tRNA pseudouridine synthase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G34150 |
| fragaria_vesca | FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 |
| malus_domestica | MD05G1036800.v1.1 MD05G1036900.v1.1 |
| prunus_persica | Prupe.8G045000_v2.0.a1 Prupe.8G045000_v2.0.a1 |
| pyrus_communis | pycom05g02710 pycom05g02720 |
| rosa_chinensis | RchiOBHm_Chr6g0273621 |
| rosa_laevigata | RLG00000013608 |
| rosa_multiflora | Rmu_sc0001419.1_g000001 Rmu_sc0015671.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00195210 |
| rosa_rugosa | Rorug06G0076200 Rorug06G0076300 Rorug06G0076400 |
| rosa_samantha | Rh6AG190900 Rh6BG194400 Rh6CG194300 Rh6DG186200 |
| rosa_wichuraiana | Rw6G016710 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 11 |
| AccB1I | GGYRCC | 1 cut(s) | 994 |
| AccI | GTMKAC | 1 cut(s) | 15 |
| AccII | CGCG | 1 cut(s) | 1234 |
| AccIII | TCCGGA | 1 cut(s) | 571 |
| AciI | CCGC | 3 cut(s) | 25, 150, 778 |
| AclWI | GGATC | 4 cut(s) | 233, 311, 324, 491 |
| AcoI | YGGCCR | 1 cut(s) | 913 |
| AcsI | RAATTY | 4 cut(s) | 336, 679, 710, 1028 |
| AcuI | CTGAAG | 2 cut(s) | 715, 1041 |
| AcyI | GRCGYC | 1 cut(s) | 995 |
| AfaI | GTAC | 1 cut(s) | 606 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 889, 986 |
| AgsI | TTSAA | 4 cut(s) | 167, 262, 343, 1019 |
| AjiI | CACGTC | 1 cut(s) | 1265 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 820, 852 |
| AluBI | AGCT | 7 cut(s) | 162, 347, 633, 835, 1073, 1121, 1176 |
| AluI | AGCT | 7 cut(s) | 162, 347, 633, 835, 1073, 1121, 1176 |
| Alw21I | GWGCWC | 2 cut(s) | 768, 1178 |
| Alw26I | GTCTC | 3 cut(s) | 689, 1043, 1255 |
| Alw44I | GTGCAC | 1 cut(s) | 764 |
| AlwI | GGATC | 4 cut(s) | 233, 311, 324, 491 |
| Ama87I | CYCGRG | 1 cut(s) | 970 |
| Aor13HI | TCCGGA | 1 cut(s) | 571 |
| AoxI | GGCC | 1 cut(s) | 913 |
| ApaLI | GTGCAC | 1 cut(s) | 764 |
| ApeKI | GCWGC | 3 cut(s) | 90, 299, 1121 |
| ApoI | RAATTY | 4 cut(s) | 336, 679, 710, 1028 |
| AspLEI | GCGC | 2 cut(s) | 997, 1236 |
| AspS9I | GGNCC | 1 cut(s) | 880 |
| AsuC2I | CCSGG | 1 cut(s) | 210 |
| AsuHPI | GGTGA | 4 cut(s) | 227, 386, 545, 731 |
| AvaI | CYCGRG | 1 cut(s) | 970 |
| AvaII | GGWCC | 1 cut(s) | 880 |
| BaeGI | GKGCMC | 1 cut(s) | 768 |
| BalI | TGGCCA | 1 cut(s) | 915 |
