Rh6BG053800

ATP-dependent Clp protease proteolytic

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
8773605 .. 8776407
2803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG053800.1

Sequence Viewer

Length: 1095 bp
ATGGCCACTTCTCTACTTTGTCCAAACACCTTCCTTCATGGCACCAAGATCTTCTCTGCTCCCCCCCAAAGAAGGGTCTCGCCTCCGAGAAGCCTCAAATCCGTAGCTTCCATGGCTTCGGACCACGTTCCCAAGCAGTTCAGGGAAGAGAACCTCAAAGATGGATTGATGGATAATTATAAGAATGTGCCGCAATATCTGTATGGGCTTTCTCCTTCCCAAATGGACATGTTTATGACTGAAGATAACCCTGCAAGACGCCAGTCGGAAAGTGTTACAGAGAATAGCATTTCATCCGCCAACAACTATTTGAACAATGGAGGGATGTGGAGTATGTCAGGCATGGATGAAAAGGGCCCTGCAAAATATAGTATGAGTGTGAGCATGTATCGTGGTGGTGCAAGAGGATACGGGAGACCCCGAACTGCTCCTCCGGATTTGCCTTCTTTACTATTGGATGCTCGGATTTGCTACTTGGGAATGCCGATTGTGCCAGCAGTAACTGAGCTTCTGGTTGCTCAGTTTATGTGGTTGGATTATGATAACCCCTCGAAGCCTATATATCTGTACATAAATTCATCTGGAACACAGAATGAGAAGATGGAGAGCGTTGGATCTGAAACTGAGGCATATGCCATTGCTGACATGATGAAATATGTCAAAGCAGACGTGTATACAGTGAATTGTGGCATGGCCTATGGTCAAGCAGCACTGCTTCTGTCACTTGGAGCAAAGGGTTATCGTGCTGTGCAGCCGAATTCCTCCACAAAGTTATATCTGCCTAAGGTCAGCAGGTCAAGTGGATCAGTCATTGACATGTGGATTAAGGCCAAGGAACTGGATGCAAACACCGAGTATTACATTGAGCTGCTTGCGAAAGGAACAGGGAAATCCAAGGAAGAAATTGCTAAAGACATCCGGCGCCCCAAGTATTTTCAAGGACAAGAAGCTATAGAATACGGGCTTGTTGACAAGATAATTGATTCACGTGATTCTGCATTTGAGAAACGGAATTACGATGAGATGCTTACTCAATCAAGAGCTATGAGGAGAGCCGGCGCAGGGCCTCAAGCAGCTCCATCTGGATTTAGGTGA

Protein Analysis

364

Amino Acids

40.45

Weight (kDa)

8.82

Isoelectric Point (pI)

