Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003550

Physical Location & Seq

Genomic Coordinates Forward (+)

4682798 .. 4696966

Gene Structure 14169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G045000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGTCTATGGAAGTCACCAATACAAACCTAATCACCGACCTACAGTCCCTGGTCGACTCCCTCCGGCACCGAGTTCAGGAACTAGAGGCTGAGAATGCCAAGTTTTCATCTCAACTTGCAAACTGTCGCTGTCATGAGAAAGAGGACAAGCGTGATAGTTCTGCTGTAAGTTGTGATAGTTCACTGGAGACAAGCAGGAAATCAAACTCTGGAAGTAAGAAAACCACCAAGGAGATAGTAAAAGAGAAAGTGCCAGGTTATGACACAAGGATCATGAATCACCACTGCAAAAGATATGTTGCTCTGAAAGTCATGTATTTTGGGCGGAGGTTTTATGGTTTTGCTGCAGAGGCACAAATGGATCCAACTATTGAGTCTGAAATTTTTAAAGCTCTTGAAAAGACAAGGCTTTTAGTTGGTGACAAGAAGGAATCACATTACTCCAGATGTGGTAGGACAGACAAGGGAGTATCTGCTGTTGGGCAAGTGATTGCTCTCTATTTACGATCAAACCTCAAGGAAACGTGTGAGAAAAATGAAGATTCGAGAAAAATGGTTTTCAAAGAGCAATATGAAGGCGAAATCGATTATGTGAGGGTGTTGAATCGAGCCCTTCCGGATGATATTCGAGTTTTTGGCTGGTGTCCTGTTCCATTGGGTTTCAATGCGAGGTTTAGCTGTTTGGGCAGGGAGTATTATTATTTATTTTGGGGAGAAAATCTGAATCTCTTGGCTATGGAGAGTGCTGGTAGGAAATTTGTTGGCGAGCATGACTTCAGAAACTTCTGTAAAATGGATGCACTAAATGTACACAACTATAGGCGGAAAGTCACTTCATTTGCAATCTCTCCTTGTGATGTGAGGTTTGATGAGAACCAGCTTTGGGCAATCAAAATTAAAGGTAGTGCTTTCCTCTGGCACCAAGTCCGATGCATGGTTGCTGTACTATTCTTGATTGGCCAAGGTCATGAATCTCCTGATGTAATAGATGCGTTACTGGATACTGACAGAATCCCCAGAAAACCTCAATACAGCATGGCCCCGGAAATCCCATTGGTTCTTCAGTCTTGTGAATTTGAGGGTCTCAATTTCACTTGTTCGTCAGATTCTGGGCAAGCTTTGCGTATGCACTTGGCAAATGAATGTCAAAATTATCATCTCGAAGCTGCAATCTTCCACGAGGCTCTGCAGAGCTGTTCGCCAATAGAAAAAGATCAGAGATCCTTGGATAATGGAACAGTCAAGAAAAAATCTTCCCATGTCCCTCTCATGTCACGGCCAACTGAGCCATCGTATGAAGAGAGACGTGCCAAATTAAACACACGACGTAAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990481

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

446

Amino Acids

51.1

Weight (kDa)

8.39

Isoelectric Point (pI)