| BamHI | GGATCC | 1 cut(s) | 316 |
| BanI | GGYRCC | 1 cut(s) | 994 |
| BanII | GRGCYC | 2 cut(s) | 568, 1178 |
| BbsI | GAAGAC | 3 cut(s) | 117, 182, 362 |
| Bbv12I | GWGCWC | 2 cut(s) | 768, 1178 |
| BbvI | GCAGC | 3 cut(s) | 77, 286, 1108 |
| BccI | CCATC | 5 cut(s) | 102, 188, 307, 742, 1255 |
| BciVI | GTATCC | 1 cut(s) | 949 |
| BcnI | CCSGG | 1 cut(s) | 210 |
| BcoDI | GTCTC | 3 cut(s) | 689, 1043, 1255 |
| BfmI | CTRYAG | 2 cut(s) | 300, 772 |
| BfoI | RGCGCY | 1 cut(s) | 998 |
| BfuI | GTATCC | 1 cut(s) | 949 |
| BisI | GCNGC | 3 cut(s) | 91, 300, 1122 |
| BlsI | GCNGC | 3 cut(s) | 92, 301, 1123 |
| Bme1390I | CCNGG | 1 cut(s) | 210 |
| Bme18I | GGWCC | 1 cut(s) | 880 |
| BmeT110I | CYCGRG | 1 cut(s) | 970 |
| BmgBI | CACGTC | 1 cut(s) | 1265 |
| BmgT120I | GGNCC | 1 cut(s) | 880 |
| BmiI | GGNNCC | 2 cut(s) | 318, 996 |
| BmrFI | CCNGG | 1 cut(s) | 210 |
| BmsI | GCATC | 6 cut(s) | 742, 875, 883, 934, 1051, 1136 |
| BpiI | GAAGAC | 3 cut(s) | 117, 182, 362 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 964, 996 |
| BpmI | CTGGAG | 1 cut(s) | 915 |
| BpuEI | CTTGAG | 4 cut(s) | 371, 382, 455, 1025 |
| BpuMI | CCSGG | 1 cut(s) | 210 |
| Bsa29I | ATCGAT | 1 cut(s) | 540 |
| BsaHI | GRCGYC | 1 cut(s) | 995 |
| BsaI | GGTCTC | 1 cut(s) | 1043 |
| BsaJI | CCNNGG | 3 cut(s) | 916, 1008, 1179 |
| BsaWI | WCCGGW | 1 cut(s) | 571 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 889, 986 |
| Bse1I | ACTGG | 2 cut(s) | 957, 1157 |
| BseAI | TCCGGA | 1 cut(s) | 571 |
| BseCI | ATCGAT | 1 cut(s) | 540 |
| BseDI | CCNNGG | 3 cut(s) | 916, 1008, 1179 |
| BseGI | GGATG | 2 cut(s) | 580, 757 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 889, 986 |
| BseMII | CTCAG | 1 cut(s) | 1233 |
| BseNI | ACTGG | 2 cut(s) | 957, 1157 |
| BseSI | GKGCMC | 1 cut(s) | 768 |
| BseXI | GCAGC | 3 cut(s) | 77, 286, 1108 |
| Bsh1236I | CGCG | 1 cut(s) | 1234 |
| BshFI | GGCC | 1 cut(s) | 915 |
| BshNI | GGYRCC | 1 cut(s) | 994 |
| BshVI | ATCGAT | 1 cut(s) | 540 |
| BsiHKAI | GWGCWC | 2 cut(s) | 768, 1178 |
| BsiHKCI | CYCGRG | 1 cut(s) | 970 |
| BsiSI | CCGG | 2 cut(s) | 209, 572 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 889, 986 |
| BsmAI | GTCTC | 3 cut(s) | 689, 1043, 1255 |
| BsmBI | CGTCTC | 1 cut(s) | 1255 |
