Rorug06G0077400

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001075
Physical Location & Seq
Forward (+)
10338473 .. 10343459
4987 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0077400.1

Sequence Viewer

Length: 2547 bp
ATGGACCACAAGGGTTGGCTTTGGAGGAAAAAATCTTCAGAGAAGATAATTGTTTCAACTAACAGACTTGCCATTCCTTTAGGAACAATTGAAGAAGAGGTACAAACAAATCCGCCTGAGAAAGGAAATGATGTAGAGAGACCAGGGAAAAATCTAAATGAGAAGTTAGCTTCAGTCCTCCTGGACTCTAATGTTAAAGAAGAAGGCACACCAGGAGATTTGGTACCAAAGCAAGAACTAGATGAAGCTTTGAGGCAGGGAATAGCTGCAAATGAAAGATCGATTCATTCGGATGATGCATTGAAAGAATGCATGGAACAATTAATTCTTGTTCGGGAAGAACAGGAGCAAAGAATACATGATGCTGTTATGATGACATCGAGAGAGTATGAGAAATCTCAGAAAAAATTAGAAGCTAAGTTGCGAGAGACAAGTGAACAGGTTACAAACTTAGCTGTGGAAAATACGAATCTGACCAGGGCCCTTCGAGCAAAAGAGAAGTTGATGGAAGATTTACGTAGACAGAAGTCTCAAACAGATGCAGAATTTAGTGCACTAATGGCTAGACTGGATTCCACAGAAAAAGAAAATGCCTTCTTAAGATATGAATTTCACATGCTCGAGAAGGAACTCGAGATTCGTAGCGAGGAGATGGAGTACAACCGTCGGTCTGCTGAAGAATCGCACAAACAGCACTTGGAGAGTATGATGAGAATCACAGAGTTAGAACAAGAATGTCAAAGACTTCATCTTCTTCTGCGAAAACGGCTGCCAGGTCCTGTTTCGATGACTATGAAGAATGAAGCTAAAATGATGGGGAGGGATCAGACAGAGATGAGAAGAAGGAAGCTTAATCCTACTAGAGATATGATCGTAAGAGATGCCAACATGGGAAACTCTCCTGAAATACCAAATAAGAATATGAGTTTCATGATTGAGCAGTTACGTAATATGGAAGAAGAAAACAAAGTTCTTAGAGATATTTTAACCAGGAAAAACTCTGAGCTCCTTTCTTCGAGGAACATGCATTCTCAAACAGCTTCCAGATTGTCTCAAGCTGAGAAATCTATGGAGCTGGCACGATGTAGTCCCATCCCAAATGATGTTTCTCGATCTTCAAGGTATGACATTTGCAGTGATGATGGGATGAGTTCCTCCGAATCTTGGGCTGGTGCATTACTGTCAGAGTTGGAACATTTTAGAAGTGGGAGGCTTAAAAGTCCACAGCAGCACAAAGAAATGGAGGTTTCAGACATGAGCTTAATGGATGATTTTGTTGAGATGGAGAAATTGGCAATAGTTTCTGCAGATACACCTCCTAAAAATGCCCATAATCTTCGTTTTAATGGTAAGGACCTGGTACGAGTTGAAGTTCAATCTAGCGTCAGTGACATAAGAAAGTATGGCGAGTCCAGAGATGTAGTACCTGAGAGTTCTTTTGACTGGCTTCAGGTTGTTTTAAAAGCAATGTTGGAGCAAAAGAATGTTTCAAAACGAAGTCTAGATGAGCTATTTGAGGACATCAAAATTGCTTTGGGTTACCTAAAACAGCCAACTAAGCATGAGGCTAGTAAAACTGCAGAATATCAAGAGGAGTCACTGTGTCTTGCTCTAGTTGCTTCCTCAAATGAAAACAAGGTTGGTGATAAATTGCAAGAAGAAAACAGCAGATTAAAAAATGAACTGATGAATATGGAATCTGCAAAGAAAGAAATGGAAGCTAGGCTACAGTCAGAAACTGAAAAGAATGAAGCGTTGATGGTACAACTTCAGGAATCACAGCAAAGCCTTGGAACCTTACAAACAGAACTGGAGAGTCTGAGAGAAGCGGAGAGGATGATAGAAGACCAGCTCGAAAATCAGAAGTCGATTAATGAAGATCTCGATACCCAGCTGACTATTGCCAAAGCAAAGTTAAATGAAGTCTTCCAGAAGTTCTCGTCTTTAGAAGTGGAATTGGAGGATAAACATAACTGTTTTGAAGAATTAGAAGCAACATGTCTTGAGCTCCAACTCCAGCAAGAAAGTGCTGCAAAGACGGAAACTCCAGAGTATGACATAAGCAAAGAGGAAAAACAGTCCCAACCTGGATGGGAAATCACAACAGCTTCAGTGAAGTTGGCAGAGTGCCAAGAAACCATCCTAAACTTGGGAAAACAGCTGAAGGCACTAGCTACACCAAGAGAAGCAGCACTGTTTGACAAGGTGTTCTCGACCACCAGCGCTGCAGCCAACACCAAGCGCTCTTCCCTACGTGATCGAATGCTAGCTGATGAAGATCCCAGAGCAGAGGTTCTGAAGTCTCCAAAAGATAAACAAGCAATGAGGGATGCAGATGCACAGAAACCATCCCTCCTTCACTCTGATAGTCATAACGCATTGTCCACTCCTAGTGCTCTGGTAAATACGCGGCAAGGTCATTTTGGTTCAAAGCATCTGGCTATTGTGCCGAGTAAGAAACAGGGAGGTTTTGGTTTTCTAAGGAGGCTACTGCTGAGGAGGAAGAAAGGAAGCAGCAAGAAACCCCAAACCTTGGCCAAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

