Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003550

Physical Location & Seq

Genomic Coordinates Reverse (-)

10129801 .. 10131261

Gene Structure 1461 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0076300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

ATGGAAACTAGAACTGATCACCAGCTTCACATTTTCTTCCTTCCATATATGGCTTCAGGCCACACTTTACCCCTCATGGACATAGCCAAACTATTTGCTTCACGTGGTGTAAAAGCCACCATAATAACCACCACTGTCAATGCAACAATTCTATCCAAACCAATACAAACAAGCAAAAATTTGGGTTTTGAAATTGAACTTCTTGTCTTCAAATTCCCATCTGCTGAAGTAGGGTTGCCTGACGGAATTGAAACCTCTAGCTCAGCAACAACCCAAGAGATGAAGGAAAAGTTTTATAAAGCTATGAATCTGATTGAACCAAAGGTAGAGCAGATTTTAGACCAACATCGCCCTGACTTCCTTATTGCAGACTCTCTGTTTCATTGGGCTACTGATGTTGCTGCCAAGTTTGGGATTCCAAGGCTCATCTTCCATGGAACTGGTTTTTTCCCCATGTGTGCTTCAATGAGTGTGATGGAGTACCAACCTCAGTTGAAGGTTTCATCTGATTCAGAATCTTTTGTCATTCCTAATCTCCCAGATGAGATCACAACGACCAGAAACGAAATACCATCTTTTCTTAAAGCAGATGGCAAGACAGAATTCATCAAGTTGGTAAAAGCATCCAGAGAAGCTGAGAAGAAGAGCTATGGGATTATTGTTAACAGCTTCTATGAACTTGAACCGGATTATGCAGATCACTATAGGAAGGTGTTGGGGAATAAATCATGGCATGTCGGCCCCGTTTCCTTATGCAACAAGGTAGAGAAAGATAAATCAGAGAGGGGAAGGGGAGGCTCTGTTGATGGAGTACACGAGTGCTTGAACTGGCTTAATTCTAAGACACCCAATTCAGTTGTATATATATGTTTTGGAAGCCTGACCAATTTCGGTGATTGTCAGCTCCTAGAAATTGCCTTGGCTCTAGAGGCTTCTCAGCAGCAATTCATTTGGGTTGTGAAGAAAGAAAAGAATGATAAAGAAATGTGGGTGCCTGAAGGGTTTGAGCAGAGAATGGAAGGTAATGGATTGATTGTAAGAGGTTGGGCTCCCCAACTACTCATTCTTGAGCATGAGGCAGTTGGGGCCTTCGTGACTCATTGTGGGTGGAATTCTATCCTTGAAGGTGTCTCCGCTGGGGTGCCAATGATCACGTGGCCAGTGTCTGCAGAGCAGTTTTACAATGAGAAGTTGGTTACTCAGTTACTTGGGATTGGGGTTGCTGTTGGTGCTGAAAAGTGGGCTGCAGTTGAGGATGATAATGTGAAGAGTGAAGCCAGTGTGAAGAGGGAGGCCATAGAGAAGGCTGTGACGGAAATCATGATGGGTGATGAAGCAGAGGGAATGAGAAACAGAGCTAAAGTGCTCCGAGAGATGGCAAGGAGGGCAGTTATAGAAGGCGGTTCATCATTCTCGGATTTAACAGCTCTAGTTGAAGAATTGAGGTCCTTTGGGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990481

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

486

Amino Acids

54.2

Weight (kDa)

5.41

Isoelectric Point (pI)