| BsnI | GGCC | 1 cut(s) | 915 |
| Bso31I | GGTCTC | 1 cut(s) | 1043 |
| BsoBI | CYCGRG | 1 cut(s) | 970 |
| Bsp1286I | GDGCHC | 3 cut(s) | 568, 768, 1178 |
| Bsp13I | TCCGGA | 1 cut(s) | 571 |
| Bsp143I | GATC | 5 cut(s) | 225, 316, 461, 496, 1168 |
| BspACI | CCGC | 3 cut(s) | 25, 150, 778 |
| BspANI | GGCC | 1 cut(s) | 915 |
| BspCNI | CTCAG | 1 cut(s) | 1234 |
| BspDI | ATCGAT | 1 cut(s) | 540 |
| BspEI | TCCGGA | 1 cut(s) | 571 |
| BspFNI | CGCG | 1 cut(s) | 1234 |
| BspHI | TCATGA | 2 cut(s) | 228, 922 |
| BspLI | GGNNCC | 2 cut(s) | 318, 996 |
| BspMAI | CTGCAG | 1 cut(s) | 304 |
| BspPI | GGATC | 4 cut(s) | 233, 311, 324, 491 |
| BspQI | GCTCTTC | 1 cut(s) | 1060 |
| BspT107I | GGYRCC | 1 cut(s) | 994 |
| BspTNI | GGTCTC | 1 cut(s) | 1043 |
| BsrI | ACTGG | 2 cut(s) | 957, 1157 |
| BssECI | CCNNGG | 3 cut(s) | 916, 1008, 1179 |
| BssMI | GATC | 5 cut(s) | 225, 316, 461, 496, 1168 |
| BssNI | GRCGYC | 1 cut(s) | 995 |
| BssT1I | CCWWGG | 3 cut(s) | 916, 1008, 1179 |
| Bst4CI | ACNGT | 2 cut(s) | 325, 491 |
| Bst6I | CTCTTC | 4 cut(s) | 121, 1060, 1251, 1292 |
| BstACI | GRCGYC | 1 cut(s) | 995 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 56 |
| BstDEI | CTNAG | 3 cut(s) | 638, 1142, 1242 |
| BstF5I | GGATG | 2 cut(s) | 580, 757 |
| BstFNI | CGCG | 1 cut(s) | 1234 |
| BstH2I | RGCGCY | 1 cut(s) | 998 |
| BstHHI | GCGC | 2 cut(s) | 997, 1236 |
| BstKTI | GATC | 5 cut(s) | 228, 319, 464, 499, 1171 |
| BstMAI | GTCTC | 3 cut(s) | 689, 1043, 1255 |
| BstMBI | GATC | 5 cut(s) | 225, 316, 461, 496, 1168 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 56, 305, 639, 1070 |
| BstNSI | RCATGY | 2 cut(s) | 483, 1290 |
| BstSCI | CCNGG | 1 cut(s) | 208 |
| BstSFI | CTRYAG | 2 cut(s) | 300, 772 |
| BstSLI | GKGCMC | 1 cut(s) | 768 |
| BstUI | CGCG | 1 cut(s) | 1234 |
| BstV1I | GCAGC | 3 cut(s) | 77, 286, 1108 |
| BstV2I | GAAGAC | 3 cut(s) | 117, 182, 362 |
| BstX2I | RGATCY | 2 cut(s) | 316, 496 |
| BstYI | RGATCY | 2 cut(s) | 316, 496 |
| Bsu15I | ATCGAT | 1 cut(s) | 540 |
| BsuI | GTATCC | 1 cut(s) | 949 |
| BsuRI | GGCC | 1 cut(s) | 915 |
| BsuTUI | ATCGAT | 1 cut(s) | 540 |
| BtrI | CACGTC | 1 cut(s) | 1265 |
| BtsCI | GGATG | 2 cut(s) | 580, 757 |
| BtsIMutI | CAGTG | 2 cut(s) | 496, 625 |
| CciI | TCATGA | 2 cut(s) | 228, 922 |
