Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003550

Physical Location & Seq

Genomic Coordinates Reverse (-)

10132575 .. 10134044

Gene Structure 1470 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0076400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1470 bp

ATGGAAACTAAATCCCATCAGCAGCTTCACATTTTCTTCTTTCCTTTTATGGCTCAAGGACACAGCGTACCTGCCATAGAGATAGCCAAACAATTTGCGTCTTACTCAGTAAAATGCACCATAATAACCACGCCTCTCAATGCACCACAATTTTCCAAAGCGACCCAAAGAAGGAAAATATTGGGGTTTGATTATGAAATCGAACTTCTACTCCTGAAGTTCCCCTCTGTTGAGGCTGGGTTGCCACAAGAATGTGAGAGTTTTAGCTTGGCTACGACACAAGAGATGGAGCTAAAATTCTTCAAGGCCGTCACTTTGCTTCAACCACAACTTGAGCAGATTTTGGACCAACACCGTCCTCATTGTCTCGTTGCTGATGCCTTGTTTCCTTGGGCTACAAATGTTGCTGCAAAATTTGGAATTCCAAGCCTTCTCTTTCATGGAACCGGTTTTTTCTCATTGTGTGCTTCAATGAGTATGATAATACATCAACCTCACTTGAAGTTGTCATCTGATTCAGAGTCTTTTTCCATTCCTAATTTCCCATTTGAGATGAAGATGACAGGAAGCCAAATACCAGCTTATTTAAAGCTGAATATTGAAAATGAATTCACCAAGTTGTTTAAATTATCCAAGGACGCTGAGGAAAGGAGCTATGGGGTTATTGTTAACAGCTTCTATGAACTTGAACCAGATTATGCAGATCACTATAGGAAGATGTTTGGGAGGAAGACATGGCATATAGGCCCGGTGTCACTGTACAACAAGGCAGCCGAAGATAAAGTAGAGAGGGGATGCATGGAAAGTTCCATTGAGGAAGTGCACCAGTGCTTATATTGGCTTAATTCTAAGAAACCCAAGACAGTTGTTTATGCATGTTTTGGAAGCCTGACCAATTTCAGTGATTCTCAGCTTCTGGAAATTGCAGTGGGGCTAGAGGCTAGCGGGCAAGAGTTCATTTGGGTTGTGAAGAAAGAAGAGAAAGATAAAGAAGAGTGGTTGCCTGAAGGGTTTGAGCAGAGAATGGAAGGTAAGGGACTCATTATAAGAGGCTGGGCTCCCCAAGTGCTGATTCTTGAGCATGAAGCAGTTGGAGGCTTTGTGACTCATTGTGGGTGGAACTCAATCCTTGAAGGAGTGTCTGTTGGTGTGCCAATGATCACATGGCCAGTCTCGGCTGAGCAGATTTTTAATGAAAAGTTGGTGACTGAGATACTTAGAACTGGTGTTGCTGTTGGTGCTCAGCAATGGGGTACAGTTGCAGATGAAAGTGTGAAGATGGAGGCTAGTGTAAAGAGGGAGGCAATAGAAGAGGCTGTGAGTCAAATGATGGTGGGGGATGAAGCATTGGCAATGAGAAGCAGAGCTAAAGAGCTAGGAAAGATGGCAAGGAGGGCAGTTGAAGAAGGCGGTTCATCATTCAAGGATTTAAGTGCTCTAATTTCTGAGTTGAGGTCCCTTTCGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990481

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

489

Amino Acids

54.97

Weight (kDa)

5.58

Isoelectric Point (pI)