51.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLP_protease PF00574 148 - 329 1.9e-39 Clp protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014451)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49970
fragaria_vesca FvH4_2g04150
malus_domestica MD05G1098400.v1.1 MD10G1104200.v1.1
prunus_persica Prupe.8G143200_v2.0.a1
pyrus_communis pycom05g09630 pycom10g08980
rosa_chinensis RchiOBHm_Chr6g0253511
rosa_laevigata RLG00000015013
rosa_multiflora Rmu_ssc0000079.1_g000005
rosa_roxburghii Rroxscaffold_7G00211820
rosa_rugosa Rorug05G0544700 Rorug05G0544700
rosa_samantha Rh6AG059800 Rh6BG053800 Rh6DG051100
rosa_wichuraiana Rw6G005320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 180
Acc36I ACCTGC 1 cut(s) 783
AccB1I GGYRCC 2 cut(s) 41, 921
AccI GTMKAC 1 cut(s) 674
AccIII TCCGGA 1 cut(s) 433
AciI CCGC 2 cut(s) 191, 297
AclWI GGATC 2 cut(s) 622, 811
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 574, 757
AcuI CTGAAG 1 cut(s) 261
AcvI CACGTG 1 cut(s) 989
AcyI GRCGYC 2 cut(s) 259, 922
AfaI GTAC 1 cut(s) 569
AfiI CCNNNNNNNGG 3 cut(s) 72, 73, 1062
AflIII ACRYGT 3 cut(s) 228, 669, 816
AgsI TTSAA 2 cut(s) 313, 938
AjiI CACGTC 1 cut(s) 670
AloI GAACNNNNNNTCC 2 cut(s) 415, 447
AluBI AGCT 6 cut(s) 107, 508, 868, 950, 1043, 1076
AluI AGCT 6 cut(s) 107, 508, 868, 950, 1043, 1076
Alw26I GTCTC 2 cut(s) 82, 409
AlwI GGATC 2 cut(s) 622, 811
AlwNI CAGNNNCTG 1 cut(s) 503
Aor13HI TCCGGA 1 cut(s) 433
AoxI GGCC 5 cut(s) 3, 355, 693, 828, 1064
ApaI GGGCCC 1 cut(s) 359
ApeKI GCWGC 4 cut(s) 707, 751, 868, 1073
ApoI RAATTY 2 cut(s) 574, 757
AspLEI GCGC 2 cut(s) 924, 1061
AspS9I GGNCC 4 cut(s) 121, 355, 356, 1064
AvaII GGWCC 1 cut(s) 121
AxyI CCTNAGG 1 cut(s) 783
BaeGI GKGCMC 1 cut(s) 359
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 41, 921
BanII GRGCYC 1 cut(s) 359
BarI GAAGNNNNNNTAC 2 cut(s) 492, 524
BbrPI CACGTG 1 cut(s) 989
BbvI GCAGC 4 cut(s) 719, 763, 855, 1085
BccI CCATC 4 cut(s) 155, 163, 595, 1087
BciVI GTATCC 1 cut(s) 401
BcoDI GTCTC 2 cut(s) 82, 409
BfmI CTRYAG 1 cut(s) 951
BfoI RGCGCY 1 cut(s) 925
BfuAI ACCTGC 1 cut(s) 783
BfuI GTATCC 1 cut(s) 401
BglII AGATCT 1 cut(s) 48
BisI GCNGC 5 cut(s) 191, 708, 752, 869, 1074
BlsI GCNGC 5 cut(s) 192, 709, 753, 870, 1075
Bme18I GGWCC 1 cut(s) 121
BmgBI CACGTC 1 cut(s) 670
BmgT120I GGNCC 4 cut(s) 121, 355, 356, 1064
BmiI GGNNCC 3 cut(s) 43, 357, 923
BmsI GCATC 3 cut(s) 448, 832, 1014
BoxI GACNNNNGTC 1 cut(s) 262
BpuEI CTTGAG 1 cut(s) 1053
BsaAI YACGTR 1 cut(s) 989
BsaHI GRCGYC 2 cut(s) 259, 922
BsaI GGTCTC 2 cut(s) 82, 409
BsaJI CCNNGG 3 cut(s) 111, 831, 894
BsaWI WCCGGW 1 cut(s) 433
BsaXI ACNNNNNCTCC 2 cut(s) 415, 445
Bsc4I CCNNNNNNNGG 3 cut(s) 72, 73, 1062
