FvH4_2g12780

tRNA pseudouridine synthase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
11218202 .. 11230120
11919 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g12780.t9

Sequence Viewer

Length: 1308 bp
ATGGACTCCCTCGTCGACTCCCTCCGCCACAGAGTTCAGGAATTAGAGGCATTAAATGCCAAGTTGTCATCACAACTCGCAGTTTGTCGCTGCCATCAGGACAAGAATGAAGACTCTTCTGTAAGTTCTGACAATGCAGATGAGAAAAGCGGGAAATTGAGCTTTCAAAATAAGAAGACCATCAGGGAGAAAGTTAAAGAGAAGTTTCCGGGTTATGACACAAGGATCATGAATCACCACAGCAAGAGATATGTTGCTTTGAAAGTCATGTATTTTGGCAGAAGGTTCTATGGCTTTGCTGCAGAGGCACAGATGGATCCAACTGTTGAGTCTGAAATTTTCAAAGCTCTTGAGAAGACAAGACTTTTAATCGGTGATAAGAAGGAATCACATTACTCAAGATGTGGTAGGACAGACAAGGGAGTTTCTGCTGTTGGGCAAGTGATTGCTCTCTATTTAAGATCAAACCTCAAGGAAGCATGTGAAAACAGTGAAGATCCAAGCAAAATGATATTCCACGAACAATATGAAGGTGAAATCGATTATGTGAGGGTGCTGAATCGAGCCCTTCCGGATGATATTCGAGTTTTTGGTTGGTGTCCTGTACCATTGGGTTTCAGTGCGAGGTTTAGCTGTCTAAGCAGGGAGTATTATTATTTATTTTGGGGGGGAAATCTGAATTTCTTGGCTATGGAGACTGCTGGTAGGAAATTTGTTGGTGAACATGACTTCAGAAACTTCTGTAAGATGGATGCACTTAACGTGCACAACTACAGGCGGAAAATCACTTCATTTGCAATATCTCCTTGTGATGTGAGGTTTGAGGGAAATCAGCTTTGGGCATTTAAAATCAAAGGGAGTGCTTTCCTCTGGCATCAGGTCCGATGCATGGTTGCTATACTACTCTTGATTGGCCAAGGTCATGAATCTCCAGATGTGGTAGATGCATTACTGGATACTGACAAAATCCCGAGAAAACCTCAATATGGCATGGCGCCAGAGATTCCCTTGGTTCTTCAATTCTGTGAATTTGAGGGTCTCAAGTTCACTTGCTCTTCAGATGCCTGTCAAGCTTTGCAAATACACTTGGCTTCTGAATGTCGAAACTATCATCTCCAAGCTGCAATTTTTAATGAGGCTCTAAGATGCTGTTTGCCAGTAGAAAAAGATCAGAGCTCCTTGGATAATAATGGAACAATGAAAAAGAAATCTTCCCATGTTCCACTCATGTCGCGCCCAACTGAGCCATCGTATGAAGAGAGACGTGCAAAATTAAACACAAGAACATGCAGACTGAAGAGTTTATGA

Protein Analysis

436

Amino Acids

49.86

Weight (kDa)

8.66

Isoelectric Point (pI)