52.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	280 - 403	3.9e-20	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34150
fragaria_vesca	FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780
malus_domestica	MD05G1036800.v1.1 MD05G1036900.v1.1
prunus_persica	Prupe.8G045000_v2.0.a1 Prupe.8G045000_v2.0.a1
pyrus_communis	pycom05g02710 pycom05g02720
rosa_chinensis	RchiOBHm_Chr6g0273621
rosa_laevigata	RLG00000013608
rosa_multiflora	Rmu_sc0001419.1_g000001 Rmu_sc0015671.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195210
rosa_rugosa	Rorug06G0076200 Rorug06G0076300 Rorug06G0076400
rosa_samantha	Rh6AG190900 Rh6BG194400 Rh6CG194300 Rh6DG186200
rosa_wichuraiana	Rw6G016710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1046
Acc36I	ACCTGC	1 cut(s)	79
AciI	CCGC	2 cut(s)	945, 1410
AcoI	YGGCCR	1 cut(s)	1166
AcsI	RAATTY	4 cut(s)	296, 413, 420, 608
AcuI	CTGAAG	2 cut(s)	236, 1026
AfaI	GTAC	3 cut(s)	69, 761, 1255
AfiI	CCNNNNNNNGG	1 cut(s)	171
AgeI	ACCGGT	1 cut(s)	446
AgsI	TTSAA	9 cut(s)	304, 323, 471, 502, 602, 689, 1133, 1403, 1423
AjuI	GAANNNNNNNTTGG	2 cut(s)	1056, 1088
AloI	GAACNNNNNNTCC	2 cut(s)	195, 227
Alw21I	GWGCWC	3 cut(s)	825, 1243, 1438
Alw26I	GTCTC	2 cut(s)	371, 1177
Alw44I	GTGCAC	1 cut(s)	821
AlwNI	CAGNNNCTG	1 cut(s)	916
AoxI	GGCC	3 cut(s)	306, 745, 1166
ApaLI	GTGCAC	1 cut(s)	821
ApeKI	GCWGC	3 cut(s)	22, 407, 770
ApoI	RAATTY	4 cut(s)	296, 413, 420, 608
AsiGI	ACCGGT	1 cut(s)	446
AspS9I	GGNCC	3 cut(s)	346, 746, 1455
AsuC2I	CCSGG	1 cut(s)	749
AsuHPI	GGTGA	2 cut(s)	604, 1216
AsuNHI	GCTAGC	1 cut(s)	941
AvaII	GGWCC	2 cut(s)	346, 1455
BaeGI	GKGCMC	1 cut(s)	825
BalI	TGGCCA	1 cut(s)	1168
BanII	GRGCYC	1 cut(s)	1060
BbsI	GAAGAC	1 cut(s)	737
Bbv12I	GWGCWC	3 cut(s)	825, 1243, 1438
BbvCI	CCTCAGC	1 cut(s)	642
BbvI	GCAGC	3 cut(s)	34, 394, 782
BccI	CCATC	5 cut(s)	24, 280, 1273, 1324, 1378
BceAI	ACGGC	1 cut(s)	293
BclI	TGATCA	1 cut(s)	1158
BcnI	CCSGG	1 cut(s)	749
BcoDI	GTCTC	2 cut(s)	371, 1177
BfaI	CTAG	4 cut(s)	935, 942, 1287, 1376
BfmI	CTRYAG	1 cut(s)	709
BfuAI	ACCTGC	1 cut(s)	79
BisI	GCNGC	3 cut(s)	23, 408, 771
BlpI	GCTNAGC	2 cut(s)	1179, 1242
BlsI	GCNGC	3 cut(s)	24, 409, 772
Bme1390I	CCNGG	1 cut(s)	749
Bme18I	GGWCC	2 cut(s)	346, 1455
BmgT120I	GGNCC	3 cut(s)	346, 746, 1455
BmiI	GGNNCC	3 cut(s)	445, 1059, 1457
BmrFI	CCNGG	1 cut(s)	749
BmsI	GCATC	2 cut(s)	367, 785
BmtI	GCTAGC	1 cut(s)	945
BpiI	GAAGAC	1 cut(s)	737
Bpu10I	CCTNAGC	1 cut(s)	642
Bpu1102I	GCTNAGC	2 cut(s)	1179, 1242
