Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042258.1

Orthogroup ID

OG0004042

Physical Location & Seq

Genomic Coordinates Reverse (-)

330 .. 689

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042258.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atggtggatagggcgctgcctcggctgaggataccttcggtccccaatatttttaggccatttgggttgcttttcctgtatgggttaggaggacaaggcccacgcgcagataagctggcaaaggtgctttgtggccatgcacaaaacgtagctagggaattgggctgtggggtggtggtgactgaagtagccaaccaagaaccgttgaggttagcagtaccacattggaagcggctatcgtgcgccgaggatgtgtggtgcatcaagaggcttgttgaggactatagtgatgggttacttggggactggaccaaatctccacccgggtcatcaatttttgttgatccaagggaattctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

119

Amino Acids

13.2

Weight (kDa)

8.43

Isoelectric Point (pI)

38.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23060 AT2G23060 AT4G37580 AT4G37580 AT5G67430 AT5G67430
fragaria_vesca	FvH4_1g17420 FvH4_2g04100
malus_domestica	MD02G1183200.v1.1 MD15G1295100.v1.1
prunus_persica	Prupe.6G222600_v2.0.a1 Prupe.8G142200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0107611 RchiOBHm_Chr6g0253471
rosa_laevigata	RLG00000015017 RLG00000017595
rosa_multiflora	Rmu_co8105006.1_g000001 Rmu_sc0000800.1_g000038 Rmu_sc0042258.1_g000001 Rmu_ssc0000079.1_g000009
rosa_roxburghii	Rroxscaffold_2G00136150 Rroxscaffold_7G00211870
rosa_rugosa	Rorug02G0146000 Rorug05G0544500
rosa_samantha	Rh2AG195300 Rh2BG207900 Rh2CG200500 Rh2DG203000 Rh6AG059500 Rh6BG053500 Rh6CG050600 Rh6DG047300
rosa_wichuraiana	Rw2G015480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	105
AciI	CCGC	1 cut(s)	232
AclWI	GGATC	1 cut(s)	338
AcoI	YGGCCR	1 cut(s)	133
AcsI	RAATTY	1 cut(s)	353
AcuI	CTGAAG	1 cut(s)	204
AfaI	GTAC	1 cut(s)	219
AluBI	AGCT	2 cut(s)	115, 152
AluI	AGCT	2 cut(s)	115, 152
AlwI	GGATC	1 cut(s)	338
Ama87I	CYCGRG	1 cut(s)	323
AoxI	GGCC	3 cut(s)	56, 97, 133
ApeKI	GCWGC	1 cut(s)	16
ApoI	RAATTY	1 cut(s)	353
AspLEI	GCGC	3 cut(s)	16, 107, 245
AspS9I	GGNCC	3 cut(s)	40, 98, 309
AsuC2I	CCSGG	2 cut(s)	324, 325
AsuHPI	GGTGA	1 cut(s)	190
AvaI	CYCGRG	1 cut(s)	323
AvaII	GGWCC	2 cut(s)	40, 309
BalI	TGGCCA	1 cut(s)	135
BbvCI	CCTCAGC	1 cut(s)	26
BbvI	GCAGC	1 cut(s)	3
BccI	CCATC	1 cut(s)	284
BciVI	GTATCC	1 cut(s)	24
BcnI	CCSGG	2 cut(s)	324, 325
BfaI	CTAG	2 cut(s)	153, 358
BfmI	CTRYAG	1 cut(s)	283
BfoI	RGCGCY	1 cut(s)	17
BfuI	GTATCC	1 cut(s)	24
