Rh3DG323200

Belongs to the NPH3 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Reverse (-)
35200771 .. 35205133
4363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG323200.1

Sequence Viewer

Length: 330 bp
ATGTTAACAAGCAATGGGAAGATTTGCTTCTGTCAGTTTGTTCAGAAGCATTTTCTGGTAATCTACATTGTCAAAAGAAAATTCCAACAAGAAGAGAATTACATTATCAATACTAAACTTAGTGATGAGCATGTTCAAGTTTCCTTTGAAGTTTCAAGTGATCTCATAATTCAAGTGAAGGGAAGCAGATATTTGCTGCACAAGGTCACACAATTTCCACTTCTGTCGAGGTCTTTGAGGCTACAGAAGTTCTGCTATGGAATCAGTGTCCCCCTCAGTGCCCACAACATTGTAGCTAATAGCAGAAATGCTGAGTTCTTGGACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

109

Amino Acids

12.67

Weight (kDa)

9.3

Isoelectric Point (pI)

30.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 80
AgsI TTSAA 4 cut(s) 137, 149, 156, 173
AluBI AGCT 1 cut(s) 296
AluI AGCT 1 cut(s) 296
ApeKI GCWGC 1 cut(s) 196
ApoI RAATTY 1 cut(s) 80
BaeGI GKGCMC 1 cut(s) 283
BbvI GCAGC 1 cut(s) 183
BfmI CTRYAG 1 cut(s) 242
BisI GCNGC 1 cut(s) 197
BlsI GCNGC 1 cut(s) 198
Bse3DI GCAATG 1 cut(s) 19
BseMI GCAATG 1 cut(s) 19
BseMII CTCAG 2 cut(s) 289, 303
BseSI GKGCMC 1 cut(s) 283
BseXI GCAGC 1 cut(s) 183
BsgI GTGCAG 1 cut(s) 182
BslFI GGGAC 1 cut(s) 254
BsmFI GGGAC 1 cut(s) 254
Bsp1286I GDGCHC 1 cut(s) 283
Bsp143I GATC 1 cut(s) 160
BspCNI CTCAG 2 cut(s) 288, 304
BsrDI GCAATG 1 cut(s) 19
BssMI GATC 1 cut(s) 160
Bst6I CTCTTC 1 cut(s) 87
BstDEI CTNAG 3 cut(s) 119, 275, 312
BstKTI GATC 1 cut(s) 163
BstMBI GATC 1 cut(s) 160
BstNSI RCATGY 1 cut(s) 134
BstSFI CTRYAG 1 cut(s) 242
BstSLI GKGCMC 1 cut(s) 283
BstV1I GCAGC 1 cut(s) 183
BtsIMutI CAGTG 2 cut(s) 271, 283
CviAII CATG 1 cut(s) 131
CviJI RGCY 2 cut(s) 241, 296
CviKI_1 RGCY 2 cut(s) 241, 296
DdeI CTNAG 3 cut(s) 119, 275, 312
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
FaeI CATG 1 cut(s) 134
FaiI YATR 3 cut(s) 132, 167, 258
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FaqI GGGAC 1 cut(s) 254
FatI CATG 1 cut(s) 130
Fnu4HI GCNGC 1 cut(s) 197
Fsp4HI GCNGC 1 cut(s) 197
GluI GCNGC 1 cut(s) 197
Hin1II CATG 1 cut(s) 134
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 1 cut(s) 261
HpaI GTTAAC 1 cut(s) 6
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 45
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 172
HpyCH4V TGCA 1 cut(s) 199
HpyF3I CTNAG 3 cut(s) 119, 275, 312
Hsp92II CATG 1 cut(s) 134
KspAI GTTAAC 1 cut(s) 6
Kzo9I GATC 1 cut(s) 160
LpnPI CCDG 1 cut(s) 41
Lsp1109I GCAGC 1 cut(s) 183
MaeIII GTNAC 1 cut(s) 205
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 2 cut(s) 31, 104
MhlI GDGCHC 1 cut(s) 283
MluCI AATT 4 cut(s) 80, 97, 168, 212
MmeI TCCRAC 1 cut(s) 109
MnlI CCTC 3 cut(s) 222, 231, 284
MseI TTAA 1 cut(s) 5
NdeII GATC 1 cut(s) 160
NlaIII CATG 1 cut(s) 134
NmuCI GTSAC 1 cut(s) 205
NspI RCATGY 1 cut(s) 134
PfeI GAWTC 1 cut(s) 261
PkrI GCNGC 1 cut(s) 198
SaqAI TTAA 1 cut(s) 5
SatI GCNGC 1 cut(s) 197
Sau3AI GATC 1 cut(s) 160
SduI GDGCHC 1 cut(s) 283
SetI ASST 3 cut(s) 207, 233, 298
SfcI CTRYAG 1 cut(s) 242
SgeI CNNG 9 cut(s) 21, 68, 101, 143, 149, 168, 185, 214, 240
Sse9I AATT 4 cut(s) 80, 97, 168, 212
TaqI TCGA 1 cut(s) 227
TasI AATT 4 cut(s) 80, 97, 168, 212
TfiI GAWTC 1 cut(s) 261
Tru1I TTAA 1 cut(s) 5
Tru9I TTAA 1 cut(s) 5
TscAI CASTG 2 cut(s) 271, 283
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 1 cut(s) 196
Tsp45I GTSAC 1 cut(s) 205
TspRI CASTG 2 cut(s) 271, 283
XapI RAATTY 1 cut(s) 80
XceI RCATGY 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.