Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003550

Physical Location & Seq

Genomic Coordinates Forward (+)

5951023 .. 5952549

Gene Structure 1527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1036900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGCCCCAGAGATCCCATTGGTTCTTCAGTCCTGTGAATTTGAGGGTCTCAAGTTCACTTGTTCTTCAGATGCTGGGCAAGCGTTGCGTGTACACTTGGCAAAAGAATGCCAAAGTTATCATCTCCAAGCTGCAATCTTCCACGAGGCTCTTCGGAGCTGCTTGCCAATAGAAAAAGATCAGAGTTCCTTGGAAAATAGAACAATCAAGAAGAAATGTGCCCATGTCCCTCTAGTGTCGCGGCCAACTGAGCCATCGTATGACGAGAGACGTGCCAAATTAAACTCCAAGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990481

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

99

Amino Acids

11.0

Weight (kDa)

8.32

Isoelectric Point (pI)

85.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34150
fragaria_vesca	FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780 FvH4_2g12780
malus_domestica	MD05G1036800.v1.1 MD05G1036900.v1.1
prunus_persica	Prupe.8G045000_v2.0.a1 Prupe.8G045000_v2.0.a1
pyrus_communis	pycom05g02710 pycom05g02720
rosa_chinensis	RchiOBHm_Chr6g0273621
rosa_laevigata	RLG00000013608
rosa_multiflora	Rmu_sc0001419.1_g000001 Rmu_sc0015671.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195210
rosa_rugosa	Rorug06G0076200 Rorug06G0076300 Rorug06G0076400
rosa_samantha	Rh6AG190900 Rh6BG194400 Rh6CG194300 Rh6DG186200
rosa_wichuraiana	Rw6G016710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	241
AciI	CCGC	1 cut(s)	241
AclWI	GGATC	1 cut(s)	7
AcoI	YGGCCR	1 cut(s)	242
AcsI	RAATTY	1 cut(s)	38
AcuI	CTGAAG	2 cut(s)	11, 51
AfaI	GTAC	1 cut(s)	93
AjiI	CACGTC	1 cut(s)	272
AluBI	AGCT	2 cut(s)	131, 159
AluI	AGCT	2 cut(s)	131, 159
Alw26I	GTCTC	2 cut(s)	53, 262
AlwI	GGATC	1 cut(s)	7
AlwNI	CAGNNNCTG	1 cut(s)	74
AoxI	GGCC	2 cut(s)	3, 242
ApeKI	GCWGC	2 cut(s)	131, 159
ApoI	RAATTY	1 cut(s)	38
AspS9I	GGNCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	223
BauI	CACGAG	1 cut(s)	143
BbvI	GCAGC	2 cut(s)	118, 146
BccI	CCATC	1 cut(s)	262
BcgI	CGANNNNNNTGC	2 cut(s)	254, 288
BcoDI	GTCTC	2 cut(s)	53, 262
BfaI	CTAG	1 cut(s)	233
BisI	GCNGC	3 cut(s)	132, 160, 242
BlsI	GCNGC	3 cut(s)	133, 161, 243
BmgBI	CACGTC	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	61
BpuEI	CTTGAG	1 cut(s)	35
BsaI	GGTCTC	1 cut(s)	53
BsaJI	CCNNGG	2 cut(s)	189, 288
BseDI	CCNNGG	2 cut(s)	189, 288
BseMII	CTCAG	1 cut(s)	240
BseSI	GKGCMC	1 cut(s)	223
BseXI	GCAGC	2 cut(s)	118, 146
BseYI	CCCAGC	1 cut(s)	74
Bsh1236I	CGCG	1 cut(s)	241
BshFI	GGCC	2 cut(s)	5, 244
BslFI	GGGAC	1 cut(s)	212
BsmAI	GTCTC	2 cut(s)	53, 262
BsmBI	CGTCTC	1 cut(s)	262
BsmFI	GGGAC	1 cut(s)	212
BsmI	GAATGC	1 cut(s)	113
BsnI	GGCC	2 cut(s)	5, 244
Bso31I	GGTCTC	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp1407I	TGTACA	1 cut(s)	91
Bsp143I	GATC	2 cut(s)	12, 178
BspACI	CCGC	1 cut(s)	241
BspANI	GGCC	2 cut(s)	5, 244
BspCNI	CTCAG	1 cut(s)	241
BspFNI	CGCG	1 cut(s)	241
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	7
BspQI	GCTCTTC	1 cut(s)	156
BspTNI	GGTCTC	1 cut(s)	53
BsrGI	TGTACA	1 cut(s)	91
BssECI	CCNNGG	2 cut(s)	189, 288
BssMI	GATC	2 cut(s)	12, 178
BssSI	CACGAG	1 cut(s)	143
BssT1I	CCWWGG	2 cut(s)	189, 288
Bst2BI	CACGAG	1 cut(s)	143
Bst6I	CTCTTC	1 cut(s)	156
BstAPI	GCANNNNNTGC	1 cut(s)	85
BstAUI	TGTACA	1 cut(s)	91
BstC8I	GCNNGC	2 cut(s)	81, 164