BisI	GCNGC	2 cut(s)	17, 233
BlsI	GCNGC	2 cut(s)	18, 234
Bme1390I	CCNGG	2 cut(s)	324, 325
Bme18I	GGWCC	2 cut(s)	40, 309
BmeT110I	CYCGRG	1 cut(s)	323
BmgT120I	GGNCC	3 cut(s)	40, 98, 309
BmiI	GGNNCC	1 cut(s)	42
BmrFI	CCNGG	2 cut(s)	324, 325
BmsI	GCATC	1 cut(s)	270
Bpu10I	CCTNAGC	1 cut(s)	26
BpuMI	CCSGG	2 cut(s)	324, 325
BsaJI	CCNNGG	4 cut(s)	20, 246, 323, 347
BsaXI	ACNNNNNCTCC	2 cut(s)	301, 331
Bse1I	ACTGG	1 cut(s)	311
BseDI	CCNNGG	4 cut(s)	20, 246, 323, 347
BseGI	GGATG	1 cut(s)	256
BseMII	CTCAG	1 cut(s)	17
BseNI	ACTGG	1 cut(s)	311
BseXI	GCAGC	1 cut(s)	3
Bsh1236I	CGCG	1 cut(s)	105
BshFI	GGCC	3 cut(s)	58, 99, 135
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	1 cut(s)	324
BslFI	GGGAC	2 cut(s)	26, 317
BsmFI	GGGAC	2 cut(s)	26, 317
BsnI	GGCC	3 cut(s)	58, 99, 135
BsoBI	CYCGRG	1 cut(s)	323
Bsp143I	GATC	1 cut(s)	343
BspACI	CCGC	1 cut(s)	232
BspANI	GGCC	3 cut(s)	58, 99, 135
BspCNI	CTCAG	1 cut(s)	18
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	42
BspPI	GGATC	1 cut(s)	338
BsrI	ACTGG	1 cut(s)	311
BssECI	CCNNGG	4 cut(s)	20, 246, 323, 347
BssMI	GATC	1 cut(s)	343
BssT1I	CCWWGG	1 cut(s)	347
Bst4CI	ACNGT	1 cut(s)	204
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	1 cut(s)	26
BstF5I	GGATG	1 cut(s)	256
BstFNI	CGCG	1 cut(s)	105
BstH2I	RGCGCY	1 cut(s)	17
BstHHI	GCGC	3 cut(s)	16, 107, 245
BstKTI	GATC	1 cut(s)	346
BstMBI	GATC	1 cut(s)	343
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BstSCI	CCNGG	2 cut(s)	322, 323
BstSFI	CTRYAG	1 cut(s)	283
BstUI	CGCG	1 cut(s)	105
BstV1I	GCAGC	1 cut(s)	3
BsuI	GTATCC	1 cut(s)	24
BsuRI	GGCC	3 cut(s)	58, 99, 135
BtsCI	GGATG	1 cut(s)	256
Cac8I	GCNNGC	1 cut(s)	117
CfoI	GCGC	3 cut(s)	16, 107, 245
Cfr13I	GGNCC	3 cut(s)	40, 98, 309
Cfr9I	CCCGGG	1 cut(s)	323
Csp6I	GTAC	1 cut(s)	218
CviAII	CATG	1 cut(s)	137
CviQI	GTAC	1 cut(s)	218
DdeI	CTNAG	1 cut(s)	26
DpnI	GATC	1 cut(s)	345
DpnII	GATC	1 cut(s)	343
EaeI	YGGCCR	1 cut(s)	133
Eco130I	CCWWGG	1 cut(s)	347
Eco47I	GGWCC	2 cut(s)	40, 309
Eco57I	CTGAAG	1 cut(s)	204
Eco88I	CYCGRG	1 cut(s)	323
EcoRI	GAATTC	1 cut(s)	353
EcoT14I	CCWWGG	1 cut(s)	347
ErhI	CCWWGG	1 cut(s)	347
FaeI	CATG	1 cut(s)	140
FaiI	YATR	3 cut(s)	81, 138, 285
FaqI	GGGAC	2 cut(s)	26, 317
FatI	CATG	1 cut(s)	136
Fnu4HI	GCNGC	2 cut(s)	17, 233
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	2 cut(s)	17, 233
FspBI	CTAG	2 cut(s)	153, 358