54.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34150
fragaria_vesca	FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780
malus_domestica	MD05G1036800.v1.1 MD05G1036900.v1.1
prunus_persica	Prupe.8G045000_v2.0.a1 Prupe.8G045000_v2.0.a1
pyrus_communis	pycom05g02710 pycom05g02720
rosa_chinensis	RchiOBHm_Chr6g0273621
rosa_laevigata	RLG00000013608
rosa_multiflora	Rmu_sc0001419.1_g000001 Rmu_sc0015671.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195210
rosa_rugosa	Rorug06G0076200 Rorug06G0076300 Rorug06G0076400
rosa_samantha	Rh6AG190900 Rh6BG194400 Rh6CG194300 Rh6DG186200
rosa_wichuraiana	Rw6G016710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	66, 918
AccI	GTMKAC	1 cut(s)	54
AccIII	TCCGGA	1 cut(s)	616
AciI	CCGC	2 cut(s)	325, 823
AclWI	GGATC	4 cut(s)	278, 356, 369, 1215
AcoI	YGGCCR	2 cut(s)	958, 1277
AcsI	RAATTY	3 cut(s)	381, 755, 1073
AcuI	CTGAAG	2 cut(s)	760, 1046
AfaI	GTAC	2 cut(s)	810, 945
AfiI	CCNNNNNNNGG	3 cut(s)	76, 883, 934
AflIII	ACRYGT	1 cut(s)	524
AgsI	TTSAA	4 cut(s)	398, 562, 604, 664
AhdI	GACNNNNNGTC	1 cut(s)	43
AjiI	CACGTC	1 cut(s)	1307
AjnI	CCWGG	2 cut(s)	48, 253
AluBI	AGCT	6 cut(s)	392, 678, 880, 1118, 1166, 1194
AluI	AGCT	6 cut(s)	392, 678, 880, 1118, 1166, 1194
Alw26I	GTCTC	3 cut(s)	182, 1088, 1297
AlwI	GGATC	4 cut(s)	278, 356, 369, 1215
AlwNI	CAGNNNCTG	2 cut(s)	49, 1109
Aor13HI	TCCGGA	1 cut(s)	616
AoxI	GGCC	3 cut(s)	958, 1038, 1277
ApeKI	GCWGC	2 cut(s)	344, 1166
ApoI	RAATTY	3 cut(s)	381, 755, 1073
AspS9I	GGNCC	1 cut(s)	1039
AsuC2I	CCSGG	1 cut(s)	1043
AsuHPI	GGTGA	4 cut(s)	7, 25, 272, 431
BalI	TGGCCA	1 cut(s)	960
BamHI	GGATCC	1 cut(s)	361
BanI	GGYRCC	2 cut(s)	66, 918
BanII	GRGCYC	1 cut(s)	613
BauI	CACGAG	1 cut(s)	1178
BbvI	GCAGC	2 cut(s)	331, 1153
BccI	CCATC	1 cut(s)	1297
BceAI	ACGGC	1 cut(s)	1292
BciT130I	CCWGG	2 cut(s)	50, 255
BciVI	GTATCC	1 cut(s)	994
BcnI	CCSGG	1 cut(s)	1043
BcoDI	GTCTC	3 cut(s)	182, 1088, 1297
BfaI	CTAG	1 cut(s)	83
BfmI	CTRYAG	4 cut(s)	41, 345, 817, 1187
BfuI	GTATCC	1 cut(s)	994
BisI	GCNGC	2 cut(s)	345, 1167
BlsI	GCNGC	2 cut(s)	346, 1168
Bme1390I	CCNGG	3 cut(s)	50, 255, 1043
BmeRI	GACNNNNNGTC	1 cut(s)	43
BmgBI	CACGTC	1 cut(s)	1307
BmgT120I	GGNCC	1 cut(s)	1039
BmiI	GGNNCC	4 cut(s)	68, 363, 920, 1041
BmrFI	CCNGG	3 cut(s)	50, 255, 1043
BmsI	GCATC	3 cut(s)	787, 920, 979
BpmI	CTGGAG	2 cut(s)	206, 427
BpuEI	CTTGAG	1 cut(s)	500
BpuMI	CCSGG	1 cut(s)	1043
Bsa29I	ATCGAT	1 cut(s)	585
BsaI	GGTCTC	1 cut(s)	1088
BsaJI	CCNNGG	5 cut(s)	48, 228, 961, 1041, 1224
BsaWI	WCCGGW	1 cut(s)	616