46.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 11
AccB1I GGYRCC 1 cut(s) 994
AccI GTMKAC 1 cut(s) 15
AccII CGCG 1 cut(s) 1234
AccIII TCCGGA 1 cut(s) 571
AciI CCGC 3 cut(s) 25, 150, 778
AclWI GGATC 4 cut(s) 233, 311, 324, 491
AcoI YGGCCR 1 cut(s) 913
AcsI RAATTY 4 cut(s) 336, 679, 710, 1028
AcuI CTGAAG 2 cut(s) 715, 1041
AcyI GRCGYC 1 cut(s) 995
AfaI GTAC 1 cut(s) 606
AfiI CCNNNNNNNGG 2 cut(s) 889, 986
AgsI TTSAA 4 cut(s) 167, 262, 343, 1019
AjiI CACGTC 1 cut(s) 1265
AjuI GAANNNNNNNTTGG 2 cut(s) 820, 852
AluBI AGCT 7 cut(s) 162, 347, 633, 835, 1073, 1121, 1176
AluI AGCT 7 cut(s) 162, 347, 633, 835, 1073, 1121, 1176
Alw21I GWGCWC 2 cut(s) 768, 1178
Alw26I GTCTC 3 cut(s) 689, 1043, 1255
Alw44I GTGCAC 1 cut(s) 764
AlwI GGATC 4 cut(s) 233, 311, 324, 491
Ama87I CYCGRG 1 cut(s) 970
Aor13HI TCCGGA 1 cut(s) 571
AoxI GGCC 1 cut(s) 913
ApaLI GTGCAC 1 cut(s) 764
ApeKI GCWGC 3 cut(s) 90, 299, 1121
ApoI RAATTY 4 cut(s) 336, 679, 710, 1028
AspLEI GCGC 2 cut(s) 997, 1236
AspS9I GGNCC 1 cut(s) 880
AsuC2I CCSGG 1 cut(s) 210
AsuHPI GGTGA 4 cut(s) 227, 386, 545, 731
AvaI CYCGRG 1 cut(s) 970
AvaII GGWCC 1 cut(s) 880
BaeGI GKGCMC 1 cut(s) 768
BalI TGGCCA 1 cut(s) 915
BamHI GGATCC 1 cut(s) 316
BanI GGYRCC 1 cut(s) 994
BanII GRGCYC 2 cut(s) 568, 1178
BbsI GAAGAC 3 cut(s) 117, 182, 362
Bbv12I GWGCWC 2 cut(s) 768, 1178
BbvI GCAGC 3 cut(s) 77, 286, 1108
BccI CCATC 5 cut(s) 102, 188, 307, 742, 1255
BciVI GTATCC 1 cut(s) 949
BcnI CCSGG 1 cut(s) 210
BcoDI GTCTC 3 cut(s) 689, 1043, 1255
BfmI CTRYAG 2 cut(s) 300, 772
BfoI RGCGCY 1 cut(s) 998
BfuI GTATCC 1 cut(s) 949
BisI GCNGC 3 cut(s) 91, 300, 1122
BlsI GCNGC 3 cut(s) 92, 301, 1123
Bme1390I CCNGG 1 cut(s) 210
Bme18I GGWCC 1 cut(s) 880
BmeT110I CYCGRG 1 cut(s) 970
BmgBI CACGTC 1 cut(s) 1265
BmgT120I GGNCC 1 cut(s) 880
BmiI GGNNCC 2 cut(s) 318, 996
BmrFI CCNGG 1 cut(s) 210
BmsI GCATC 6 cut(s) 742, 875, 883, 934, 1051, 1136
BpiI GAAGAC 3 cut(s) 117, 182, 362
BplI GAGNNNNNCTC 2 cut(s) 964, 996
BpmI CTGGAG 1 cut(s) 915
BpuEI CTTGAG 4 cut(s) 371, 382, 455, 1025
BpuMI CCSGG 1 cut(s) 210
Bsa29I ATCGAT 1 cut(s) 540
BsaHI GRCGYC 1 cut(s) 995
BsaI GGTCTC 1 cut(s) 1043
BsaJI CCNNGG 3 cut(s) 916, 1008, 1179
BsaWI WCCGGW 1 cut(s) 571
Bsc4I CCNNNNNNNGG 2 cut(s) 889, 986
Bse1I ACTGG 2 cut(s) 957, 1157
BseAI TCCGGA 1 cut(s) 571
BseCI ATCGAT 1 cut(s) 540
BseDI CCNNGG 3 cut(s) 916, 1008, 1179
BseGI GGATG 2 cut(s) 580, 757
BseLI CCNNNNNNNGG 2 cut(s) 889, 986
BseMII CTCAG 1 cut(s) 1233
BseNI ACTGG 2 cut(s) 957, 1157