848

Amino Acids

96.86

Weight (kDa)

5.68

Isoelectric Point (pI)

60.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FPP PF05911 77 - 529 2.1e-147 Filament-like plant protein, long coiled-coil
FPP PF05911 521 - 731 3.9e-55 Filament-like plant protein, long coiled-coil
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 223
AccB1I GGYRCC 1 cut(s) 223
AccB7I CCANNNNNTGG 1 cut(s) 2533
AccI GTMKAC 1 cut(s) 520
AccII CGCG 1 cut(s) 2410
AciI CCGC 3 cut(s) 113, 1829, 2410
AclWI GGATC 2 cut(s) 831, 2273
AcoI YGGCCR 1 cut(s) 2535
AcsI RAATTY 2 cut(s) 545, 608
AcuI CTGAAG 8 cut(s) 21, 156, 696, 1433, 1754, 2094, 2183, 2318
AfaI GTAC 6 cut(s) 102, 225, 659, 1362, 1425, 1764
AfeI AGCGCT 2 cut(s) 2224, 2243
AfiI CCNNNNNNNGG 4 cut(s) 122, 1164, 2149, 2533
AflII CTTAAG 1 cut(s) 598
AflIII ACRYGT 1 cut(s) 1997
AgsI TTSAA 9 cut(s) 57, 92, 304, 1119, 1370, 1376, 1491, 1982, 2430
AjnI CCWGG 8 cut(s) 142, 180, 211, 476, 772, 989, 1356, 2086
AjuI GAANNNNNNNTTGG 4 cut(s) 1090, 1122, 1623, 1655
Alw21I GWGCWC 4 cut(s) 556, 1008, 2010, 2398
Alw26I GTCTC 5 cut(s) 133, 422, 534, 1056, 2307
Alw44I GTGCAC 1 cut(s) 552
AlwI GGATC 2 cut(s) 831, 2273
AlwNI CAGNNNCTG 2 cut(s) 779, 1739
Ama87I CYCGRG 2 cut(s) 620, 632
Aor51HI AGCGCT 2 cut(s) 2224, 2243
AoxI GGCC 2 cut(s) 480, 2535
ApaI GGGCCC 1 cut(s) 484
ApaLI GTGCAC 1 cut(s) 552
ApeKI GCWGC 8 cut(s) 266, 769, 1228, 2030, 2189, 2225, 2228, 2514
ApoI RAATTY 2 cut(s) 545, 608
AseI ATTAAT 2 cut(s) 323, 1872
Asp718I GGTACC 1 cut(s) 223
AspLEI GCGC 2 cut(s) 2225, 2244
AspS9I GGNCC 5 cut(s) 4, 480, 481, 776, 1354
AsuHPI GGTGA 1 cut(s) 1655
AsuNHI GCTAGC 1 cut(s) 2266
AvaI CYCGRG 2 cut(s) 620, 632
AvaII GGWCC 3 cut(s) 4, 776, 1354
BaeGI GKGCMC 2 cut(s) 484, 556
BalI TGGCCA 1 cut(s) 2537
BanI GGYRCC 1 cut(s) 223
BanII GRGCYC 3 cut(s) 484, 1008, 2010
BarI GAAGNNNNNNTAC 4 cut(s) 84, 116, 1710, 1742
BbsI GAAGAC 2 cut(s) 1851, 1918
Bbv12I GWGCWC 4 cut(s) 556, 1008, 2010, 2398
BbvCI CCTCAGC 1 cut(s) 2495
BbvI GCAGC 8 cut(s) 253, 756, 1240, 2017, 2201, 2212, 2240, 2526
