Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003550

Physical Location & Seq

Genomic Coordinates Forward (+)

3218852 .. 3222604

Gene Structure 3753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g02710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGTCCATGGAAGTCGCGGACAGAGACCCCATCACCAACCTACAGTCCCTGGTCGACTCCCTCAAGCACAGAGTTCAGGAATTAGAGGTTGTGAATGCCAAATTGTCATCTCAACTTGCAAATTGTTGCTGTCATGAGAGGAACTCAGTGGGCTTATATTTTGCTCACAAGGCACTAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990481

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

61

Amino Acids

6.67

Weight (kDa)

6.24

Isoelectric Point (pI)

40.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34150
fragaria_vesca	FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780
malus_domestica	MD05G1036800.v1.1 MD05G1036900.v1.1
prunus_persica	Prupe.8G045000_v2.0.a1 Prupe.8G045000_v2.0.a1
pyrus_communis	pycom05g02710 pycom05g02720
rosa_chinensis	RchiOBHm_Chr6g0273621
rosa_laevigata	RLG00000013608
rosa_multiflora	Rmu_sc0001419.1_g000001 Rmu_sc0015671.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195210
rosa_rugosa	Rorug06G0076200 Rorug06G0076300 Rorug06G0076400
rosa_samantha	Rh6AG190900 Rh6BG194400 Rh6CG194300 Rh6DG186200
rosa_wichuraiana	Rw6G016710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	54
AccII	CGCG	1 cut(s)	17
AciI	CCGC	1 cut(s)	17
AjnI	CCWGG	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	18
AlwNI	CAGNNNCTG	1 cut(s)	49
AsuHPI	GGTGA	1 cut(s)	25
BccI	CCATC	1 cut(s)	38
BciT130I	CCWGG	1 cut(s)	50
BcoDI	GTCTC	1 cut(s)	18
BfaI	CTAG	1 cut(s)	176
BfmI	CTRYAG	1 cut(s)	41
Bme1390I	CCNGG	1 cut(s)	50
BmrFI	CCNGG	1 cut(s)	50
BplI	GAGNNNNNCTC	2 cut(s)	128, 160
BpuEI	CTTGAG	1 cut(s)	47
BsaI	GGTCTC	1 cut(s)	18
BsaJI	CCNNGG	2 cut(s)	6, 48
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	2 cut(s)	6, 48
BseMII	CTCAG	1 cut(s)	159
Bsh1236I	CGCG	1 cut(s)	17
BslFI	GGGAC	1 cut(s)	31
BsmAI	GTCTC	1 cut(s)	18
BsmFI	GGGAC	1 cut(s)	31
BsmI	GAATGC	1 cut(s)	100
Bso31I	GGTCTC	1 cut(s)	18
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	1 cut(s)	17
BspCNI	CTCAG	1 cut(s)	158
BspFNI	CGCG	1 cut(s)	17
BspHI	TCATGA	1 cut(s)	133
BspTNI	GGTCTC	1 cut(s)	18
BssECI	CCNNGG	2 cut(s)	6, 48
BssT1I	CCWWGG	1 cut(s)	6
Bst2UI	CCWGG	1 cut(s)	50
Bst4CI	ACNGT	1 cut(s)	45
BstDEI	CTNAG	1 cut(s)	145
BstDSI	CCRYGG	1 cut(s)	6
BstFNI	CGCG	1 cut(s)	17
BstMAI	GTCTC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	48
BstSFI	CTRYAG	1 cut(s)	41
BstUI	CGCG	1 cut(s)	17
BtgI	CCRYGG	1 cut(s)	6
BtsIMutI	CAGTG	1 cut(s)	153
CaiI	CAGNNNCTG	1 cut(s)	49
CciI	TCATGA	1 cut(s)	133
CviAII	CATG	2 cut(s)	7, 134
CviJI	RGCY	1 cut(s)	153
CviKI_1	RGCY	1 cut(s)	153
DdeI	CTNAG	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	6
Eco31I	GGTCTC	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	48
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	2 cut(s)	10, 137
FaiI	YATR	3 cut(s)	8, 135, 157
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	2 cut(s)	6, 133
FblI	GTMKAC	1 cut(s)	54
FspBI	CTAG	1 cut(s)	176
Hin1II	CATG	2 cut(s)	10, 137
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	1 cut(s)	56
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188III	TCNNGA	2 cut(s)	77, 134
Hpy8I	GTNNAC	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	45
HpyCH4V	TGCA	1 cut(s)	119
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	1 cut(s)	145
Hsp92II	CATG	2 cut(s)	10, 137
LpnPI	CCDG	3 cut(s)	35, 62, 62
MaeI	CTAG	1 cut(s)	176
MluCI	AATT	3 cut(s)	80, 101, 121
MlyI	GAGTC	1 cut(s)	50
MnlI	CCTC	3 cut(s)	71, 79, 132
MslI	CAYNNNNRTG	1 cut(s)	178
MspR9I	CCNGG	1 cut(s)	50
Mva1269I	GAATGC	1 cut(s)	100
MvaI	CCWGG	1 cut(s)	50
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	170
NcoI	CCATGG	1 cut(s)	6
NlaIII	CATG	2 cut(s)	10, 137
PagI	TCATGA	1 cut(s)	133
PctI	GAATGC	1 cut(s)	100
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
PstNI	CAGNNNCTG	1 cut(s)	49
RseI	CAYNNNNRTG	1 cut(s)	178
SalI	GTCGAC	1 cut(s)	53
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	1 cut(s)	50
SetI	ASST	2 cut(s)	42, 90
SfcI	CTRYAG	1 cut(s)	41
SgeI	CNNG	8 cut(s)	19, 28, 61, 62, 76, 89, 128, 146
SmiMI	CAYNNNNRTG	1 cut(s)	178
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	3 cut(s)	80, 101, 121
SsiI	CCGC	1 cut(s)	17
SspMI	CTAG	1 cut(s)	176
StyD4I	CCNGG	1 cut(s)	48
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	1 cut(s)	45
TaqI	TCGA	1 cut(s)	54
TasI	AATT	3 cut(s)	80, 101, 121
TscAI	CASTG	1 cut(s)	153
TspRI	CASTG	1 cut(s)	153
XmiI	GTMKAC	1 cut(s)	54
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.