BpuEI	CTTGAG	3 cut(s)	39, 353, 1097
BpuMI	CCSGG	1 cut(s)	749
BsaJI	CCNNGG	2 cut(s)	389, 633
BsaWI	WCCGGW	1 cut(s)	446
BsaXI	ACNNNNNCTCC	6 cut(s)	195, 225, 1086, 1116, 1128, 1158
Bsc4I	CCNNNNNNNGG	1 cut(s)	171
Bse118I	RCCGGY	1 cut(s)	446
Bse1I	ACTGG	3 cut(s)	826, 1169, 1228
Bse3DI	GCAATG	2 cut(s)	1253, 1359
BseDI	CCNNGG	2 cut(s)	389, 633
BseGI	GGATG	2 cut(s)	800, 1345
BseLI	CCNNNNNNNGG	1 cut(s)	171
BseMI	GCAATG	2 cut(s)	1253, 1359
BseMII	CTCAG	7 cut(s)	120, 633, 923, 1170, 1200, 1256, 1437
BseNI	ACTGG	3 cut(s)	826, 1169, 1228
BseSI	GKGCMC	1 cut(s)	825
BseXI	GCAGC	3 cut(s)	34, 394, 782
BseYI	CCCAGC	2 cut(s)	236, 1053
BshFI	GGCC	3 cut(s)	308, 747, 1168
BshTI	ACCGGT	1 cut(s)	446
BsiHKAI	GWGCWC	3 cut(s)	825, 1243, 1438
BsiSI	CCGG	2 cut(s)	447, 749
BslFI	GGGAC	2 cut(s)	1050, 1441
BslI	CCNNNNNNNGG	1 cut(s)	171
BsmAI	GTCTC	2 cut(s)	371, 1177
BsmFI	GGGAC	2 cut(s)	1050, 1441
BsnI	GGCC	3 cut(s)	308, 747, 1168
Bsp1286I	GDGCHC	4 cut(s)	825, 1060, 1243, 1438
Bsp1407I	TGTACA	1 cut(s)	759
Bsp143I	GATC	2 cut(s)	703, 1158
Bsp1720I	GCTNAGC	2 cut(s)	1179, 1242
BspACI	CCGC	2 cut(s)	945, 1410
BspANI	GGCC	3 cut(s)	308, 747, 1168
BspCNI	CTCAG	7 cut(s)	119, 634, 922, 1171, 1201, 1255, 1438
BspLI	GGNNCC	3 cut(s)	445, 1059, 1457
BspMI	ACCTGC	1 cut(s)	79
BspOI	GCTAGC	1 cut(s)	945
BsrDI	GCAATG	2 cut(s)	1253, 1359
BsrFI	RCCGGY	1 cut(s)	446
BsrGI	TGTACA	1 cut(s)	759
BsrI	ACTGG	3 cut(s)	826, 1169, 1228
BssAI	RCCGGY	1 cut(s)	446
BssECI	CCNNGG	2 cut(s)	389, 633
BssMI	GATC	2 cut(s)	703, 1158
BssT1I	CCWWGG	2 cut(s)	389, 633
Bst4CI	ACNGT	4 cut(s)	356, 759, 865, 1258
Bst6I	CTCTTC	3 cut(s)	972, 987, 1305
BstAUI	TGTACA	1 cut(s)	759
BstC8I	GCNNGC	2 cut(s)	943, 947
BstDEI	CTNAG	9 cut(s)	106, 642, 849, 909, 1179, 1209, 1217, 1242, 1446
BstF5I	GGATG	2 cut(s)	800, 1345
BstKTI	GATC	2 cut(s)	706, 1161
BstMAI	GTCTC	2 cut(s)	371, 1177
BstMBI	GATC	2 cut(s)	703, 1158
BstMWI	GCNNNNNNNGC	2 cut(s)	1238, 1394
BstNSI	RCATGY	1 cut(s)	879
BstSCI	CCNGG	1 cut(s)	747
BstSFI	CTRYAG	1 cut(s)	709
BstSLI	GKGCMC	1 cut(s)	825
BstV1I	GCAGC	3 cut(s)	34, 394, 782
BstV2I	GAAGAC	1 cut(s)	737
BsuRI	GGCC	3 cut(s)	308, 747, 1168
BtsCI	GGATG	2 cut(s)	800, 1345
BtsI	GCAGTG	1 cut(s)	933
BtsIMutI	CAGTG	4 cut(s)	755, 833, 907, 933
BveI	ACCTGC	1 cut(s)	79
Cac8I	GCNNGC	2 cut(s)	943, 947
CaiI	CAGNNNCTG	1 cut(s)	916
Cfr10I	RCCGGY	1 cut(s)	446
Cfr13I	GGNCC	3 cut(s)	346, 746, 1455
CseI	GACGC	2 cut(s)	87, 647
Csp6I	GTAC	3 cut(s)	68, 760, 1254
CspAI	ACCGGT	1 cut(s)	446