| CfoI | GCGC | 2 cut(s) | 997, 1236 |
| Cfr13I | GGNCC | 1 cut(s) | 880 |
| ClaI | ATCGAT | 1 cut(s) | 540 |
| Csp6I | GTAC | 1 cut(s) | 605 |
| CviQI | GTAC | 1 cut(s) | 605 |
| DdeI | CTNAG | 3 cut(s) | 638, 1142, 1242 |
| DinI | GGCGCC | 1 cut(s) | 996 |
| DpnI | GATC | 5 cut(s) | 227, 318, 463, 498, 1170 |
| DpnII | GATC | 5 cut(s) | 225, 316, 461, 496, 1168 |
| DraI | TTTAAA | 1 cut(s) | 847 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 11 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 11 |
| EaeI | YGGCCR | 1 cut(s) | 913 |
| Eam1104I | CTCTTC | 4 cut(s) | 121, 1060, 1251, 1292 |
| EarI | CTCTTC | 4 cut(s) | 121, 1060, 1251, 1292 |
| EciI | GGCGGA | 2 cut(s) | 14, 793 |
| Ecl136II | GAGCTC | 1 cut(s) | 1176 |
| Eco130I | CCWWGG | 3 cut(s) | 916, 1008, 1179 |
| Eco24I | GRGCYC | 2 cut(s) | 568, 1178 |
| Eco31I | GGTCTC | 1 cut(s) | 1043 |
| Eco47I | GGWCC | 1 cut(s) | 880 |
| Eco53kI | GAGCTC | 1 cut(s) | 1176 |
| Eco57I | CTGAAG | 2 cut(s) | 715, 1041 |
| Eco88I | CYCGRG | 1 cut(s) | 970 |
| EcoICRI | GAGCTC | 1 cut(s) | 1176 |
| EcoT14I | CCWWGG | 3 cut(s) | 916, 1008, 1179 |
| EcoT22I | ATGCAT | 2 cut(s) | 890, 949 |
| EcoT38I | GRGCYC | 2 cut(s) | 568, 1178 |
| EgeI | GGCGCC | 1 cut(s) | 996 |
| EheI | GGCGCC | 1 cut(s) | 996 |
| ErhI | CCWWGG | 3 cut(s) | 916, 1008, 1179 |
| Esp3I | CGTCTC | 1 cut(s) | 1255 |
| FauI | CCCGC | 1 cut(s) | 143 |
| FblI | GTMKAC | 1 cut(s) | 15 |
| Fnu4HI | GCNGC | 3 cut(s) | 91, 300, 1122 |
| FokI | GGATG | 2 cut(s) | 587, 764 |
| FriOI | GRGCYC | 2 cut(s) | 568, 1178 |
| Fsp4HI | GCNGC | 3 cut(s) | 91, 300, 1122 |
| GlaI | GCGC | 2 cut(s) | 996, 1235 |
| GluI | GCNGC | 3 cut(s) | 91, 300, 1122 |
| GsuI | CTGGAG | 1 cut(s) | 915 |
| HaeII | RGCGCY | 1 cut(s) | 998 |
| HaeIII | GGCC | 1 cut(s) | 915 |
| HapII | CCGG | 2 cut(s) | 209, 572 |
| HhaI | GCGC | 2 cut(s) | 997, 1236 |
| Hin1I | GRCGYC | 1 cut(s) | 995 |
| Hin6I | GCGC | 2 cut(s) | 995, 1234 |
| HinP1I | GCGC | 2 cut(s) | 995, 1234 |
| HincII | GTYRAC | 1 cut(s) | 16 |
| HindII | GTYRAC | 1 cut(s) | 16 |
| HindIII | AAGCTT | 1 cut(s) | 1071 |
| HinfI | GANTC | 9 cut(s) | 5, 17, 113, 232, 329, 386, 559, 926, 1003 |
| HpaII | CCGG | 2 cut(s) | 209, 572 |
| HphI | GGTGA | 4 cut(s) | 227, 386, 545, 731 |