35.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	275 - 401	7.8e-21	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34150
fragaria_vesca	FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780
malus_domestica	MD05G1036800.v1.1 MD05G1036900.v1.1
prunus_persica	Prupe.8G045000_v2.0.a1 Prupe.8G045000_v2.0.a1
pyrus_communis	pycom05g02710 pycom05g02720
rosa_chinensis	RchiOBHm_Chr6g0273621
rosa_laevigata	RLG00000013608
rosa_multiflora	Rmu_sc0001419.1_g000001 Rmu_sc0015671.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195210
rosa_rugosa	Rorug06G0076200 Rorug06G0076300 Rorug06G0076400
rosa_samantha	Rh6AG190900 Rh6BG194400 Rh6CG194300 Rh6DG186200
rosa_wichuraiana	Rw6G016710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	297
AccB1I	GGYRCC	2 cut(s)	991, 1141
AciI	CCGC	2 cut(s)	1134, 1401
AcoI	YGGCCR	1 cut(s)	1157
AcsI	RAATTY	4 cut(s)	178, 212, 602, 1111
AcuI	CTGAAG	3 cut(s)	39, 246, 1017
AcvI	CACGTG	2 cut(s)	104, 1155
AdeI	CACNNNGTG	1 cut(s)	107
AfaI	GTAC	2 cut(s)	482, 813
AfiI	CCNNNNNNNGG	2 cut(s)	411, 1375
AjuI	GAANNNNNNNTTGG	2 cut(s)	1047, 1079
AluBI	AGCT	9 cut(s)	25, 261, 302, 635, 648, 669, 904, 1358, 1427
AluI	AGCT	9 cut(s)	25, 261, 302, 635, 648, 669, 904, 1358, 1427
Alw21I	GWGCWC	1 cut(s)	1368
Alw26I	GTCTC	1 cut(s)	1135
AlwNI	CAGNNNCTG	1 cut(s)	1166
AoxI	GGCC	5 cut(s)	58, 739, 1086, 1157, 1293
ApeKI	GCWGC	3 cut(s)	401, 940, 1244
ApoI	RAATTY	4 cut(s)	178, 212, 602, 1111
AspS9I	GGNCC	3 cut(s)	740, 1086, 1446
AsuHPI	GGTGA	3 cut(s)	11, 905, 1340
AvaII	GGWCC	1 cut(s)	1446
BalI	TGGCCA	1 cut(s)	1159
BanI	GGYRCC	2 cut(s)	991, 1141
BanII	GRGCYC	1 cut(s)	1051
BauI	CACGAG	1 cut(s)	815
BbrPI	CACGTG	2 cut(s)	104, 1155
BbsI	GAAGAC	1 cut(s)	199
Bbv12I	GWGCWC	1 cut(s)	1368
BbvI	GCAGC	3 cut(s)	388, 952, 1231
BccI	CCATC	7 cut(s)	226, 469, 580, 584, 800, 1318, 1369
BclI	TGATCA	2 cut(s)	16, 1149
BcoDI	GTCTC	1 cut(s)	1135
BfaI	CTAG	5 cut(s)	9, 258, 908, 926, 1430
BfmI	CTRYAG	3 cut(s)	703, 1167, 1245
BisI	GCNGC	3 cut(s)	402, 941, 1245
BlpI	GCTNAGC	1 cut(s)	262
BlsI	GCNGC	3 cut(s)	403, 942, 1246
Bme18I	GGWCC	1 cut(s)	1446
BmgT120I	GGNCC	3 cut(s)	740, 1086, 1446
BmiI	GGNNCC	5 cut(s)	742, 993, 1050, 1087, 1143
BmsI	GCATC	1 cut(s)	632
BpiI	GAAGAC	1 cut(s)	199
Bpu1102I	GCTNAGC	1 cut(s)	262
BpuEI	CTTGAG	1 cut(s)	1088
BsaAI	YACGTR	2 cut(s)	104, 1155
BsaJI	CCNNGG	3 cut(s)	419, 433, 918