BseSI GKGCMC 1 cut(s) 768
BseXI GCAGC 3 cut(s) 77, 286, 1108
Bsh1236I CGCG 1 cut(s) 1234
BshFI GGCC 1 cut(s) 915
BshNI GGYRCC 1 cut(s) 994
BshVI ATCGAT 1 cut(s) 540
BsiHKAI GWGCWC 2 cut(s) 768, 1178
BsiHKCI CYCGRG 1 cut(s) 970
BsiSI CCGG 2 cut(s) 209, 572
BslI CCNNNNNNNGG 2 cut(s) 889, 986
BsmAI GTCTC 3 cut(s) 689, 1043, 1255
BsmBI CGTCTC 1 cut(s) 1255
BsnI GGCC 1 cut(s) 915
Bso31I GGTCTC 1 cut(s) 1043
BsoBI CYCGRG 1 cut(s) 970
Bsp1286I GDGCHC 3 cut(s) 568, 768, 1178
Bsp13I TCCGGA 1 cut(s) 571
Bsp143I GATC 5 cut(s) 225, 316, 461, 496, 1168
BspACI CCGC 3 cut(s) 25, 150, 778
BspANI GGCC 1 cut(s) 915
BspCNI CTCAG 1 cut(s) 1234
BspDI ATCGAT 1 cut(s) 540
BspEI TCCGGA 1 cut(s) 571
BspFNI CGCG 1 cut(s) 1234
BspHI TCATGA 2 cut(s) 228, 922
BspLI GGNNCC 2 cut(s) 318, 996
BspMAI CTGCAG 1 cut(s) 304
BspPI GGATC 4 cut(s) 233, 311, 324, 491
BspQI GCTCTTC 1 cut(s) 1060
BspT107I GGYRCC 1 cut(s) 994
BspTNI GGTCTC 1 cut(s) 1043
BsrI ACTGG 2 cut(s) 957, 1157
BssECI CCNNGG 3 cut(s) 916, 1008, 1179
BssMI GATC 5 cut(s) 225, 316, 461, 496, 1168
BssNI GRCGYC 1 cut(s) 995
BssT1I CCWWGG 3 cut(s) 916, 1008, 1179
Bst4CI ACNGT 2 cut(s) 325, 491
Bst6I CTCTTC 4 cut(s) 121, 1060, 1251, 1292
BstACI GRCGYC 1 cut(s) 995
BstAPI GCANNNNNTGC 1 cut(s) 56
BstDEI CTNAG 3 cut(s) 638, 1142, 1242
BstF5I GGATG 2 cut(s) 580, 757
BstFNI CGCG 1 cut(s) 1234
BstH2I RGCGCY 1 cut(s) 998
BstHHI GCGC 2 cut(s) 997, 1236
BstKTI GATC 5 cut(s) 228, 319, 464, 499, 1171
BstMAI GTCTC 3 cut(s) 689, 1043, 1255
BstMBI GATC 5 cut(s) 225, 316, 461, 496, 1168
BstMWI GCNNNNNNNGC 4 cut(s) 56, 305, 639, 1070
BstNSI RCATGY 2 cut(s) 483, 1290
BstSCI CCNGG 1 cut(s) 208
BstSFI CTRYAG 2 cut(s) 300, 772
BstSLI GKGCMC 1 cut(s) 768
BstUI CGCG 1 cut(s) 1234
BstV1I GCAGC 3 cut(s) 77, 286, 1108
BstV2I GAAGAC 3 cut(s) 117, 182, 362
BstX2I RGATCY 2 cut(s) 316, 496
BstYI RGATCY 2 cut(s) 316, 496
Bsu15I ATCGAT 1 cut(s) 540
BsuI GTATCC 1 cut(s) 949
BsuRI GGCC 1 cut(s) 915
BsuTUI ATCGAT 1 cut(s) 540
BtrI CACGTC 1 cut(s) 1265
BtsCI GGATG 2 cut(s) 580, 757
BtsIMutI CAGTG 2 cut(s) 496, 625
CciI TCATGA 2 cut(s) 228, 922
CfoI GCGC 2 cut(s) 997, 1236
Cfr13I GGNCC 1 cut(s) 880
ClaI ATCGAT 1 cut(s) 540
Csp6I GTAC 1 cut(s) 605
CviQI GTAC 1 cut(s) 605
DdeI CTNAG 3 cut(s) 638, 1142, 1242
DinI GGCGCC 1 cut(s) 996
DpnI GATC 5 cut(s) 227, 318, 463, 498, 1170
DpnII GATC 5 cut(s) 225, 316, 461, 496, 1168
DraI TTTAAA 1 cut(s) 847
DrdI GACNNNNNNGTC 1 cut(s) 11
DseDI GACNNNNNNGTC 1 cut(s) 11
EaeI YGGCCR 1 cut(s) 913
