Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0005585

Physical Location & Seq

Genomic Coordinates Reverse (-)

35078368 .. 35091406

Gene Structure 13039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG324600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTTAACAAGCAATGGGAAGATTTGCTTCTGTCAGTTTGTTCAGAAGCATTTTCTGGCAATCTACATTGTCAAAAGAAAATTCCAACAAGAAGAGAATTACATTATCAATACTAAACTTAGTGATGAGCATGTTCAAGTTTCCTTTGAAGTTTCAAGTGATCTCATAATTCAAGTGAAGGGAAGCAGATATTTGCTGCACAAGAGGATTGCAGAAAGCCTGAATATGTCCAAAAAGAAAGTTAGGAAGTTACTCAGAATGAATCCCAGCGTCAAGCACGAACCACACTTGCATCAGGCCCATTATCAGGATATAACTCAGGGTAGAGCTCAGGATGATAATCTTCATCAACAACTTGCAACAGTTGATGATCTCGACTCTCGGAATTGGTCTCTTCCAGATCTAAACAATCTAATCCTTCTAAATGTTCATAAAGAGGCCATGCAAGTGGCCTTTGCTGCTGCTAATATGTCCCTTACTTACTCTAACAATGCTCCTAGGGAAATTTTATTCACACCTCTCAAGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

176

Amino Acids

20.41

Weight (kDa)

9.23

Isoelectric Point (pI)