| Hpy166II | GTNNAC | 4 cut(s) | 16, 722, 766, 1047 |
| Hpy188I | TCNGA | 8 cut(s) | 130, 334, 678, 734, 884, 1060, 1096, 1173 |
| Hpy8I | GTNNAC | 4 cut(s) | 16, 722, 766, 1047 |
| Hpy99I | CGWCG | 1 cut(s) | 17 |
| HpyAV | CCTTC | 4 cut(s) | 276, 376, 524, 578 |
| HpyCH4III | ACNGT | 2 cut(s) | 325, 491 |
| HpyCH4IV | ACGT | 2 cut(s) | 762, 1264 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 56, 305, 639, 1070 |
| HpyF3I | CTNAG | 3 cut(s) | 638, 1142, 1242 |
| HpySE526I | ACGT | 2 cut(s) | 762, 1264 |
| Hsp92I | GRCGYC | 1 cut(s) | 995 |
| HspAI | GCGC | 2 cut(s) | 995, 1234 |
| KasI | GGCGCC | 1 cut(s) | 994 |
| Kpn2I | TCCGGA | 1 cut(s) | 571 |
| Kzo9I | GATC | 5 cut(s) | 225, 316, 461, 496, 1168 |
| LguI | GCTCTTC | 1 cut(s) | 1060 |
| LmnI | GCTCC | 1 cut(s) | 1181 |
| Lsp1109I | GCAGC | 3 cut(s) | 77, 286, 1108 |
| LweI | GCATC | 6 cut(s) | 742, 875, 883, 934, 1051, 1136 |
| MaeII | ACGT | 2 cut(s) | 762, 1264 |
| MalI | GATC | 5 cut(s) | 227, 318, 463, 498, 1170 |
| MboI | GATC | 5 cut(s) | 225, 316, 461, 496, 1168 |
| MboII | GAAGA | 9 cut(s) | 108, 122, 187, 367, 506, 1007, 1047, 1203, 1268 |
| MflI | RGATCY | 2 cut(s) | 316, 496 |
| MhlI | GDGCHC | 3 cut(s) | 568, 768, 1178 |
| MlsI | TGGCCA | 1 cut(s) | 915 |
| MluCI | AATT | 9 cut(s) | 41, 155, 336, 679, 710, 1019, 1028, 1125, 1271 |
| MluNI | TGGCCA | 1 cut(s) | 915 |
| Mly113I | GGCGCC | 1 cut(s) | 995 |
| MlyI | GAGTC | 3 cut(s) | 11, 107, 338 |
| MmeI | TCCRAC | 1 cut(s) | 344 |
| Mox20I | TGGCCA | 1 cut(s) | 915 |
| Mph1103I | ATGCAT | 2 cut(s) | 890, 949 |
| MroI | TCCGGA | 1 cut(s) | 571 |
| MscI | TGGCCA | 1 cut(s) | 915 |
| MseI | TTAA | 8 cut(s) | 53, 195, 368, 458, 759, 846, 1131, 1274 |
| Msp20I | TGGCCA | 1 cut(s) | 915 |
| MspI | CCGG | 2 cut(s) | 209, 572 |
| MspR9I | CCNGG | 1 cut(s) | 210 |
| MvnI | CGCG | 1 cut(s) | 1234 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 56, 305, 639, 1070 |
| NarI | GGCGCC | 1 cut(s) | 995 |
| NciI | CCSGG | 1 cut(s) | 210 |
| NdeII | GATC | 5 cut(s) | 225, 316, 461, 496, 1168 |
| NlaIV | GGNNCC | 2 cut(s) | 318, 996 |
| NsiI | ATGCAT | 2 cut(s) | 890, 949 |
| NspI | RCATGY | 2 cut(s) | 483, 1290 |
| PagI | TCATGA | 2 cut(s) | 228, 922 |
| PciSI | GCTCTTC | 1 cut(s) | 1060 |
| PfeI | GAWTC | 5 cut(s) | 232, 386, 559, 926, 1003 |