BsaWI	WCCGGW	1 cut(s)	685
BsaXI	ACNNNNNCTCC	2 cut(s)	786, 816
Bsc4I	CCNNNNNNNGG	2 cut(s)	411, 1375
Bse1I	ACTGG	4 cut(s)	445, 833, 1160, 1278
BseDI	CCNNGG	3 cut(s)	419, 433, 918
BseGI	GGATG	2 cut(s)	623, 1261
BseLI	CCNNNNNNNGG	2 cut(s)	411, 1375
BseMII	CTCAG	5 cut(s)	276, 503, 627, 950, 1214
BseNI	ACTGG	4 cut(s)	445, 833, 1160, 1278
BseXI	GCAGC	3 cut(s)	388, 952, 1231
BseYI	CCCAGC	1 cut(s)	1136
BshFI	GGCC	5 cut(s)	60, 741, 1088, 1159, 1295
BshNI	GGYRCC	2 cut(s)	991, 1141
BsiHKAI	GWGCWC	1 cut(s)	1368
BsiSI	CCGG	1 cut(s)	686
BslI	CCNNNNNNNGG	2 cut(s)	411, 1375
BsmAI	GTCTC	1 cut(s)	1135
BsnI	GGCC	5 cut(s)	60, 741, 1088, 1159, 1295
Bsp1286I	GDGCHC	2 cut(s)	1051, 1368
Bsp143I	GATC	4 cut(s)	16, 546, 697, 1149
Bsp1720I	GCTNAGC	1 cut(s)	262
Bsp19I	CCATGG	1 cut(s)	433
BspACI	CCGC	2 cut(s)	1134, 1401
BspANI	GGCC	5 cut(s)	60, 741, 1088, 1159, 1295
BspCNI	CTCAG	5 cut(s)	275, 502, 628, 949, 1213
BspHI	TCATGA	1 cut(s)	1320
BspLI	GGNNCC	5 cut(s)	742, 993, 1050, 1087, 1143
BspMAI	CTGCAG	2 cut(s)	1171, 1249
BspQI	GCTCTTC	1 cut(s)	638
BspT107I	GGYRCC	2 cut(s)	991, 1141
BsrI	ACTGG	4 cut(s)	445, 833, 1160, 1278
BssECI	CCNNGG	3 cut(s)	419, 433, 918
BssMI	GATC	4 cut(s)	16, 546, 697, 1149
BssSI	CACGAG	1 cut(s)	815
BssT1I	CCWWGG	3 cut(s)	419, 433, 918
Bst2BI	CACGAG	1 cut(s)	815
Bst4CI	ACNGT	1 cut(s)	136
Bst6I	CTCTTC	3 cut(s)	638, 1262, 1280
BstBAI	YACGTR	2 cut(s)	104, 1155
BstDEI	CTNAG	6 cut(s)	262, 489, 636, 840, 936, 1200
BstDSI	CCRYGG	1 cut(s)	433
BstF5I	GGATG	2 cut(s)	623, 1261
BstKTI	GATC	4 cut(s)	19, 549, 700, 1152
BstMAI	GTCTC	1 cut(s)	1135
BstMBI	GATC	4 cut(s)	16, 546, 697, 1149
BstMWI	GCNNNNNNNGC	4 cut(s)	929, 1085, 1229, 1385
BstNSI	RCATGY	1 cut(s)	737
BstSFI	CTRYAG	3 cut(s)	703, 1167, 1245
BstV1I	GCAGC	3 cut(s)	388, 952, 1231
BstV2I	GAAGAC	1 cut(s)	199
BstXI	CCANNNNNNTGG	1 cut(s)	440
BsuRI	GGCC	5 cut(s)	60, 741, 1088, 1159, 1295
BtgI	CCRYGG	1 cut(s)	433
BtgZI	GCGATG	1 cut(s)	332
BtsCI	GGATG	2 cut(s)	623, 1261
BtsIMutI	CAGTG	3 cut(s)	132, 1167, 1285
CaiI	CAGNNNCTG	1 cut(s)	1166
CciI	TCATGA	1 cut(s)	1320
Cfr13I	GGNCC	3 cut(s)	740, 1086, 1446
Csp6I	GTAC	2 cut(s)	481, 812
CviAII	CATG	7 cut(s)	76, 434, 454, 729, 734, 1073, 1321
CviQI	GTAC	2 cut(s)	481, 812
DdeI	CTNAG	6 cut(s)	262, 489, 636, 840, 936, 1200
DpnI	GATC	4 cut(s)	18, 548, 699, 1151
DpnII	GATC	4 cut(s)	16, 546, 697, 1149