32.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14820 AT2G14820
fragaria_vesca	FvH4_2g04110 FvH4_2g04110 FvH4_2g04110 FvH4_2g04110
malus_domestica	MD05G1098200.v1.1 MD10G1103900.v1.1
prunus_persica	Prupe.8G142300_v2.0.a1 Prupe.8G142300_v2.0.a1 Prupe.8G142300_v2.0.a1
pyrus_communis	pycom05g09610 pycom10g08930
rosa_chinensis	RchiOBHm_Chr6g0253481
rosa_laevigata	RLG00000015016
rosa_multiflora	Rmu_sc0030462.1_g000001 Rmu_ssc0000079.1_g000008
rosa_roxburghii	Rroxscaffold_7G00211860
rosa_rugosa	Rorug05G0544500 Rorug05G0544600 Rorug05G0544700 Rorug05G0544700
rosa_samantha	Rh3CG324600 Rh3DG323200 Rh6AG059600 Rh6BG053600 Rh6CG050700 Rh6DG047400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	80, 504
AfiI	CCNNNNNNNGG	1 cut(s)	307
AgsI	TTSAA	4 cut(s)	137, 149, 156, 173
AluBI	AGCT	1 cut(s)	329
AluI	AGCT	1 cut(s)	329
Alw21I	GWGCWC	1 cut(s)	331
Alw26I	GTCTC	1 cut(s)	396
AoxI	GGCC	3 cut(s)	297, 438, 450
ApeKI	GCWGC	3 cut(s)	196, 458, 461
ApoI	RAATTY	2 cut(s)	80, 504
AspA2I	CCTAGG	1 cut(s)	497
AspS9I	GGNCC	1 cut(s)	298
AvrII	CCTAGG	1 cut(s)	497
BanII	GRGCYC	1 cut(s)	331
Bbv12I	GWGCWC	1 cut(s)	331
BbvI	GCAGC	3 cut(s)	183, 445, 448
BcoDI	GTCTC	1 cut(s)	396
BfaI	CTAG	1 cut(s)	498
BglII	AGATCT	1 cut(s)	400
BisI	GCNGC	3 cut(s)	197, 459, 462
BlnI	CCTAGG	1 cut(s)	497
BlsI	GCNGC	3 cut(s)	198, 460, 463
BmgT120I	GGNCC	1 cut(s)	298
BmsI	GCATC	1 cut(s)	301
Bpu10I	CCTNAGC	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	506
BsaBI	GATNNNNATC	1 cut(s)	339
BsaI	GGTCTC	1 cut(s)	396
BsaJI	CCNNGG	1 cut(s)	497
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
Bse3DI	GCAATG	1 cut(s)	19
Bse8I	GATNNNNATC	1 cut(s)	339
BseDI	CCNNGG	1 cut(s)	497
BseGI	GGATG	1 cut(s)	340
BseJI	GATNNNNATC	1 cut(s)	339
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseMI	GCAATG	1 cut(s)	19
BseMII	CTCAG	3 cut(s)	268, 332, 344
BseXI	GCAGC	3 cut(s)	183, 445, 448
BseYI	CCCAGC	1 cut(s)	266
BsgI	GTGCAG	1 cut(s)	182
BshFI	GGCC	3 cut(s)	299, 440, 452
BsiHKAI	GWGCWC	1 cut(s)	331
BslFI	GGGAC	1 cut(s)	457
BslI	CCNNNNNNNGG	1 cut(s)	307
BsmAI	GTCTC	1 cut(s)	396
BsmFI	GGGAC	1 cut(s)	457
BsnI	GGCC	3 cut(s)	299, 440, 452
Bso31I	GGTCTC	1 cut(s)	396
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp143I	GATC	3 cut(s)	160, 370, 400
BspANI	GGCC	3 cut(s)	299, 440, 452
BspCNI	CTCAG	3 cut(s)	267, 331, 343
BspTNI	GGTCTC	1 cut(s)	396
BsrDI	GCAATG	1 cut(s)	19
BssECI	CCNNGG	1 cut(s)	497
BssMI	GATC	3 cut(s)	160, 370, 400
BssT1I	CCWWGG	1 cut(s)	497
Bst4CI	ACNGT	1 cut(s)	364
Bst6I	CTCTTC	2 cut(s)	87, 399
BstDEI	CTNAG	4 cut(s)	119, 254, 318, 330
BstF5I	GGATG	1 cut(s)	340
BstKTI	GATC	3 cut(s)	163, 373, 403
BstMAI	GTCTC	1 cut(s)	396
BstMBI	GATC	3 cut(s)	160, 370, 400
BstMWI	GCNNNNNNNGC	1 cut(s)	458
BstNSI	RCATGY	1 cut(s)	134
BstV1I	GCAGC	3 cut(s)	183, 445, 448
BstX2I	RGATCY	1 cut(s)	400
BstXI	CCANNNNNNTGG	1 cut(s)	448
BstYI	RGATCY	1 cut(s)	400
BsuRI	GGCC	3 cut(s)	299, 440, 452
BtsCI	GGATG	1 cut(s)	340
Cfr13I	GGNCC	1 cut(s)	298
CseI	GACGC	1 cut(s)	259
CviAII	CATG	2 cut(s)	131, 442
CviJI	RGCY	5 cut(s)	219, 299, 329, 440, 452
CviKI_1	RGCY	5 cut(s)	219, 299, 329, 440, 452
DdeI	CTNAG	4 cut(s)	119, 254, 318, 330
DpnI	GATC	3 cut(s)	162, 372, 402