GlaI	GCGC	3 cut(s)	15, 106, 244
GluI	GCNGC	2 cut(s)	17, 233
HaeII	RGCGCY	1 cut(s)	17
HaeIII	GGCC	3 cut(s)	58, 99, 135
HapII	CCGG	1 cut(s)	324
HhaI	GCGC	3 cut(s)	16, 107, 245
Hin1II	CATG	1 cut(s)	140
Hin6I	GCGC	3 cut(s)	14, 105, 243
HinP1I	GCGC	3 cut(s)	14, 105, 243
HpaII	CCGG	1 cut(s)	324
HphI	GGTGA	1 cut(s)	190
Hpy188III	TCNNGA	1 cut(s)	265
HpyAV	CCTTC	1 cut(s)	45
HpyCH4III	ACNGT	1 cut(s)	204
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	2 cut(s)	140, 261
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
HpyF3I	CTNAG	1 cut(s)	26
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	1 cut(s)	140
HspAI	GCGC	3 cut(s)	14, 105, 243
Kzo9I	GATC	1 cut(s)	343
LpnPI	CCDG	4 cut(s)	89, 101, 292, 337
Lsp1109I	GCAGC	1 cut(s)	3
LweI	GCATC	1 cut(s)	270
MaeI	CTAG	2 cut(s)	153, 358
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	2 cut(s)	178, 294
MalI	GATC	1 cut(s)	345
MboI	GATC	1 cut(s)	343
MlsI	TGGCCA	1 cut(s)	135
MluCI	AATT	3 cut(s)	158, 333, 353
MluNI	TGGCCA	1 cut(s)	135
MnlI	CCTC	7 cut(s)	21, 30, 83, 201, 241, 261, 271
Mox20I	TGGCCA	1 cut(s)	135
MscI	TGGCCA	1 cut(s)	135
Msp20I	TGGCCA	1 cut(s)	135
MspI	CCGG	1 cut(s)	324
MspR9I	CCNGG	2 cut(s)	324, 325
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	22
NciI	CCSGG	2 cut(s)	324, 325
NdeII	GATC	1 cut(s)	343
NlaIII	CATG	1 cut(s)	140
NlaIV	GGNNCC	1 cut(s)	42
NmeAIII	GCCGAG	1 cut(s)	271
NmuCI	GTSAC	1 cut(s)	178
PkrI	GCNGC	2 cut(s)	18, 234
PspN4I	GGNNCC	1 cut(s)	42
PspPI	GGNCC	3 cut(s)	40, 98, 309
RsaI	GTAC	1 cut(s)	219
RsaNI	GTAC	1 cut(s)	218
SatI	GCNGC	2 cut(s)	17, 233
Sau3AI	GATC	1 cut(s)	343
Sau96I	GGNCC	3 cut(s)	40, 98, 309
ScrFI	CCNGG	2 cut(s)	324, 325
SetI	ASST	6 cut(s)	37, 117, 126, 150, 154, 212
SfaNI	GCATC	1 cut(s)	270
SfcI	CTRYAG	1 cut(s)	283
SinI	GGWCC	2 cut(s)	40, 309
SmaI	CCCGGG	1 cut(s)	325
Sse9I	AATT	3 cut(s)	158, 333, 353
SsiI	CCGC	1 cut(s)	232
SspI	AATATT	1 cut(s)	49
SspMI	CTAG	2 cut(s)	153, 358
StyD4I	CCNGG	2 cut(s)	322, 323
StyI	CCWWGG	1 cut(s)	347
TaaI	ACNGT	1 cut(s)	204
TaiI	ACGT	1 cut(s)	150
TaqII	GACCGA	1 cut(s)	28
TasI	AATT	3 cut(s)	158, 333, 353
TauI	GCSGC	1 cut(s)	235
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	178
TspMI	CCCGGG	1 cut(s)	323
VpaK11BI	GGWCC	2 cut(s)	40, 309
XapI	RAATTY	1 cut(s)	353
XmaI	CCCGGG	1 cut(s)	323
XspI	CTAG	2 cut(s)	153, 358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.