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 883, 934
Bse1I	ACTGG	2 cut(s)	189, 1002
BseAI	TCCGGA	1 cut(s)	616
BseBI	CCWGG	2 cut(s)	50, 255
BseCI	ATCGAT	1 cut(s)	585
BseDI	CCNNGG	5 cut(s)	48, 228, 961, 1041, 1224
BseGI	GGATG	2 cut(s)	625, 802
BseLI	CCNNNNNNNGG	3 cut(s)	76, 883, 934
BseMII	CTCAG	2 cut(s)	81, 1275
BseNI	ACTGG	2 cut(s)	189, 1002
BseXI	GCAGC	2 cut(s)	331, 1153
BshFI	GGCC	3 cut(s)	960, 1040, 1279
BshNI	GGYRCC	2 cut(s)	66, 918
BshVI	ATCGAT	1 cut(s)	585
BsiSI	CCGG	3 cut(s)	64, 617, 1043
BslFI	GGGAC	2 cut(s)	31, 1247
BslI	CCNNNNNNNGG	3 cut(s)	76, 883, 934
BsmAI	GTCTC	3 cut(s)	182, 1088, 1297
BsmBI	CGTCTC	1 cut(s)	1297
BsmFI	GGGAC	2 cut(s)	31, 1247
BsmI	GAATGC	1 cut(s)	100
BsnI	GGCC	3 cut(s)	960, 1040, 1279
Bso31I	GGTCTC	1 cut(s)	1088
Bsp1286I	GDGCHC	1 cut(s)	613
Bsp13I	TCCGGA	1 cut(s)	616
Bsp1407I	TGTACA	1 cut(s)	808
Bsp143I	GATC	5 cut(s)	270, 361, 506, 1213, 1220
BspACI	CCGC	2 cut(s)	325, 823
BspANI	GGCC	3 cut(s)	960, 1040, 1279
BspCNI	CTCAG	2 cut(s)	82, 1276
BspDI	ATCGAT	1 cut(s)	585
BspEI	TCCGGA	1 cut(s)	616
BspHI	TCATGA	3 cut(s)	133, 273, 967
BspLI	GGNNCC	4 cut(s)	68, 363, 920, 1041
BspMAI	CTGCAG	2 cut(s)	349, 1191
BspPI	GGATC	4 cut(s)	278, 356, 369, 1215
BspT107I	GGYRCC	2 cut(s)	66, 918
BspTNI	GGTCTC	1 cut(s)	1088
BsrGI	TGTACA	1 cut(s)	808
BsrI	ACTGG	2 cut(s)	189, 1002
BssECI	CCNNGG	5 cut(s)	48, 228, 961, 1041, 1224
BssMI	GATC	5 cut(s)	270, 361, 506, 1213, 1220
BssSI	CACGAG	1 cut(s)	1178
BssT1I	CCWWGG	3 cut(s)	228, 961, 1224
Bst2BI	CACGAG	1 cut(s)	1178
Bst2UI	CCWGG	2 cut(s)	50, 255
Bst4CI	ACNGT	3 cut(s)	45, 125, 1240
Bst6I	CTCTTC	1 cut(s)	1293
BstAPI	GCANNNNNTGC	1 cut(s)	1120
BstAUI	TGTACA	1 cut(s)	808
BstC8I	GCNNGC	2 cut(s)	767, 1116
BstDEI	CTNAG	2 cut(s)	90, 1284
BstF5I	GGATG	2 cut(s)	625, 802
BstKTI	GATC	5 cut(s)	273, 364, 509, 1216, 1223
BstMAI	GTCTC	3 cut(s)	182, 1088, 1297
BstMBI	GATC	5 cut(s)	270, 361, 506, 1213, 1220
BstMWI	GCNNNNNNNGC	5 cut(s)	95, 350, 684, 1120, 1285
BstNI	CCWGG	2 cut(s)	50, 255
BstSCI	CCNGG	3 cut(s)	48, 253, 1041
BstSFI	CTRYAG	4 cut(s)	41, 345, 817, 1187
BstV1I	GCAGC	2 cut(s)	331, 1153
BstX2I	RGATCY	2 cut(s)	361, 1220
BstYI	RGATCY	2 cut(s)	361, 1220
Bsu15I	ATCGAT	1 cut(s)	585
BsuI	GTATCC	1 cut(s)	994
BsuRI	GGCC	3 cut(s)	960, 1040, 1279
BsuTUI	ATCGAT	1 cut(s)	585
BtrI	CACGTC	1 cut(s)	1307
BtsCI	GGATG	2 cut(s)	625, 802
BtsI	GCAGTG	1 cut(s)	283
BtsIMutI	CAGTG	2 cut(s)	182, 283
Cac8I	GCNNGC	2 cut(s)	767, 1116
CaiI	CAGNNNCTG	2 cut(s)	49, 1109
CciI	TCATGA	3 cut(s)	133, 273, 967
Cfr13I	GGNCC	1 cut(s)	1039
ClaI	ATCGAT	1 cut(s)	585
