Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015671.1

Orthogroup ID

OG0003550

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1590

Gene Structure 1590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015671.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

gaattagaggcattaaatgccaagttgtcatctcaactcgcagtttgtcgctgccatcagcaacaggacacgactgaagactcttctgtaagttctgataatttagtcgagaaaagcgggaaatcgagctttcaaagtaagaacaccaccaaggagaaagttaaagggaaattgccaggttacgacacaaggatcatgaatcaccacagcaagagatatgttgctttgaaagtcatgtattttggccaaaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990481

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

84

Amino Acids

9.49

Weight (kDa)

9.39

Isoelectric Point (pI)

41.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34150
fragaria_vesca	FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780
malus_domestica	MD05G1036800.v1.1 MD05G1036900.v1.1
prunus_persica	Prupe.8G045000_v2.0.a1 Prupe.8G045000_v2.0.a1
pyrus_communis	pycom05g02710 pycom05g02720
rosa_chinensis	RchiOBHm_Chr6g0273621
rosa_laevigata	RLG00000013608
rosa_multiflora	Rmu_sc0001419.1_g000001 Rmu_sc0015671.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195210
rosa_rugosa	Rorug06G0076200 Rorug06G0076300 Rorug06G0076400
rosa_samantha	Rh6AG190900 Rh6BG194400 Rh6CG194300 Rh6DG186200
rosa_wichuraiana	Rw6G016710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	117
AclWI	GGATC	1 cut(s)	200
AcoI	YGGCCR	1 cut(s)	244
AcuI	CTGAAG	1 cut(s)	96
AgsI	TTSAA	2 cut(s)	134, 229
AjnI	CCWGG	1 cut(s)	175
AluBI	AGCT	1 cut(s)	129
AluI	AGCT	1 cut(s)	129
AlwI	GGATC	1 cut(s)	200
AoxI	GGCC	1 cut(s)	244
ApeKI	GCWGC	1 cut(s)	51
AsuHPI	GGTGA	1 cut(s)	194
BalI	TGGCCA	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	38
BccI	CCATC	1 cut(s)	63
BciT130I	CCWGG	1 cut(s)	177
BisI	GCNGC	1 cut(s)	52
BlsI	GCNGC	1 cut(s)	53
Bme1390I	CCNGG	1 cut(s)	177
BmrFI	CCNGG	1 cut(s)	177
BpiI	GAAGAC	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	150
BseXI	GCAGC	1 cut(s)	38
BshFI	GGCC	1 cut(s)	246
BsnI	GGCC	1 cut(s)	246
Bsp143I	GATC	1 cut(s)	192
BspACI	CCGC	1 cut(s)	117
BspANI	GGCC	1 cut(s)	246
BspHI	TCATGA	1 cut(s)	195
BspPI	GGATC	1 cut(s)	200
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	150
Bst2UI	CCWGG	1 cut(s)	177
Bst6I	CTCTTC	1 cut(s)	88
BstAPI	GCANNNNNTGC	1 cut(s)	17
BstKTI	GATC	1 cut(s)	195
BstMBI	GATC	1 cut(s)	192
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstNI	CCWGG	1 cut(s)	177
BstSCI	CCNGG	1 cut(s)	175
BstV1I	GCAGC	1 cut(s)	38
BstV2I	GAAGAC	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	246
CciI	TCATGA	1 cut(s)	195
CviAII	CATG	2 cut(s)	196, 235
CviJI	RGCY	2 cut(s)	129, 246
CviKI_1	RGCY	2 cut(s)	129, 246
DpnI	GATC	1 cut(s)	194
DpnII	GATC	1 cut(s)	192
EaeI	YGGCCR	1 cut(s)	244
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	150
Eco57I	CTGAAG	1 cut(s)	96
EcoRII	CCWGG	1 cut(s)	175
EcoT14I	CCWWGG	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	2 cut(s)	199, 238
FaiI	YATR	3 cut(s)	197, 219, 236
FatI	CATG	2 cut(s)	195, 234
FauI	CCCGC	1 cut(s)	110
Fnu4HI	GCNGC	1 cut(s)	52
Fsp4HI	GCNGC	1 cut(s)	52
GluI	GCNGC	1 cut(s)	52
HaeIII	GGCC	1 cut(s)	246
Hin1II	CATG	2 cut(s)	199, 238
HinfI	GANTC	2 cut(s)	80, 199
HphI	GGTGA	1 cut(s)	194
Hpy188I	TCNGA	1 cut(s)	97
Hpy188III	TCNNGA	2 cut(s)	109, 196
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
Hsp92II	CATG	2 cut(s)	199, 238
Kzo9I	GATC	1 cut(s)	192
LpnPI	CCDG	3 cut(s)	50, 162, 189
Lsp1109I	GCAGC	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	1 cut(s)	194
MboI	GATC	1 cut(s)	192
MboII	GAAGA	2 cut(s)	75, 89
MlsI	TGGCCA	1 cut(s)	246
MluCI	AATT	3 cut(s)	2, 100, 170
MluNI	TGGCCA	1 cut(s)	246
MlyI	GAGTC	1 cut(s)	74
Mox20I	TGGCCA	1 cut(s)	246
MscI	TGGCCA	1 cut(s)	246
MseI	TTAA	2 cut(s)	14, 162
Msp20I	TGGCCA	1 cut(s)	246
MspR9I	CCNGG	1 cut(s)	177
MvaI	CCWGG	1 cut(s)	177
MwoI	GCNNNNNNNGC	1 cut(s)	17
NdeII	GATC	1 cut(s)	192
NlaIII	CATG	2 cut(s)	199, 238
PagI	TCATGA	1 cut(s)	195
PfeI	GAWTC	1 cut(s)	199
PkrI	GCNGC	1 cut(s)	53
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
Psp6I	CCWGG	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	175
SaqAI	TTAA	2 cut(s)	14, 162
SatI	GCNGC	1 cut(s)	52
Sau3AI	GATC	1 cut(s)	192
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	1 cut(s)	177
SetI	ASST	3 cut(s)	131, 181, 254
Sse9I	AATT	3 cut(s)	2, 100, 170
SsiI	CCGC	1 cut(s)	117
StyD4I	CCNGG	1 cut(s)	175
StyI	CCWWGG	1 cut(s)	150
TaqI	TCGA	2 cut(s)	108, 125
TasI	AATT	3 cut(s)	2, 100, 170
TfiI	GAWTC	1 cut(s)	199
Tru1I	TTAA	2 cut(s)	14, 162
Tru9I	TTAA	2 cut(s)	14, 162
TseI	GCWGC	1 cut(s)	51
TspDTI	ATGAA	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.