Bse118I RCCGGY 1 cut(s) 1055
Bse1I ACTGG 2 cut(s) 262, 843
Bse21I CCTNAGG 1 cut(s) 783
Bse3DI GCAATG 1 cut(s) 636
BseAI TCCGGA 1 cut(s) 433
BseDI CCNNGG 3 cut(s) 111, 831, 894
BseGI GGATG 6 cut(s) 293, 330, 352, 463, 847, 915
BseLI CCNNNNNNNGG 3 cut(s) 72, 73, 1062
BseMI GCAATG 1 cut(s) 636
BseMII CTCAG 3 cut(s) 495, 533, 615
BseNI ACTGG 2 cut(s) 262, 843
BseRI GAGGAG 2 cut(s) 420, 1063
BseSI GKGCMC 1 cut(s) 359
BseXI GCAGC 4 cut(s) 719, 763, 855, 1085
BsgI GTGCAG 1 cut(s) 770
BshFI GGCC 5 cut(s) 5, 357, 695, 830, 1066
BshNI GGYRCC 2 cut(s) 41, 921
BsiSI CCGG 3 cut(s) 434, 919, 1056
BslI CCNNNNNNNGG 3 cut(s) 72, 73, 1062
BsmAI GTCTC 2 cut(s) 82, 409
BsmI GAATGC 1 cut(s) 486
BsnI GGCC 5 cut(s) 5, 357, 695, 830, 1066
Bso31I GGTCTC 2 cut(s) 82, 409
Bsp120I GGGCCC 1 cut(s) 355
Bsp1286I GDGCHC 1 cut(s) 359
Bsp13I TCCGGA 1 cut(s) 433
Bsp1407I TGTACA 1 cut(s) 567
Bsp143I GATC 3 cut(s) 48, 614, 803
Bsp19I CCATGG 1 cut(s) 111
BspACI CCGC 2 cut(s) 191, 297
BspANI GGCC 5 cut(s) 5, 357, 695, 830, 1066
BspCNI CTCAG 3 cut(s) 496, 532, 616
BspEI TCCGGA 1 cut(s) 433
BspLI GGNNCC 3 cut(s) 43, 357, 923
BspMI ACCTGC 1 cut(s) 783
BspPI GGATC 2 cut(s) 622, 811
BspT107I GGYRCC 2 cut(s) 41, 921
BspTNI GGTCTC 2 cut(s) 82, 409
BsrDI GCAATG 1 cut(s) 636
BsrFI RCCGGY 1 cut(s) 1055
BsrGI TGTACA 1 cut(s) 567
BsrI ACTGG 2 cut(s) 262, 843
BssAI RCCGGY 1 cut(s) 1055
BssECI CCNNGG 3 cut(s) 111, 831, 894
BssMI GATC 3 cut(s) 48, 614, 803
BssNAI GTATAC 1 cut(s) 675
BssNI GRCGYC 2 cut(s) 259, 922
BssT1I CCWWGG 3 cut(s) 111, 831, 894
Bst1107I GTATAC 1 cut(s) 675
Bst4CI ACNGT 1 cut(s) 679
Bst6I CTCTTC 1 cut(s) 141
BstACI GRCGYC 2 cut(s) 259, 922
BstAUI TGTACA 1 cut(s) 567
BstBAI YACGTR 1 cut(s) 989
BstC8I GCNNGC 3 cut(s) 495, 873, 1057
BstDEI CTNAG 4 cut(s) 504, 519, 624, 783
BstDSI CCRYGG 1 cut(s) 111
BstF5I GGATG 6 cut(s) 293, 330, 352, 463, 847, 915
BstH2I RGCGCY 1 cut(s) 925
BstHHI GCGC 2 cut(s) 924, 1061
BstKTI GATC 3 cut(s) 51, 617, 806
BstMAI GTCTC 2 cut(s) 82, 409
BstMBI GATC 3 cut(s) 48, 614, 803
BstMWI GCNNNNNNNGC 2 cut(s) 113, 490
BstNSI RCATGY 3 cut(s) 232, 388, 820
BstPAI GACNNNNGTC 1 cut(s) 262
BstSFI CTRYAG 1 cut(s) 951
BstSLI GKGCMC 1 cut(s) 359
BstV1I GCAGC 4 cut(s) 719, 763, 855, 1085
BstX2I RGATCY 2 cut(s) 48, 614
BstXI CCANNNNNNTGG 1 cut(s) 838
BstYI RGATCY 2 cut(s) 48, 614
BstZ17I GTATAC 1 cut(s) 675
Bsu36I CCTNAGG 1 cut(s) 783
BsuI GTATCC 1 cut(s) 401
BsuRI GGCC 5 cut(s) 5, 357, 695, 830, 1066
BtgI CCRYGG 1 cut(s) 111
BtrI CACGTC 1 cut(s) 670
BtsCI GGATG 6 cut(s) 293, 330, 352, 463, 847, 915
BtsI GCAGTG 1 cut(s) 710
BtsIMutI CAGTG 2 cut(s) 684, 710
BveI ACCTGC 1 cut(s) 783
Cac8I GCNNGC 3 cut(s) 495, 873, 1057
CaiI CAGNNNCTG 1 cut(s) 503