Csp6I	GTAC	2 cut(s)	809, 944
CviAII	CATG	9 cut(s)	134, 274, 313, 770, 934, 968, 1036, 1259, 1270
CviQI	GTAC	2 cut(s)	809, 944
DdeI	CTNAG	2 cut(s)	90, 1284
DpnI	GATC	5 cut(s)	272, 363, 508, 1215, 1222
DpnII	GATC	5 cut(s)	270, 361, 506, 1213, 1220
DraI	TTTAAA	1 cut(s)	388
DriI	GACNNNNNGTC	1 cut(s)	43
EaeI	YGGCCR	2 cut(s)	958, 1277
Eam1104I	CTCTTC	1 cut(s)	1293
Eam1105I	GACNNNNNGTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	1293
EciI	GGCGGA	2 cut(s)	340, 838
Eco130I	CCWWGG	3 cut(s)	228, 961, 1224
Eco24I	GRGCYC	1 cut(s)	613
Eco31I	GGTCTC	1 cut(s)	1088
Eco57I	CTGAAG	2 cut(s)	760, 1046
EcoRII	CCWGG	2 cut(s)	48, 253
EcoT14I	CCWWGG	3 cut(s)	228, 961, 1224
EcoT22I	ATGCAT	1 cut(s)	935
EcoT38I	GRGCYC	1 cut(s)	613
ErhI	CCWWGG	3 cut(s)	228, 961, 1224
Esp3I	CGTCTC	1 cut(s)	1297
FaeI	CATG	9 cut(s)	137, 277, 316, 773, 937, 971, 1039, 1262, 1273
FaqI	GGGAC	2 cut(s)	31, 1247
FatI	CATG	9 cut(s)	133, 273, 312, 769, 933, 967, 1035, 1258, 1269
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	2 cut(s)	345, 1167
FokI	GGATG	2 cut(s)	632, 809
FriOI	GRGCYC	1 cut(s)	613
Fsp4HI	GCNGC	2 cut(s)	345, 1167
FspBI	CTAG	1 cut(s)	83
GluI	GCNGC	2 cut(s)	345, 1167
GsuI	CTGGAG	2 cut(s)	206, 427
HaeIII	GGCC	3 cut(s)	960, 1040, 1279
HapII	CCGG	3 cut(s)	64, 617, 1043
Hin1II	CATG	9 cut(s)	137, 277, 316, 773, 937, 971, 1039, 1262, 1273
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HindIII	AAGCTT	1 cut(s)	1116
HpaII	CCGG	3 cut(s)	64, 617, 1043
HphI	GGTGA	4 cut(s)	7, 25, 272, 431
Hpy166II	GTNNAC	3 cut(s)	55, 182, 811
Hpy188I	TCNGA	7 cut(s)	306, 379, 723, 779, 929, 1105, 1218
Hpy8I	GTNNAC	3 cut(s)	55, 182, 811
Hpy99I	CGWCG	1 cut(s)	1329
HpyAV	CCTTC	3 cut(s)	421, 569, 623
HpyCH4III	ACNGT	3 cut(s)	45, 125, 1240
HpyCH4IV	ACGT	3 cut(s)	524, 1306, 1327
HpyCH4V	TGCA	9 cut(s)	119, 288, 347, 800, 842, 933, 1129, 1169, 1189
HpyF10VI	GCNNNNNNNGC	5 cut(s)	95, 350, 684, 1120, 1285
HpyF3I	CTNAG	2 cut(s)	90, 1284
HpySE526I	ACGT	3 cut(s)	524, 1306, 1327
Hsp92II	CATG	9 cut(s)	137, 277, 316, 773, 937, 971, 1039, 1262, 1273
Kpn2I	TCCGGA	1 cut(s)	616
Kzo9I	GATC	5 cut(s)	270, 361, 506, 1213, 1220
Lsp1109I	GCAGC	2 cut(s)	331, 1153
LweI	GCATC	3 cut(s)	787, 920, 979
MaeI	CTAG	1 cut(s)	83
MaeII	ACGT	3 cut(s)	524, 1306, 1327
MaeIII	GTNAC	5 cut(s)	13, 419, 829, 993, 1272
MalI	GATC	5 cut(s)	272, 363, 508, 1215, 1222
MboI	GATC	5 cut(s)	270, 361, 506, 1213, 1220
MboII	GAAGA	5 cut(s)	551, 1052, 1165, 1245, 1310
MflI	RGATCY	2 cut(s)	361, 1220
MhlI	GDGCHC	1 cut(s)	613
MlsI	TGGCCA	1 cut(s)	960