DraIII	CACNNNGTG	1 cut(s)	107
EaeI	YGGCCR	1 cut(s)	1157
Eam1104I	CTCTTC	3 cut(s)	638, 1262, 1280
EarI	CTCTTC	3 cut(s)	638, 1262, 1280
Eco130I	CCWWGG	3 cut(s)	419, 433, 918
Eco24I	GRGCYC	1 cut(s)	1051
Eco47I	GGWCC	1 cut(s)	1446
Eco57I	CTGAAG	3 cut(s)	39, 246, 1017
Eco72I	CACGTG	2 cut(s)	104, 1155
EcoO109I	RGGNCCY	2 cut(s)	1086, 1446
EcoRI	GAATTC	2 cut(s)	602, 1111
EcoT14I	CCWWGG	3 cut(s)	419, 433, 918
EcoT38I	GRGCYC	1 cut(s)	1051
ErhI	CCWWGG	3 cut(s)	419, 433, 918
FaeI	CATG	7 cut(s)	79, 437, 457, 732, 737, 1076, 1324
FatI	CATG	7 cut(s)	75, 433, 453, 728, 733, 1072, 1320
FbaI	TGATCA	2 cut(s)	16, 1149
Fnu4HI	GCNGC	3 cut(s)	402, 941, 1245
FokI	GGATG	2 cut(s)	610, 1268
FriOI	GRGCYC	1 cut(s)	1051
Fsp4HI	GCNGC	3 cut(s)	402, 941, 1245
FspBI	CTAG	5 cut(s)	9, 258, 908, 926, 1430
GluI	GCNGC	3 cut(s)	402, 941, 1245
GsaI	CCCAGC	1 cut(s)	1140
HaeIII	GGCC	5 cut(s)	60, 741, 1088, 1159, 1295
HapII	CCGG	1 cut(s)	686
Hin1II	CATG	7 cut(s)	79, 437, 457, 732, 737, 1076, 1324
HincII	GTYRAC	1 cut(s)	664
HindII	GTYRAC	1 cut(s)	664
HinfI	GANTC	6 cut(s)	307, 371, 415, 509, 515, 1096
HpaI	GTTAAC	1 cut(s)	664
HpaII	CCGG	1 cut(s)	686
HphI	GGTGA	3 cut(s)	11, 905, 1340
Hpy166II	GTNNAC	2 cut(s)	664, 814
Hpy188I	TCNGA	6 cut(s)	312, 508, 514, 781, 1370, 1417
Hpy188III	TCNNGA	5 cut(s)	627, 926, 1067, 1093, 1321
Hpy8I	GTNNAC	2 cut(s)	664, 814
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	2 cut(s)	103, 1154
HpyCH4V	TGCA	6 cut(s)	143, 368, 695, 756, 1169, 1247
HpyF10VI	GCNNNNNNNGC	4 cut(s)	929, 1085, 1229, 1385
HpyF3I	CTNAG	6 cut(s)	262, 489, 636, 840, 936, 1200
HpySE526I	ACGT	2 cut(s)	103, 1154
Hsp92II	CATG	7 cut(s)	79, 437, 457, 732, 737, 1076, 1324
Ksp22I	TGATCA	2 cut(s)	16, 1149
KspAI	GTTAAC	1 cut(s)	664
Kzo9I	GATC	4 cut(s)	16, 546, 697, 1149
LguI	GCTCTTC	1 cut(s)	638
LmnI	GCTCC	3 cut(s)	909, 1054, 1371
Lsp1109I	GCAGC	3 cut(s)	388, 952, 1231
LweI	GCATC	1 cut(s)	632
MaeI	CTAG	5 cut(s)	9, 258, 908, 926, 1430
MaeII	ACGT	2 cut(s)	103, 1154
MaeIII	GTNAC	4 cut(s)	1093, 1195, 1203, 1309
MalI	GATC	4 cut(s)	18, 548, 699, 1151
MboI	GATC	4 cut(s)	16, 546, 697, 1149
MboII	GAAGA	9 cut(s)	28, 199, 421, 652, 655, 973, 1279, 1297, 1448
MhlI	GDGCHC	2 cut(s)	1051, 1368
MlsI	TGGCCA	1 cut(s)	1159
MluNI	TGGCCA	1 cut(s)	1159
MlyI	GAGTC	2 cut(s)	365, 1090
Mox20I	TGGCCA	1 cut(s)	1159
MscI	TGGCCA	1 cut(s)	1159
