FvH4_2g12810

Protein of unknown function (DUF1475)

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
11258015 .. 11263789
5775 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g12810.t1

Sequence Viewer

Length: 687 bp
ATGCTGCTTACTCTTGTTTACACCATCTTCTCTGACGGTCTTCCCTTCCGCTCCGACCTCCTTACTCCGTGGATGGCTGCAACCTTGGTTGATTTCTACATCAATGTTGTGCCTATAGCGGCTTGGGTTTTCTACAAGGAATCAAACTGGATTAGTGCAGCACTGTGGATAGTACTGCTAGTATGTTTTGGAAGTGTGACTACATGTGGCTACATTCTTCTGCAATTGATGAAGCTTTCTACGAAAGAATCAGAAGATCCCATTTACCATGTTCTGTTGTGCCATTCAAACAAGTATGGTGTGGTAGACAAGCATAAGCAGTCCCCTGTTCTGATTGCCAGAGTTGTATTCACTGCTTTGGGGCTTTTTATGCTGGGAACTCTCCTATATACTCTGTTAACAGATGGTTCTCCTTTTCGCAAAGAGCTTTTAACACCGTGGATGGTAGCTACTCTAGTTGACTTTTATATCAATGTTACAGCTCTTTCAGTTTGGGTTGCTTACAAAGAATCAAGTTGGATTACTGCAGTTGTATGGATAATTTTATTGATATGTTTTGGCAGCATCACCACATGTGTCTATATCCTTATTCAGCTGTCACAGCTGACATCCCAAGATCTAATCTACCTTGCTTTGTTTAAAGGTGGTGACAGGGCAGAAAGGAGGTCTGAGGGGGTTTTGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

229

Amino Acids

25.74

Weight (kDa)

6.27

Isoelectric Point (pI)