| PkrI | GCNGC | 3 cut(s) | 92, 301, 1123 |
| PleI | GAGTC | 3 cut(s) | 11, 107, 337 |
| PluTI | GGCGCC | 1 cut(s) | 998 |
| PpsI | GAGTC | 3 cut(s) | 11, 107, 337 |
| Psp124BI | GAGCTC | 1 cut(s) | 1178 |
| PspN4I | GGNNCC | 2 cut(s) | 318, 996 |
| PspPI | GGNCC | 1 cut(s) | 880 |
| PstI | CTGCAG | 1 cut(s) | 304 |
| PsuI | RGATCY | 2 cut(s) | 316, 496 |
| RsaI | GTAC | 1 cut(s) | 606 |
| RsaNI | GTAC | 1 cut(s) | 605 |
| SacI | GAGCTC | 1 cut(s) | 1178 |
| SalI | GTCGAC | 1 cut(s) | 14 |
| SapI | GCTCTTC | 1 cut(s) | 1060 |
| SaqAI | TTAA | 8 cut(s) | 53, 195, 368, 458, 759, 846, 1131, 1274 |
| SatI | GCNGC | 3 cut(s) | 91, 300, 1122 |
| Sau3AI | GATC | 5 cut(s) | 225, 316, 461, 496, 1168 |
| Sau96I | GGNCC | 1 cut(s) | 880 |
| SchI | GAGTC | 3 cut(s) | 11, 107, 338 |
| ScrFI | CCNGG | 1 cut(s) | 210 |
| SduI | GDGCHC | 3 cut(s) | 568, 768, 1178 |
| SfaNI | GCATC | 6 cut(s) | 742, 875, 883, 934, 1051, 1136 |
| SfcI | CTRYAG | 2 cut(s) | 300, 772 |
| SfoI | GGCGCC | 1 cut(s) | 996 |
| SinI | GGWCC | 1 cut(s) | 880 |
| SmlI | CTYRAG | 4 cut(s) | 350, 397, 470, 1040 |
| SmoI | CTYRAG | 4 cut(s) | 350, 397, 470, 1040 |
| Sse9I | AATT | 9 cut(s) | 41, 155, 336, 679, 710, 1019, 1028, 1125, 1271 |
| SsiI | CCGC | 3 cut(s) | 25, 150, 778 |
| SspDI | GGCGCC | 1 cut(s) | 994 |
| SstI | GAGCTC | 1 cut(s) | 1178 |
| StyD4I | CCNGG | 1 cut(s) | 208 |
| StyI | CCWWGG | 3 cut(s) | 916, 1008, 1179 |
| TaaI | ACNGT | 2 cut(s) | 325, 491 |
| TaiI | ACGT | 2 cut(s) | 765, 1267 |
| TaqI | TCGA | 5 cut(s) | 15, 540, 562, 583, 1102 |
| TasI | AATT | 9 cut(s) | 41, 155, 336, 679, 710, 1019, 1028, 1125, 1271 |
| TfiI | GAWTC | 5 cut(s) | 232, 386, 559, 926, 1003 |
| Tru1I | TTAA | 8 cut(s) | 53, 195, 368, 458, 759, 846, 1131, 1274 |
| Tru9I | TTAA | 8 cut(s) | 53, 195, 368, 458, 759, 846, 1131, 1274 |
| TscAI | CASTG | 2 cut(s) | 496, 625 |
| TseI | GCWGC | 3 cut(s) | 90, 299, 1121 |
| TspDTI | ATGAA | 7 cut(s) | 123, 245, 543, 780, 939, 1214, 1269 |
| TspRI | CASTG | 2 cut(s) | 496, 625 |
| VneI | GTGCAC | 1 cut(s) | 764 |
| VpaK11BI | GGWCC | 1 cut(s) | 880 |
| XapI | RAATTY | 4 cut(s) | 336, 679, 710, 1028 |
| XceI | RCATGY | 2 cut(s) | 483, 1290 |
| XmiI | GTMKAC | 1 cut(s) | 15 |
| Zsp2I | ATGCAT | 2 cut(s) | 890, 949 |