Eam1104I CTCTTC 4 cut(s) 121, 1060, 1251, 1292
EarI CTCTTC 4 cut(s) 121, 1060, 1251, 1292
EciI GGCGGA 2 cut(s) 14, 793
Ecl136II GAGCTC 1 cut(s) 1176
Eco130I CCWWGG 3 cut(s) 916, 1008, 1179
Eco24I GRGCYC 2 cut(s) 568, 1178
Eco31I GGTCTC 1 cut(s) 1043
Eco47I GGWCC 1 cut(s) 880
Eco53kI GAGCTC 1 cut(s) 1176
Eco57I CTGAAG 2 cut(s) 715, 1041
Eco88I CYCGRG 1 cut(s) 970
EcoICRI GAGCTC 1 cut(s) 1176
EcoT14I CCWWGG 3 cut(s) 916, 1008, 1179
EcoT22I ATGCAT 2 cut(s) 890, 949
EcoT38I GRGCYC 2 cut(s) 568, 1178
EgeI GGCGCC 1 cut(s) 996
EheI GGCGCC 1 cut(s) 996
ErhI CCWWGG 3 cut(s) 916, 1008, 1179
Esp3I CGTCTC 1 cut(s) 1255
FauI CCCGC 1 cut(s) 143
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 3 cut(s) 91, 300, 1122
FokI GGATG 2 cut(s) 587, 764
FriOI GRGCYC 2 cut(s) 568, 1178
Fsp4HI GCNGC 3 cut(s) 91, 300, 1122
GlaI GCGC 2 cut(s) 996, 1235
GluI GCNGC 3 cut(s) 91, 300, 1122
GsuI CTGGAG 1 cut(s) 915
HaeII RGCGCY 1 cut(s) 998
HaeIII GGCC 1 cut(s) 915
HapII CCGG 2 cut(s) 209, 572
HhaI GCGC 2 cut(s) 997, 1236
Hin1I GRCGYC 1 cut(s) 995
Hin6I GCGC 2 cut(s) 995, 1234
HinP1I GCGC 2 cut(s) 995, 1234
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HindIII AAGCTT 1 cut(s) 1071
HinfI GANTC 9 cut(s) 5, 17, 113, 232, 329, 386, 559, 926, 1003
HpaII CCGG 2 cut(s) 209, 572
HphI GGTGA 4 cut(s) 227, 386, 545, 731
Hpy166II GTNNAC 4 cut(s) 16, 722, 766, 1047
Hpy188I TCNGA 8 cut(s) 130, 334, 678, 734, 884, 1060, 1096, 1173
Hpy8I GTNNAC 4 cut(s) 16, 722, 766, 1047
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 4 cut(s) 276, 376, 524, 578
HpyCH4III ACNGT 2 cut(s) 325, 491
HpyCH4IV ACGT 2 cut(s) 762, 1264
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 305, 639, 1070
HpyF3I CTNAG 3 cut(s) 638, 1142, 1242
HpySE526I ACGT 2 cut(s) 762, 1264
Hsp92I GRCGYC 1 cut(s) 995
HspAI GCGC 2 cut(s) 995, 1234
KasI GGCGCC 1 cut(s) 994
Kpn2I TCCGGA 1 cut(s) 571
Kzo9I GATC 5 cut(s) 225, 316, 461, 496, 1168
LguI GCTCTTC 1 cut(s) 1060
LmnI GCTCC 1 cut(s) 1181
Lsp1109I GCAGC 3 cut(s) 77, 286, 1108
LweI GCATC 6 cut(s) 742, 875, 883, 934, 1051, 1136
MaeII ACGT 2 cut(s) 762, 1264
MalI GATC 5 cut(s) 227, 318, 463, 498, 1170
MboI GATC 5 cut(s) 225, 316, 461, 496, 1168
MboII GAAGA 9 cut(s) 108, 122, 187, 367, 506, 1007, 1047, 1203, 1268
MflI RGATCY 2 cut(s) 316, 496
MhlI GDGCHC 3 cut(s) 568, 768, 1178
MlsI TGGCCA 1 cut(s) 915
MluCI AATT 9 cut(s) 41, 155, 336, 679, 710, 1019, 1028, 1125, 1271
MluNI TGGCCA 1 cut(s) 915
Mly113I GGCGCC 1 cut(s) 995