MluCI	AATT	7 cut(s)	381, 755, 894, 1073, 1087, 1150, 1313
MluNI	TGGCCA	1 cut(s)	960
MlyI	GAGTC	2 cut(s)	50, 383
MmeI	TCCRAC	1 cut(s)	389
Mox20I	TGGCCA	1 cut(s)	960
Mph1103I	ATGCAT	1 cut(s)	935
MroI	TCCGGA	1 cut(s)	616
MscI	TGGCCA	1 cut(s)	960
MseI	TTAA	3 cut(s)	387, 897, 1316
Msp20I	TGGCCA	1 cut(s)	960
MspI	CCGG	3 cut(s)	64, 617, 1043
MspR9I	CCNGG	3 cut(s)	50, 255, 1043
Mva1269I	GAATGC	1 cut(s)	100
MvaI	CCWGG	2 cut(s)	50, 255
MwoI	GCNNNNNNNGC	5 cut(s)	95, 350, 684, 1120, 1285
NciI	CCSGG	1 cut(s)	1043
NdeII	GATC	5 cut(s)	270, 361, 506, 1213, 1220
NlaIII	CATG	9 cut(s)	137, 277, 316, 773, 937, 971, 1039, 1262, 1273
NlaIV	GGNNCC	4 cut(s)	68, 363, 920, 1041
NmuCI	GTSAC	4 cut(s)	13, 419, 829, 1272
NsiI	ATGCAT	1 cut(s)	935
PagI	TCATGA	3 cut(s)	133, 273, 967
PctI	GAATGC	1 cut(s)	100
PfeI	GAWTC	8 cut(s)	277, 431, 542, 604, 724, 971, 1011, 1106
PkrI	GCNGC	2 cut(s)	346, 1168
PleI	GAGTC	2 cut(s)	50, 382
PpsI	GAGTC	2 cut(s)	50, 382
Psp6I	CCWGG	2 cut(s)	48, 253
PspGI	CCWGG	2 cut(s)	48, 253
PspN4I	GGNNCC	4 cut(s)	68, 363, 920, 1041
PspPI	GGNCC	1 cut(s)	1039
PstI	CTGCAG	2 cut(s)	349, 1191
PstNI	CAGNNNCTG	2 cut(s)	49, 1109
PsuI	RGATCY	2 cut(s)	361, 1220
RsaI	GTAC	2 cut(s)	810, 945
RsaNI	GTAC	2 cut(s)	809, 944
SalI	GTCGAC	1 cut(s)	53
SaqAI	TTAA	3 cut(s)	387, 897, 1316
SatI	GCNGC	2 cut(s)	345, 1167
Sau3AI	GATC	5 cut(s)	270, 361, 506, 1213, 1220
Sau96I	GGNCC	1 cut(s)	1039
SchI	GAGTC	2 cut(s)	50, 383
ScrFI	CCNGG	3 cut(s)	50, 255, 1043
SduI	GDGCHC	1 cut(s)	613
SfaNI	GCATC	3 cut(s)	787, 920, 979
SfcI	CTRYAG	4 cut(s)	41, 345, 817, 1187
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
Sse9I	AATT	7 cut(s)	381, 755, 894, 1073, 1087, 1150, 1313
SsiI	CCGC	2 cut(s)	325, 823
SspMI	CTAG	1 cut(s)	83
StyD4I	CCNGG	3 cut(s)	48, 253, 1041
StyI	CCWWGG	3 cut(s)	228, 961, 1224
TaaI	ACNGT	3 cut(s)	45, 125, 1240
TaiI	ACGT	3 cut(s)	527, 1309, 1330
TaqI	TCGA	6 cut(s)	54, 545, 585, 607, 628, 1161
TasI	AATT	7 cut(s)	381, 755, 894, 1073, 1087, 1150, 1313
TatI	WGTACW	2 cut(s)	808, 943
TfiI	GAWTC	8 cut(s)	277, 431, 542, 604, 724, 971, 1011, 1106
Tru1I	TTAA	3 cut(s)	387, 897, 1316
Tru9I	TTAA	3 cut(s)	387, 897, 1316
TscAI	CASTG	2 cut(s)	189, 290
TseFI	GTSAC	4 cut(s)	13, 419, 829, 1272
TseI	GCWGC	2 cut(s)	344, 1166
Tsp45I	GTSAC	4 cut(s)	13, 419, 829, 1272
TspDTI	ATGAA	8 cut(s)	96, 290, 552, 588, 825, 984, 1155, 1311
TspRI	CASTG	2 cut(s)	189, 290
XapI	RAATTY	3 cut(s)	381, 755, 1073
XmiI	GTMKAC	1 cut(s)	54
XspI	CTAG	1 cut(s)	83
Zsp2I	ATGCAT	1 cut(s)	935

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.