CfoI GCGC 2 cut(s) 924, 1061
Cfr10I RCCGGY 1 cut(s) 1055
Cfr13I GGNCC 4 cut(s) 121, 355, 356, 1064
CseI GACGC 1 cut(s) 267
Csp6I GTAC 1 cut(s) 568
CviAII CATG 8 cut(s) 38, 112, 229, 343, 385, 646, 691, 817
CviQI GTAC 1 cut(s) 568
DdeI CTNAG 4 cut(s) 504, 519, 624, 783
DinI GGCGCC 1 cut(s) 923
DpnI GATC 3 cut(s) 50, 616, 805
DpnII GATC 3 cut(s) 48, 614, 803
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
EciI GGCGGA 1 cut(s) 286
Eco130I CCWWGG 3 cut(s) 111, 831, 894
Eco24I GRGCYC 1 cut(s) 359
Eco31I GGTCTC 2 cut(s) 82, 409
Eco47I GGWCC 1 cut(s) 121
Eco57I CTGAAG 1 cut(s) 261
Eco72I CACGTG 1 cut(s) 989
Eco81I CCTNAGG 1 cut(s) 783
EcoO109I RGGNCCY 3 cut(s) 355, 356, 1064
EcoRI GAATTC 1 cut(s) 757
EcoT14I CCWWGG 3 cut(s) 111, 831, 894
EcoT38I GRGCYC 1 cut(s) 359
EgeI GGCGCC 1 cut(s) 923
EheI GGCGCC 1 cut(s) 923
ErhI CCWWGG 3 cut(s) 111, 831, 894
FaeI CATG 8 cut(s) 41, 115, 232, 346, 388, 649, 694, 820
FatI CATG 8 cut(s) 37, 111, 228, 342, 384, 645, 690, 816
FauNDI CATATG 1 cut(s) 631
FblI GTMKAC 1 cut(s) 674
Fnu4HI GCNGC 5 cut(s) 191, 708, 752, 869, 1074
FokI GGATG 6 cut(s) 280, 337, 359, 470, 854, 902
FriOI GRGCYC 1 cut(s) 359
Fsp4HI GCNGC 5 cut(s) 191, 708, 752, 869, 1074
GlaI GCGC 2 cut(s) 923, 1060
GluI GCNGC 5 cut(s) 191, 708, 752, 869, 1074
HaeII RGCGCY 1 cut(s) 925
HaeIII GGCC 5 cut(s) 5, 357, 695, 830, 1066
HapII CCGG 3 cut(s) 434, 919, 1056
HgaI GACGC 1 cut(s) 267
HhaI GCGC 2 cut(s) 924, 1061
Hin1I GRCGYC 2 cut(s) 259, 922
Hin1II CATG 8 cut(s) 41, 115, 232, 346, 388, 649, 694, 820
Hin6I GCGC 2 cut(s) 922, 1059
HinP1I GCGC 2 cut(s) 922, 1059
HincII GTYRAC 1 cut(s) 970
HindII GTYRAC 1 cut(s) 970
HinfI GANTC 2 cut(s) 983, 992
HpaII CCGG 3 cut(s) 434, 919, 1056
Hpy166II GTNNAC 2 cut(s) 675, 970
Hpy188I TCNGA 5 cut(s) 87, 121, 268, 465, 619
Hpy188III TCNNGA 4 cut(s) 434, 582, 1038, 1083
Hpy8I GTNNAC 2 cut(s) 675, 970
HpyAV CCTTC 5 cut(s) 40, 44, 66, 225, 453
HpyCH4III ACNGT 1 cut(s) 679
HpyCH4IV ACGT 3 cut(s) 126, 669, 988
HpyCH4V TGCA 6 cut(s) 254, 362, 401, 751, 845, 998
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 490
HpyF3I CTNAG 4 cut(s) 504, 519, 624, 783
HpySE526I ACGT 3 cut(s) 126, 669, 988
Hsp92I GRCGYC 2 cut(s) 259, 922
Hsp92II CATG 8 cut(s) 41, 115, 232, 346, 388, 649, 694, 820
HspAI GCGC 2 cut(s) 922, 1059
KasI GGCGCC 1 cut(s) 921
Kpn2I TCCGGA 1 cut(s) 433
KroI GCCGGC 1 cut(s) 1055
KroNI GCCGGC 1 cut(s) 1057
Kzo9I GATC 3 cut(s) 48, 614, 803
LmnI GCTCC 4 cut(s) 64, 433, 728, 1081
Lsp1109I GCAGC 4 cut(s) 719, 763, 855, 1085
LweI GCATC 3 cut(s) 448, 832, 1014
MaeII ACGT 3 cut(s) 126, 669, 988
MaeIII GTNAC 3 cut(s) 274, 499, 720
MalI GATC 3 cut(s) 50, 616, 805
MboI GATC 3 cut(s) 48, 614, 803
MboII GAAGA 5 cut(s) 43, 158, 254, 610, 911