BceAI ACGGC 1 cut(s) 782
BcgI CGANNNNNNTGC 2 cut(s) 1006, 1040
BciT130I CCWGG 8 cut(s) 144, 182, 213, 478, 774, 991, 1358, 2088
BcoDI GTCTC 5 cut(s) 133, 422, 534, 1056, 2307
BfmI CTRYAG 4 cut(s) 1305, 1578, 1727, 2226
BfoI RGCGCY 2 cut(s) 2226, 2245
BfrI CTTAAG 1 cut(s) 598
BglII AGATCT 1 cut(s) 1879
BisI GCNGC 9 cut(s) 267, 770, 1229, 2031, 2190, 2226, 2229, 2411, 2515
BlsI GCNGC 9 cut(s) 268, 771, 1230, 2032, 2191, 2227, 2230, 2412, 2516
Bme1390I CCNGG 8 cut(s) 144, 182, 213, 478, 774, 991, 1358, 2088
Bme18I GGWCC 3 cut(s) 4, 776, 1354
BmeT110I CYCGRG 2 cut(s) 620, 632
BmgT120I GGNCC 5 cut(s) 4, 480, 481, 776, 1354
BmiI GGNNCC 3 cut(s) 225, 482, 1795
BmrFI CCNGG 8 cut(s) 144, 182, 213, 478, 774, 991, 1358, 2088
BmsI GCATC 7 cut(s) 286, 352, 529, 871, 2320, 2326, 2443
BmtI GCTAGC 1 cut(s) 2270
BoxI GACNNNNGTC 1 cut(s) 526
BpiI GAAGAC 2 cut(s) 1851, 1918
BpmI CTGGAG 3 cut(s) 1832, 2000, 2031
Bpu10I CCTNAGC 1 cut(s) 2495
BpuEI CTTGAG 2 cut(s) 1038, 2024
Bsa29I ATCGAT 1 cut(s) 281
BsaAI YACGTR 3 cut(s) 518, 947, 2255
BsaBI GATNNNNATC 2 cut(s) 713, 2277
BsaI GGTCTC 1 cut(s) 133
BsaJI CCNNGG 4 cut(s) 143, 477, 1789, 2532
Bsc4I CCNNNNNNNGG 4 cut(s) 122, 1164, 2149, 2533
Bse1I ACTGG 3 cut(s) 573, 1448, 1815
Bse3DI GCAATG 2 cut(s) 1473, 2328
Bse8I GATNNNNATC 2 cut(s) 713, 2277
BseBI CCWGG 8 cut(s) 144, 182, 213, 478, 774, 991, 1358, 2088
BseCI ATCGAT 1 cut(s) 281
BseDI CCNNGG 4 cut(s) 143, 477, 1789, 2532
BseGI GGATG 9 cut(s) 298, 1092, 1152, 1273, 1842, 2096, 2139, 2335, 2348
BseJI GATNNNNATC 2 cut(s) 713, 2277
BseLI CCNNNNNNNGG 4 cut(s) 122, 1164, 2149, 2533
BseMI GCAATG 2 cut(s) 1473, 2328
BseMII CTCAG 7 cut(s) 108, 413, 993, 1050, 1419, 1811, 2486
BseNI ACTGG 3 cut(s) 573, 1448, 1815
BseRI GAGGAG 3 cut(s) 662, 1607, 2512
BseSI GKGCMC 2 cut(s) 484, 556
BseXI GCAGC 8 cut(s) 253, 756, 1240, 2017, 2201, 2212, 2240, 2526
BseYI CCCAGC 1 cut(s) 1890
Bsh1236I CGCG 1 cut(s) 2410
BshFI GGCC 2 cut(s) 482, 2537
BshNI GGYRCC 1 cut(s) 223