DpnII	GATC	3 cut(s)	160, 370, 400
Eam1104I	CTCTTC	2 cut(s)	87, 399
EarI	CTCTTC	2 cut(s)	87, 399
Ecl136II	GAGCTC	1 cut(s)	329
Eco130I	CCWWGG	1 cut(s)	497
Eco24I	GRGCYC	1 cut(s)	331
Eco31I	GGTCTC	1 cut(s)	396
Eco53kI	GAGCTC	1 cut(s)	329
EcoICRI	GAGCTC	1 cut(s)	329
EcoT14I	CCWWGG	1 cut(s)	497
EcoT38I	GRGCYC	1 cut(s)	331
ErhI	CCWWGG	1 cut(s)	497
FaeI	CATG	2 cut(s)	134, 445
FaiI	YATR	8 cut(s)	132, 167, 227, 314, 432, 443, 470, 529
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FaqI	GGGAC	1 cut(s)	457
FatI	CATG	2 cut(s)	130, 441
Fnu4HI	GCNGC	3 cut(s)	197, 459, 462
FokI	GGATG	1 cut(s)	347
FriOI	GRGCYC	1 cut(s)	331
Fsp4HI	GCNGC	3 cut(s)	197, 459, 462
FspBI	CTAG	1 cut(s)	498
GluI	GCNGC	3 cut(s)	197, 459, 462
GsaI	CCCAGC	1 cut(s)	270
HaeIII	GGCC	3 cut(s)	299, 440, 452
HgaI	GACGC	1 cut(s)	259
Hin1II	CATG	2 cut(s)	134, 445
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	2 cut(s)	262, 377
HpaI	GTTAAC	1 cut(s)	6
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	3 cut(s)	45, 257, 384
Hpy188III	TCNNGA	4 cut(s)	308, 332, 374, 398
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	2 cut(s)	172, 428
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4V	TGCA	5 cut(s)	199, 212, 292, 359, 445
HpyF10VI	GCNNNNNNNGC	1 cut(s)	458
HpyF3I	CTNAG	4 cut(s)	119, 254, 318, 330
Hsp92II	CATG	2 cut(s)	134, 445
KspAI	GTTAAC	1 cut(s)	6
Kzo9I	GATC	3 cut(s)	160, 370, 400
LmnI	GCTCC	1 cut(s)	499
LpnPI	CCDG	8 cut(s)	41, 233, 280, 281, 293, 305, 317, 411
Lsp1109I	GCAGC	3 cut(s)	183, 445, 448
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	1 cut(s)	498
MaeIII	GTNAC	1 cut(s)	249
MalI	GATC	3 cut(s)	162, 372, 402
MboI	GATC	3 cut(s)	160, 370, 400
MboII	GAAGA	4 cut(s)	31, 104, 335, 386
MflI	RGATCY	1 cut(s)	400
MhlI	GDGCHC	1 cut(s)	331
MluCI	AATT	5 cut(s)	80, 97, 168, 385, 504
MlyI	GAGTC	1 cut(s)	371
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	3 cut(s)	198, 430, 528
MseI	TTAA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	446
MwoI	GCNNNNNNNGC	1 cut(s)	458
NdeII	GATC	3 cut(s)	160, 370, 400
NlaIII	CATG	2 cut(s)	134, 445
NspI	RCATGY	1 cut(s)	134
PfeI	GAWTC	1 cut(s)	262
PkrI	GCNGC	3 cut(s)	198, 460, 463
PleI	GAGTC	1 cut(s)	371
PpsI	GAGTC	1 cut(s)	371
Psp124BI	GAGCTC	1 cut(s)	331
PspFI	CCCAGC	1 cut(s)	266
PspPI	GGNCC	1 cut(s)	298
PsuI	RGATCY	1 cut(s)	400
RseI	CAYNNNNRTG	1 cut(s)	446
SacI	GAGCTC	1 cut(s)	331
SaqAI	TTAA	1 cut(s)	5
SatI	GCNGC	3 cut(s)	197, 459, 462
Sau3AI	GATC	3 cut(s)	160, 370, 400
Sau96I	GGNCC	1 cut(s)	298
SchI	GAGTC	1 cut(s)	371
SduI	GDGCHC	1 cut(s)	331
SetI	ASST	2 cut(s)	331, 520
SfaNI	GCATC	1 cut(s)	301
SmiMI	CAYNNNNRTG	1 cut(s)	446
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
Sse9I	AATT	5 cut(s)	80, 97, 168, 385, 504
SspMI	CTAG	1 cut(s)	498
SstI	GAGCTC	1 cut(s)	331
StyI	CCWWGG	1 cut(s)	497
TaaI	ACNGT	1 cut(s)	364
TaqI	TCGA	1 cut(s)	375
TasI	AATT	5 cut(s)	80, 97, 168, 385, 504
TfiI	GAWTC	1 cut(s)	262
Tru1I	TTAA	1 cut(s)	5
Tru9I	TTAA	1 cut(s)	5
TseI	GCWGC	3 cut(s)	196, 458, 461
TspDTI	ATGAA	3 cut(s)	275, 335, 419
XapI	RAATTY	2 cut(s)	80, 504
XceI	RCATGY	1 cut(s)	134
XmaJI	CCTAGG	1 cut(s)	497
XspI	CTAG	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.