MseI	TTAA	4 cut(s)	582, 663, 834, 1421
Msp20I	TGGCCA	1 cut(s)	1159
MspA1I	CMGCKG	1 cut(s)	1136
MspI	CCGG	1 cut(s)	686
MwoI	GCNNNNNNNGC	4 cut(s)	929, 1085, 1229, 1385
NcoI	CCATGG	1 cut(s)	433
NdeII	GATC	4 cut(s)	16, 546, 697, 1149
NlaIII	CATG	7 cut(s)	79, 437, 457, 732, 737, 1076, 1324
NlaIV	GGNNCC	5 cut(s)	742, 993, 1050, 1087, 1143
NmuCI	GTSAC	2 cut(s)	1093, 1309
NspI	RCATGY	1 cut(s)	737
PagI	TCATGA	1 cut(s)	1320
PciSI	GCTCTTC	1 cut(s)	638
PfeI	GAWTC	4 cut(s)	307, 415, 509, 515
PkrI	GCNGC	3 cut(s)	403, 942, 1246
PleI	GAGTC	2 cut(s)	365, 1090
PmaCI	CACGTG	2 cut(s)	104, 1155
PmlI	CACGTG	2 cut(s)	104, 1155
PpsI	GAGTC	2 cut(s)	365, 1090
Ppu21I	YACGTR	2 cut(s)	104, 1155
PpuMI	RGGWCCY	1 cut(s)	1446
PsiI	TTATAA	1 cut(s)	297
Psp5II	RGGWCCY	1 cut(s)	1446
PspCI	CACGTG	2 cut(s)	104, 1155
PspFI	CCCAGC	1 cut(s)	1136
PspN4I	GGNNCC	5 cut(s)	742, 993, 1050, 1087, 1143
PspPI	GGNCC	3 cut(s)	740, 1086, 1446
PspPPI	RGGWCCY	1 cut(s)	1446
PstI	CTGCAG	2 cut(s)	1171, 1249
PstNI	CAGNNNCTG	1 cut(s)	1166
RsaI	GTAC	2 cut(s)	482, 813
RsaNI	GTAC	2 cut(s)	481, 812
SapI	GCTCTTC	1 cut(s)	638
SaqAI	TTAA	4 cut(s)	582, 663, 834, 1421
SatI	GCNGC	3 cut(s)	402, 941, 1245
Sau3AI	GATC	4 cut(s)	16, 546, 697, 1149
Sau96I	GGNCC	3 cut(s)	740, 1086, 1446
SchI	GAGTC	2 cut(s)	365, 1090
SduI	GDGCHC	2 cut(s)	1051, 1368
SfaNI	GCATC	1 cut(s)	632
SfcI	CTRYAG	3 cut(s)	703, 1167, 1245
SinI	GGWCC	1 cut(s)	1446
SmlI	CTYRAG	1 cut(s)	1067
SmoI	CTYRAG	1 cut(s)	1067
SsiI	CCGC	2 cut(s)	1134, 1401
SspMI	CTAG	5 cut(s)	9, 258, 908, 926, 1430
StyI	CCWWGG	3 cut(s)	419, 433, 918
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	2 cut(s)	106, 1157
TatI	WGTACW	1 cut(s)	811
TfiI	GAWTC	4 cut(s)	307, 415, 509, 515
Tru1I	TTAA	4 cut(s)	582, 663, 834, 1421
Tru9I	TTAA	4 cut(s)	582, 663, 834, 1421
TscAI	CASTG	3 cut(s)	139, 1167, 1285
TseFI	GTSAC	2 cut(s)	1093, 1309
TseI	GCWGC	3 cut(s)	401, 940, 1244
Tsp45I	GTSAC	2 cut(s)	1093, 1309
TspDTI	ATGAA	9 cut(s)	296, 320, 371, 492, 595, 690, 937, 1347, 1395
TspGWI	ACGGA	2 cut(s)	258, 1328
TspRI	CASTG	3 cut(s)	139, 1167, 1285
VpaK11BI	GGWCC	1 cut(s)	1446
XapI	RAATTY	4 cut(s)	178, 212, 602, 1111
XbaI	TCTAGA	1 cut(s)	925
XceI	RCATGY	1 cut(s)	737
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1152
XspI	CTAG	5 cut(s)	9, 258, 908, 926, 1430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.