CviAII	CATG	6 cut(s)	440, 735, 799, 876, 1082, 1164
CviQI	GTAC	3 cut(s)	68, 760, 1254
DdeI	CTNAG	9 cut(s)	106, 642, 849, 909, 1179, 1209, 1217, 1242, 1446
DpnI	GATC	2 cut(s)	705, 1160
DpnII	GATC	2 cut(s)	703, 1158
DraI	TTTAAA	2 cut(s)	588, 625
EaeI	YGGCCR	1 cut(s)	1166
Eam1104I	CTCTTC	3 cut(s)	972, 987, 1305
EarI	CTCTTC	3 cut(s)	972, 987, 1305
Eco130I	CCWWGG	2 cut(s)	389, 633
Eco24I	GRGCYC	1 cut(s)	1060
Eco47I	GGWCC	2 cut(s)	346, 1455
Eco57I	CTGAAG	2 cut(s)	236, 1026
EcoO109I	RGGNCCY	1 cut(s)	1455
EcoRI	GAATTC	2 cut(s)	420, 608
EcoT14I	CCWWGG	2 cut(s)	389, 633
EcoT22I	ATGCAT	2 cut(s)	800, 877
EcoT38I	GRGCYC	1 cut(s)	1060
ErhI	CCWWGG	2 cut(s)	389, 633
FaeI	CATG	6 cut(s)	443, 738, 802, 879, 1085, 1167
FaqI	GGGAC	2 cut(s)	1050, 1441
FatI	CATG	6 cut(s)	439, 734, 798, 875, 1081, 1163
FauI	CCCGC	1 cut(s)	938
FbaI	TGATCA	1 cut(s)	1158
Fnu4HI	GCNGC	3 cut(s)	23, 408, 771
FokI	GGATG	2 cut(s)	807, 1352
FriOI	GRGCYC	1 cut(s)	1060
Fsp4HI	GCNGC	3 cut(s)	23, 408, 771
FspBI	CTAG	4 cut(s)	935, 942, 1287, 1376
GluI	GCNGC	3 cut(s)	23, 408, 771
GsaI	CCCAGC	2 cut(s)	240, 1057
HaeIII	GGCC	3 cut(s)	308, 747, 1168
HapII	CCGG	2 cut(s)	447, 749
HgaI	GACGC	2 cut(s)	87, 647
Hin1II	CATG	6 cut(s)	443, 738, 802, 879, 1085, 1167
HincII	GTYRAC	1 cut(s)	670
HindII	GTYRAC	1 cut(s)	670
HinfI	GANTC	7 cut(s)	515, 521, 905, 1038, 1072, 1105, 1321
HpaI	GTTAAC	1 cut(s)	670
HpaII	CCGG	2 cut(s)	447, 749
HphI	GGTGA	2 cut(s)	604, 1216
Hpy166II	GTNNAC	2 cut(s)	670, 823
Hpy188I	TCNGA	3 cut(s)	514, 520, 1447
Hpy188III	TCNNGA	4 cut(s)	214, 917, 1076, 1467
Hpy8I	GTNNAC	2 cut(s)	670, 823
HpyAV	CCTTC	6 cut(s)	165, 440, 1001, 1022, 1127, 1400
HpyCH4III	ACNGT	4 cut(s)	356, 759, 865, 1258
HpyCH4V	TGCA	9 cut(s)	117, 143, 410, 701, 798, 823, 875, 926, 1262
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1238, 1394
HpyF3I	CTNAG	9 cut(s)	106, 642, 849, 909, 1179, 1209, 1217, 1242, 1446
Hsp92II	CATG	6 cut(s)	443, 738, 802, 879, 1085, 1167
Ksp22I	TGATCA	1 cut(s)	1158
KspAI	GTTAAC	1 cut(s)	670
Kzo9I	GATC	2 cut(s)	703, 1158
LmnI	GCTCC	3 cut(s)	289, 651, 1063
Lsp1109I	GCAGC	3 cut(s)	34, 394, 782
LweI	GCATC	2 cut(s)	367, 785
MaeI	CTAG	4 cut(s)	935, 942, 1287, 1376
MaeIII	GTNAC	4 cut(s)	310, 753, 1102, 1204
MalI	GATC	2 cut(s)	705, 1160
MboI	GATC	2 cut(s)	703, 1158
MhlI	GDGCHC	4 cut(s)	825, 1060, 1243, 1438
MlsI	TGGCCA	1 cut(s)	1168
MluNI	TGGCCA	1 cut(s)	1168
MlyI	GAGTC	4 cut(s)	530, 1032, 1099, 1330
MmeI	TCCRAC	1 cut(s)	1072