MlyI GAGTC 3 cut(s) 11, 107, 338
MmeI TCCRAC 1 cut(s) 344
Mox20I TGGCCA 1 cut(s) 915
Mph1103I ATGCAT 2 cut(s) 890, 949
MroI TCCGGA 1 cut(s) 571
MscI TGGCCA 1 cut(s) 915
MseI TTAA 8 cut(s) 53, 195, 368, 458, 759, 846, 1131, 1274
Msp20I TGGCCA 1 cut(s) 915
MspI CCGG 2 cut(s) 209, 572
MspR9I CCNGG 1 cut(s) 210
MvnI CGCG 1 cut(s) 1234
MwoI GCNNNNNNNGC 4 cut(s) 56, 305, 639, 1070
NarI GGCGCC 1 cut(s) 995
NciI CCSGG 1 cut(s) 210
NdeII GATC 5 cut(s) 225, 316, 461, 496, 1168
NlaIV GGNNCC 2 cut(s) 318, 996
NsiI ATGCAT 2 cut(s) 890, 949
NspI RCATGY 2 cut(s) 483, 1290
PagI TCATGA 2 cut(s) 228, 922
PciSI GCTCTTC 1 cut(s) 1060
PfeI GAWTC 5 cut(s) 232, 386, 559, 926, 1003
PkrI GCNGC 3 cut(s) 92, 301, 1123
PleI GAGTC 3 cut(s) 11, 107, 337
PluTI GGCGCC 1 cut(s) 998
PpsI GAGTC 3 cut(s) 11, 107, 337
Psp124BI GAGCTC 1 cut(s) 1178
PspN4I GGNNCC 2 cut(s) 318, 996
PspPI GGNCC 1 cut(s) 880
PstI CTGCAG 1 cut(s) 304
PsuI RGATCY 2 cut(s) 316, 496
RsaI GTAC 1 cut(s) 606
RsaNI GTAC 1 cut(s) 605
SacI GAGCTC 1 cut(s) 1178
SalI GTCGAC 1 cut(s) 14
SapI GCTCTTC 1 cut(s) 1060
SaqAI TTAA 8 cut(s) 53, 195, 368, 458, 759, 846, 1131, 1274
SatI GCNGC 3 cut(s) 91, 300, 1122
Sau3AI GATC 5 cut(s) 225, 316, 461, 496, 1168
Sau96I GGNCC 1 cut(s) 880
SchI GAGTC 3 cut(s) 11, 107, 338
ScrFI CCNGG 1 cut(s) 210
SduI GDGCHC 3 cut(s) 568, 768, 1178
SfaNI GCATC 6 cut(s) 742, 875, 883, 934, 1051, 1136
SfcI CTRYAG 2 cut(s) 300, 772
SfoI GGCGCC 1 cut(s) 996
SinI GGWCC 1 cut(s) 880
SmlI CTYRAG 4 cut(s) 350, 397, 470, 1040
SmoI CTYRAG 4 cut(s) 350, 397, 470, 1040
Sse9I AATT 9 cut(s) 41, 155, 336, 679, 710, 1019, 1028, 1125, 1271
SsiI CCGC 3 cut(s) 25, 150, 778
SspDI GGCGCC 1 cut(s) 994
SstI GAGCTC 1 cut(s) 1178
StyD4I CCNGG 1 cut(s) 208
StyI CCWWGG 3 cut(s) 916, 1008, 1179
TaaI ACNGT 2 cut(s) 325, 491
TaiI ACGT 2 cut(s) 765, 1267
TaqI TCGA 5 cut(s) 15, 540, 562, 583, 1102
TasI AATT 9 cut(s) 41, 155, 336, 679, 710, 1019, 1028, 1125, 1271
TfiI GAWTC 5 cut(s) 232, 386, 559, 926, 1003
Tru1I TTAA 8 cut(s) 53, 195, 368, 458, 759, 846, 1131, 1274
Tru9I TTAA 8 cut(s) 53, 195, 368, 458, 759, 846, 1131, 1274
TscAI CASTG 2 cut(s) 496, 625
TseI GCWGC 3 cut(s) 90, 299, 1121
TspDTI ATGAA 7 cut(s) 123, 245, 543, 780, 939, 1214, 1269
TspRI CASTG 2 cut(s) 496, 625
VneI GTGCAC 1 cut(s) 764
VpaK11BI GGWCC 1 cut(s) 880
XapI RAATTY 4 cut(s) 336, 679, 710, 1028
XceI RCATGY 2 cut(s) 483, 1290
XmiI GTMKAC 1 cut(s) 15
Zsp2I ATGCAT 2 cut(s) 890, 949
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.