MflI RGATCY 2 cut(s) 48, 614
MhlI GDGCHC 1 cut(s) 359
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 7 cut(s) 175, 574, 682, 757, 903, 978, 1012
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 922
MmeI TCCRAC 3 cut(s) 246, 513, 592
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 433
MroNI GCCGGC 1 cut(s) 1055
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 825
MslI CAYNNNNRTG 2 cut(s) 233, 815
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 434, 919, 1056
Mva1269I GAATGC 1 cut(s) 486
MwoI GCNNNNNNNGC 2 cut(s) 113, 490
NaeI GCCGGC 1 cut(s) 1057
NarI GGCGCC 1 cut(s) 922
NcoI CCATGG 1 cut(s) 111
NdeI CATATG 1 cut(s) 631
NdeII GATC 3 cut(s) 48, 614, 803
NgoMIV GCCGGC 1 cut(s) 1055
NlaIII CATG 8 cut(s) 41, 115, 232, 346, 388, 649, 694, 820
NlaIV GGNNCC 3 cut(s) 43, 357, 923
NmuCI GTSAC 1 cut(s) 720
NspI RCATGY 3 cut(s) 232, 388, 820
PciI ACATGT 2 cut(s) 228, 816
PctI GAATGC 1 cut(s) 486
PdiI GCCGGC 1 cut(s) 1057
PfeI GAWTC 2 cut(s) 983, 992
PkrI GCNGC 5 cut(s) 192, 709, 753, 870, 1075
PluTI GGCGCC 1 cut(s) 925
PmaCI CACGTG 1 cut(s) 989
PmlI CACGTG 1 cut(s) 989
Ppu21I YACGTR 1 cut(s) 989
PscI ACATGT 2 cut(s) 228, 816
PshAI GACNNNNGTC 1 cut(s) 262
PsiI TTATAA 1 cut(s) 180
PspCI CACGTG 1 cut(s) 989
PspN4I GGNNCC 3 cut(s) 43, 357, 923
PspOMI GGGCCC 1 cut(s) 355
PspPI GGNCC 4 cut(s) 121, 355, 356, 1064
PstNI CAGNNNCTG 1 cut(s) 503
PsuI RGATCY 2 cut(s) 48, 614
RsaI GTAC 1 cut(s) 569
RsaNI GTAC 1 cut(s) 568
RseI CAYNNNNRTG 2 cut(s) 233, 815
SaqAI TTAA 1 cut(s) 825
SatI GCNGC 5 cut(s) 191, 708, 752, 869, 1074
Sau3AI GATC 3 cut(s) 48, 614, 803
Sau96I GGNCC 4 cut(s) 121, 355, 356, 1064
SduI GDGCHC 1 cut(s) 359
SfaNI GCATC 3 cut(s) 448, 832, 1014
SfcI CTRYAG 1 cut(s) 951
SfoI GGCGCC 1 cut(s) 923
SinI GGWCC 1 cut(s) 121
SmiMI CAYNNNNRTG 2 cut(s) 233, 815
SmlI CTYRAG 1 cut(s) 1068
SmoI CTYRAG 1 cut(s) 1068
Sse9I AATT 7 cut(s) 175, 574, 682, 757, 903, 978, 1012
SsiI CCGC 2 cut(s) 191, 297
SspDI GGCGCC 1 cut(s) 921
StyI CCWWGG 3 cut(s) 111, 831, 894
TaaI ACNGT 1 cut(s) 679
TaiI ACGT 3 cut(s) 129, 672, 991
TaqI TCGA 1 cut(s) 551
TasI AATT 7 cut(s) 175, 574, 682, 757, 903, 978, 1012
TatI WGTACW 1 cut(s) 567
TauI GCSGC 1 cut(s) 193
TfiI GAWTC 2 cut(s) 983, 992
Tru1I TTAA 1 cut(s) 825
Tru9I TTAA 1 cut(s) 825
TscAI CASTG 2 cut(s) 684, 717
TseFI GTSAC 1 cut(s) 720
TseI GCWGC 4 cut(s) 707, 751, 868, 1073
Tsp45I GTSAC 1 cut(s) 720
TspDTI ATGAA 5 cut(s) 26, 282, 363, 567, 665
TspGWI ACGGA 2 cut(s) 91, 1024
TspRI CASTG 2 cut(s) 684, 717
VpaK11BI GGWCC 1 cut(s) 121
XapI RAATTY 2 cut(s) 574, 757
XceI RCATGY 3 cut(s) 232, 388, 820
XmiI GTMKAC 1 cut(s) 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.