Mox20I	TGGCCA	1 cut(s)	1168
Mph1103I	ATGCAT	2 cut(s)	800, 877
MscI	TGGCCA	1 cut(s)	1168
MseI	TTAA	6 cut(s)	587, 624, 669, 843, 1191, 1430
MslI	CAYNNNNRTG	1 cut(s)	250
Msp20I	TGGCCA	1 cut(s)	1168
MspI	CCGG	2 cut(s)	447, 749
MspR9I	CCNGG	1 cut(s)	749
MwoI	GCNNNNNNNGC	2 cut(s)	1238, 1394
NciI	CCSGG	1 cut(s)	749
NdeII	GATC	2 cut(s)	703, 1158
NheI	GCTAGC	1 cut(s)	941
NlaIII	CATG	6 cut(s)	443, 738, 802, 879, 1085, 1167
NlaIV	GGNNCC	3 cut(s)	445, 1059, 1457
NmeAIII	GCCGAG	1 cut(s)	1154
NmuCI	GTSAC	4 cut(s)	310, 753, 1102, 1204
NsiI	ATGCAT	2 cut(s)	800, 877
NspI	RCATGY	1 cut(s)	879
PfeI	GAWTC	3 cut(s)	515, 905, 1072
PinAI	ACCGGT	1 cut(s)	446
PkrI	GCNGC	3 cut(s)	24, 409, 772
PleI	GAGTC	4 cut(s)	529, 1032, 1099, 1329
PpsI	GAGTC	4 cut(s)	529, 1032, 1099, 1329
PpuMI	RGGWCCY	1 cut(s)	1455
PsiI	TTATAA	1 cut(s)	1046
Psp5II	RGGWCCY	1 cut(s)	1455
PspFI	CCCAGC	2 cut(s)	236, 1053
PspN4I	GGNNCC	3 cut(s)	445, 1059, 1457
PspPI	GGNCC	3 cut(s)	346, 746, 1455
PspPPI	RGGWCCY	1 cut(s)	1455
PstNI	CAGNNNCTG	1 cut(s)	916
RsaI	GTAC	3 cut(s)	69, 761, 1255
RsaNI	GTAC	3 cut(s)	68, 760, 1254
RseI	CAYNNNNRTG	1 cut(s)	250
SaqAI	TTAA	6 cut(s)	587, 624, 669, 843, 1191, 1430
SatI	GCNGC	3 cut(s)	23, 408, 771
Sau3AI	GATC	2 cut(s)	703, 1158
Sau96I	GGNCC	3 cut(s)	346, 746, 1455
SchI	GAGTC	4 cut(s)	530, 1032, 1099, 1330
ScrFI	CCNGG	1 cut(s)	749
SduI	GDGCHC	4 cut(s)	825, 1060, 1243, 1438
SfaNI	GCATC	2 cut(s)	367, 785
SfcI	CTRYAG	1 cut(s)	709
SinI	GGWCC	2 cut(s)	346, 1455
SmiMI	CAYNNNNRTG	1 cut(s)	250
SmlI	CTYRAG	3 cut(s)	54, 332, 1076
SmoI	CTYRAG	3 cut(s)	54, 332, 1076
SsiI	CCGC	2 cut(s)	945, 1410
SspI	AATATT	2 cut(s)	180, 598
SspMI	CTAG	4 cut(s)	935, 942, 1287, 1376
StyD4I	CCNGG	1 cut(s)	747
StyI	CCWWGG	2 cut(s)	389, 633
TaaI	ACNGT	4 cut(s)	356, 759, 865, 1258
TaqI	TCGA	1 cut(s)	201
TatI	WGTACW	1 cut(s)	759
TfiI	GAWTC	3 cut(s)	515, 905, 1072
Tru1I	TTAA	6 cut(s)	587, 624, 669, 843, 1191, 1430
Tru9I	TTAA	6 cut(s)	587, 624, 669, 843, 1191, 1430
TscAI	CASTG	4 cut(s)	762, 833, 907, 933
TseFI	GTSAC	4 cut(s)	310, 753, 1102, 1204
TseI	GCWGC	3 cut(s)	22, 407, 770
Tsp45I	GTSAC	4 cut(s)	310, 753, 1102, 1204
TspRI	CASTG	4 cut(s)	762, 833, 907, 933
VneI	GTGCAC	1 cut(s)	821
VpaK11BI	GGWCC	2 cut(s)	346, 1455
XapI	RAATTY	4 cut(s)	296, 413, 420, 608
XceI	RCATGY	1 cut(s)	879
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1161
XspI	CTAG	4 cut(s)	935, 942, 1287, 1376
Zsp2I	ATGCAT	2 cut(s)	800, 877

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.