BstDEI	CTNAG	1 cut(s)	249
BstFNI	CGCG	1 cut(s)	241
BstKTI	GATC	2 cut(s)	15, 181
BstMAI	GTCTC	2 cut(s)	53, 262
BstMBI	GATC	2 cut(s)	12, 178
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 85, 250
BstSLI	GKGCMC	1 cut(s)	223
BstUI	CGCG	1 cut(s)	241
BstV1I	GCAGC	2 cut(s)	118, 146
BstX2I	RGATCY	1 cut(s)	12
BstYI	RGATCY	1 cut(s)	12
BsuRI	GGCC	2 cut(s)	5, 244
BtrI	CACGTC	1 cut(s)	272
Cac8I	GCNNGC	2 cut(s)	81, 164
CaiI	CAGNNNCTG	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	92
CviAII	CATG	1 cut(s)	224
CviJI	RGCY	6 cut(s)	5, 131, 149, 159, 244, 253
CviKI_1	RGCY	6 cut(s)	5, 131, 149, 159, 244, 253
CviQI	GTAC	1 cut(s)	92
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	2 cut(s)	14, 180
DpnII	GATC	2 cut(s)	12, 178
EaeI	YGGCCR	1 cut(s)	242
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco130I	CCWWGG	2 cut(s)	189, 288
Eco31I	GGTCTC	1 cut(s)	53
Eco57I	CTGAAG	2 cut(s)	11, 51
EcoT14I	CCWWGG	2 cut(s)	189, 288
ErhI	CCWWGG	2 cut(s)	189, 288
Esp3I	CGTCTC	1 cut(s)	262
FaeI	CATG	1 cut(s)	227
FaiI	YATR	2 cut(s)	225, 261
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	1 cut(s)	223
Fnu4HI	GCNGC	3 cut(s)	132, 160, 242
Fsp4HI	GCNGC	3 cut(s)	132, 160, 242
FspBI	CTAG	1 cut(s)	233
GluI	GCNGC	3 cut(s)	132, 160, 242
GsaI	CCCAGC	1 cut(s)	78
HaeIII	GGCC	2 cut(s)	5, 244
Hin1II	CATG	1 cut(s)	227
Hpy166II	GTNNAC	3 cut(s)	57, 92, 94
Hpy188I	TCNGA	3 cut(s)	70, 156, 183
Hpy188III	TCNNGA	1 cut(s)	208
Hpy8I	GTNNAC	3 cut(s)	57, 92, 94
HpyCH4IV	ACGT	1 cut(s)	271
HpyCH4V	TGCA	1 cut(s)	134
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 85, 250
HpyF3I	CTNAG	1 cut(s)	249
HpySE526I	ACGT	1 cut(s)	271
Hsp92II	CATG	1 cut(s)	227
Kzo9I	GATC	2 cut(s)	12, 178
LguI	GCTCTTC	1 cut(s)	156
LmnI	GCTCC	1 cut(s)	156
LpnPI	CCDG	3 cut(s)	21, 46, 60
Lsp1109I	GCAGC	2 cut(s)	118, 146
LweI	GCATC	1 cut(s)	61
MaeI	CTAG	1 cut(s)	233
MaeII	ACGT	1 cut(s)	271
MalI	GATC	2 cut(s)	14, 180
MboI	GATC	2 cut(s)	12, 178
MboII	GAAGA	5 cut(s)	17, 57, 130, 143, 223
MflI	RGATCY	1 cut(s)	12
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	2 cut(s)	38, 278
MnlI	CCTC	3 cut(s)	37, 139, 240
MseI	TTAA	1 cut(s)	281
Mva1269I	GAATGC	1 cut(s)	113
MvnI	CGCG	1 cut(s)	241
MwoI	GCNNNNNNNGC	3 cut(s)	80, 85, 250
NdeII	GATC	2 cut(s)	12, 178
NlaIII	CATG	1 cut(s)	227
NlaIV	GGNNCC	1 cut(s)	6
PciSI	GCTCTTC	1 cut(s)	156
PctI	GAATGC	1 cut(s)	113
PkrI	GCNGC	3 cut(s)	133, 161, 243
PspFI	CCCAGC	1 cut(s)	74
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	4
PstNI	CAGNNNCTG	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	12
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
SapI	GCTCTTC	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	281
SatI	GCNGC	3 cut(s)	132, 160, 242
Sau3AI	GATC	2 cut(s)	12, 178
Sau96I	GGNCC	1 cut(s)	4
SduI	GDGCHC	1 cut(s)	223
SetI	ASST	3 cut(s)	133, 161, 274
SfaNI	GCATC	1 cut(s)	61
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
Sse9I	AATT	2 cut(s)	38, 278
SsiI	CCGC	1 cut(s)	241
SspMI	CTAG	1 cut(s)	233
StyI	CCWWGG	2 cut(s)	189, 288
TaiI	ACGT	1 cut(s)	274
TasI	AATT	2 cut(s)	38, 278
TatI	WGTACW	1 cut(s)	91
TauI	GCSGC	1 cut(s)	244
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TseI	GCWGC	2 cut(s)	131, 159
XapI	RAATTY	1 cut(s)	38
XspI	CTAG	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.