42.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1475 PF07343 4 - 98 9.6e-41 Protein of unknown function (DUF1475)
DUF1475 PF07343 100 - 214 3.6e-43 Protein of unknown function (DUF1475)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 51
AccI GTMKAC 1 cut(s) 306
AciI CCGC 2 cut(s) 49, 119
AclWI GGATC 1 cut(s) 251
AfaI GTAC 1 cut(s) 174
AflIII ACRYGT 2 cut(s) 203, 572
AgsI TTSAA 1 cut(s) 288
AluBI AGCT 6 cut(s) 235, 427, 449, 482, 595, 604
AluI AGCT 6 cut(s) 235, 427, 449, 482, 595, 604
AlwI GGATC 1 cut(s) 251
ApeKI GCWGC 4 cut(s) 4, 77, 158, 561
AsuHPI GGTGA 2 cut(s) 559, 659
BarI GAAGNNNNNNTAC 2 cut(s) 184, 216
BbsI GAAGAC 1 cut(s) 32
BbvI GCAGC 3 cut(s) 64, 170, 573
BccI CCATC 4 cut(s) 32, 67, 398, 436
BfaI CTAG 2 cut(s) 179, 455
BfmI CTRYAG 2 cut(s) 114, 525
BglII AGATCT 1 cut(s) 616
BisI GCNGC 5 cut(s) 5, 78, 120, 159, 562
BlsI GCNGC 5 cut(s) 6, 79, 121, 160, 563
BmcAI AGTACT 1 cut(s) 174
BmsI GCATC 1 cut(s) 573
BpiI GAAGAC 1 cut(s) 32
BsaJI CCNNGG 3 cut(s) 68, 84, 437
Bse1I ACTGG 1 cut(s) 152
BseDI CCNNGG 3 cut(s) 68, 84, 437
BseGI GGATG 3 cut(s) 78, 447, 608
BseMII CTCAG 1 cut(s) 660
BseNI ACTGG 1 cut(s) 152
BseXI GCAGC 3 cut(s) 64, 170, 573
BseYI CCCAGC 1 cut(s) 373
BsgI GTGCAG 1 cut(s) 177
BslFI GGGAC 1 cut(s) 307
BsmFI GGGAC 1 cut(s) 307
Bsp143I GATC 2 cut(s) 256, 616
BspACI CCGC 2 cut(s) 49, 119
BspCNI CTCAG 1 cut(s) 661
BspMAI CTGCAG 1 cut(s) 529
BspPI GGATC 1 cut(s) 251
BsrBI CCGCTC 1 cut(s) 51
BsrI ACTGG 1 cut(s) 152
BssECI CCNNGG 3 cut(s) 68, 84, 437
BssMI GATC 2 cut(s) 256, 616
BssT1I CCWWGG 1 cut(s) 84
Bst4CI ACNGT 3 cut(s) 38, 165, 438
BstDEI CTNAG 1 cut(s) 669
BstDSI CCRYGG 2 cut(s) 68, 437
BstF5I GGATG 3 cut(s) 78, 447, 608
BstKTI GATC 2 cut(s) 259, 619
BstMBI GATC 2 cut(s) 256, 616
BstMWI GCNNNNNNNGC 2 cut(s) 370, 601
BstNSI RCATGY 2 cut(s) 207, 576
BstSFI CTRYAG 2 cut(s) 114, 525
BstV1I GCAGC 3 cut(s) 64, 170, 573
BstV2I GAAGAC 1 cut(s) 32
BstX2I RGATCY 2 cut(s) 256, 616
BstYI RGATCY 2 cut(s) 256, 616
BtgI CCRYGG 2 cut(s) 68, 437
BtsCI GGATG 3 cut(s) 78, 447, 608
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 2 cut(s) 161, 351
Csp6I GTAC 1 cut(s) 173
CviAII CATG 3 cut(s) 204, 269, 573
CviQI GTAC 1 cut(s) 173
DdeI CTNAG 1 cut(s) 669
DpnI GATC 2 cut(s) 258, 618
DpnII GATC 2 cut(s) 256, 616
DraI TTTAAA 1 cut(s) 640
Eco130I CCWWGG 1 cut(s) 84
EcoT14I CCWWGG 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 3 cut(s) 207, 272, 576
FaqI GGGAC 1 cut(s) 307
FatI CATG 3 cut(s) 203, 268, 572
FblI GTMKAC 1 cut(s) 306
Fnu4HI GCNGC 5 cut(s) 5, 78, 120, 159, 562
FokI GGATG 3 cut(s) 85, 454, 595
Fsp4HI GCNGC 5 cut(s) 5, 78, 120, 159, 562
FspBI CTAG 2 cut(s) 179, 455
GluI GCNGC 5 cut(s) 5, 78, 120, 159, 562
GsaI CCCAGC 1 cut(s) 377
Hin1II CATG 3 cut(s) 207, 272, 576
HincII GTYRAC 2 cut(s) 399, 460
HindII GTYRAC 2 cut(s) 399, 460
HindIII AAGCTT 1 cut(s) 233
HinfI GANTC 3 cut(s) 140, 248, 509
HpaI GTTAAC 1 cut(s) 399
HphI GGTGA 2 cut(s) 559, 659
Hpy166II GTNNAC 4 cut(s) 19, 307, 399, 460
Hpy188I TCNGA 5 cut(s) 34, 55, 253, 333, 670
Hpy8I GTNNAC 4 cut(s) 19, 307, 399, 460
HpyAV CCTTC 1 cut(s) 55
HpyCH4III ACNGT 3 cut(s) 38, 165, 438
HpyCH4V TGCA 4 cut(s) 80, 158, 223, 527
HpyF10VI GCNNNNNNNGC 2 cut(s) 370, 601
HpyF3I CTNAG 1 cut(s) 669
Hsp92II CATG 3 cut(s) 207, 272, 576
KspAI GTTAAC 1 cut(s) 399
Kzo9I GATC 2 cut(s) 256, 616
LmnI GCTCC 1 cut(s) 56
LpnPI CCDG 5 cut(s) 133, 339, 352, 359, 637
Lsp1109I GCAGC 3 cut(s) 64, 170, 573
LweI GCATC 1 cut(s) 573
MaeI CTAG 2 cut(s) 179, 455
MaeIII GTNAC 4 cut(s) 196, 475, 597, 647
MalI GATC 2 cut(s) 258, 618
MbiI CCGCTC 1 cut(s) 51
MboI GATC 2 cut(s) 256, 616
MboII GAAGA 4 cut(s) 19, 32, 209, 266
MfeI CAATTG 1 cut(s) 224
MflI RGATCY 2 cut(s) 256, 616
MluCI AATT 2 cut(s) 224, 540
MmeI TCCRAC 2 cut(s) 78, 497
MnlI CCTC 3 cut(s) 68, 657, 664
MseI TTAA 3 cut(s) 398, 431, 639
MspA1I CMGCKG 2 cut(s) 595, 604
MunI CAATTG 1 cut(s) 224
MwoI GCNNNNNNNGC 2 cut(s) 370, 601
NdeII GATC 2 cut(s) 256, 616
NlaIII CATG 3 cut(s) 207, 272, 576
NmuCI GTSAC 3 cut(s) 196, 597, 647
NspI RCATGY 2 cut(s) 207, 576
PciI ACATGT 2 cut(s) 203, 572
PfeI GAWTC 3 cut(s) 140, 248, 509
PkrI GCNGC 5 cut(s) 6, 79, 121, 160, 563
PscI ACATGT 2 cut(s) 203, 572
PspFI CCCAGC 1 cut(s) 373
PstI CTGCAG 1 cut(s) 529
PsuI RGATCY 2 cut(s) 256, 616
PvuII CAGCTG 2 cut(s) 595, 604
RsaI GTAC 1 cut(s) 174
RsaNI GTAC 1 cut(s) 173
SaqAI TTAA 3 cut(s) 398, 431, 639
SatI GCNGC 5 cut(s) 5, 78, 120, 159, 562
Sau3AI GATC 2 cut(s) 256, 616
ScaI AGTACT 1 cut(s) 174
SfaNI GCATC 1 cut(s) 573
SfcI CTRYAG 2 cut(s) 114, 525
Sse9I AATT 2 cut(s) 224, 540
SsiI CCGC 2 cut(s) 49, 119
SspMI CTAG 2 cut(s) 179, 455
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 3 cut(s) 38, 165, 438
TasI AATT 2 cut(s) 224, 540
TatI WGTACW 1 cut(s) 172
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 3 cut(s) 140, 248, 509
Tru1I TTAA 3 cut(s) 398, 431, 639
Tru9I TTAA 3 cut(s) 398, 431, 639
TscAI CASTG 2 cut(s) 168, 358
TseFI GTSAC 3 cut(s) 196, 597, 647
TseI GCWGC 4 cut(s) 4, 77, 158, 561
Tsp45I GTSAC 3 cut(s) 196, 597, 647
TspDTI ATGAA 1 cut(s) 245
TspGWI ACGGA 1 cut(s) 57
TspRI CASTG 2 cut(s) 168, 358
XceI RCATGY 2 cut(s) 207, 576
XmiI GTMKAC 1 cut(s) 306
XspI CTAG 2 cut(s) 179, 455
ZrmI AGTACT 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.