseI CAYNNNNRTG 1 cut(s) 185
SaqAI TTAA 1 cut(s) 384
SatI GCNGC 5 cut(s) 613, 746, 837, 869, 1085
Sau3AI GATC 5 cut(s) 130, 216, 286, 985, 1195
Sau96I GGNCC 4 cut(s) 520, 892, 950, 1161
ScaI AGTACT 1 cut(s) 425
SchI GAGTC 4 cut(s) 41, 552, 573, 761
ScrFI CCNGG 4 cut(s) 265, 1006, 1176, 1177
SfaNI GCATC 3 cut(s) 240, 824, 1122
SfcI CTRYAG 1 cut(s) 1135
SfuI TTCGAA 1 cut(s) 406
SinI GGWCC 3 cut(s) 520, 892, 1161
SmaI CCCGGG 1 cut(s) 1177
SmiMI CAYNNNNRTG 1 cut(s) 185
SmlI CTYRAG 1 cut(s) 103
SmoI CTYRAG 1 cut(s) 103
SpeI ACTAGT 1 cut(s) 379
Sse9I AATT 9 cut(s) 293, 497, 513, 617, 657, 778, 1010, 1185, 1205
SseBI AGGCCT 1 cut(s) 268
SsiI CCGC 5 cut(s) 345, 610, 613, 746, 1084
SspI AATATT 1 cut(s) 901
SspMI CTAG 3 cut(s) 270, 380, 1210
StuI AGGCCT 1 cut(s) 268
StyD4I CCNGG 4 cut(s) 263, 1004, 1174, 1175
StyI CCWWGG 3 cut(s) 840, 872, 1199
TaaI ACNGT 1 cut(s) 1056
TaiI ACGT 1 cut(s) 1002
TaqI TCGA 2 cut(s) 50, 406
TaqII GACCGA 1 cut(s) 880
TasI AATT 9 cut(s) 293, 497, 513, 617, 657, 778, 1010, 1185, 1205
TatI WGTACW 1 cut(s) 423
TauI GCSGC 3 cut(s) 615, 748, 1087
TfiI GAWTC 2 cut(s) 156, 281
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TseFI GTSAC 5 cut(s) 117, 140, 565, 1030, 1146
TseI GCWGC 2 cut(s) 836, 868
Tsp45I GTSAC 5 cut(s) 117, 140, 565, 1030, 1146
TspDTI ATGAA 1 cut(s) 291
TspMI CCCGGG 1 cut(s) 1175
VpaK11BI GGWCC 3 cut(s) 520, 892, 1161
XapI RAATTY 2 cut(s) 497, 1205
XmaI CCCGGG 1 cut(s) 1175
XmnI GAANNNNTTC 2 cut(s) 402, 732
XspI CTAG 3 cut(s) 270, 380, 1210
ZrmI AGTACT 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.