BshVI ATCGAT 1 cut(s) 281
BsiHKAI GWGCWC 4 cut(s) 556, 1008, 2010, 2398
BsiHKCI CYCGRG 2 cut(s) 620, 632
BslFI GGGAC 2 cut(s) 1074, 2065
BslI CCNNNNNNNGG 4 cut(s) 122, 1164, 2149, 2533
BsmAI GTCTC 5 cut(s) 133, 422, 534, 1056, 2307
BsmFI GGGAC 2 cut(s) 1074, 2065
BsmI GAATGC 3 cut(s) 314, 1027, 2268
BsnI GGCC 2 cut(s) 482, 2537
Bso31I GGTCTC 1 cut(s) 133
BsoBI CYCGRG 2 cut(s) 620, 632
Bsp120I GGGCCC 1 cut(s) 480
Bsp1286I GDGCHC 5 cut(s) 484, 556, 1008, 2010, 2398
Bsp143I GATC 7 cut(s) 278, 823, 870, 1112, 1879, 2257, 2278
BspACI CCGC 3 cut(s) 113, 1829, 2410
BspANI GGCC 2 cut(s) 482, 2537
BspCNI CTCAG 7 cut(s) 109, 412, 994, 1051, 1420, 1812, 2487
BspDI ATCGAT 1 cut(s) 281
BspFNI CGCG 1 cut(s) 2410
BspHI TCATGA 1 cut(s) 930
BspLI GGNNCC 3 cut(s) 225, 482, 1795
BspMAI CTGCAG 3 cut(s) 1309, 1582, 2230
BspOI GCTAGC 1 cut(s) 2270
BspPI GGATC 2 cut(s) 831, 2273
BspQI GCTCTTC 1 cut(s) 2251
BspT107I GGYRCC 1 cut(s) 223
BspTI CTTAAG 1 cut(s) 598
BspTNI GGTCTC 1 cut(s) 133
BsrDI GCAATG 2 cut(s) 1473, 2328
BsrI ACTGG 3 cut(s) 573, 1448, 1815
BssECI CCNNGG 4 cut(s) 143, 477, 1789, 2532
BssMI GATC 7 cut(s) 278, 823, 870, 1112, 1879, 2257, 2278
BssT1I CCWWGG 2 cut(s) 1789, 2532
Bst2UI CCWGG 8 cut(s) 144, 182, 213, 478, 774, 991, 1358, 2088
Bst4CI ACNGT 7 cut(s) 665, 1182, 1602, 1731, 1976, 2079, 2196
Bst6I CTCTTC 2 cut(s) 90, 2251
BstAFI CTTAAG 1 cut(s) 598
BstBAI YACGTR 3 cut(s) 518, 947, 2255
BstC8I GCNNGC 2 cut(s) 1077, 2268
BstEII GGTNACC 1 cut(s) 1538
BstENI CCTNNNNNAGG 1 cut(s) 120
BstF5I GGATG 9 cut(s) 298, 1092, 1152, 1273, 1842, 2096, 2139, 2335, 2348
BstFNI CGCG 1 cut(s) 2410
BstH2I RGCGCY 2 cut(s) 2226, 2245
BstHHI GCGC 2 cut(s) 2225, 2244
BstKTI GATC 7 cut(s) 281, 826, 873, 1115, 1882, 2260, 2281
BstMAI GTCTC 5 cut(s) 133, 422, 534, 1056, 2307
BstMBI GATC 7 cut(s) 278, 823, 870, 1112, 1879, 2257, 2278
BstMWI GCNNNNNNNGC 6 cut(s) 488, 560, 691, 766, 1558, 1616
BstNI CCWGG 8 cut(s) 144, 182, 213, 478, 774, 991, 1358, 2088
BstNSI RCATGY 3 cut(s) 619, 1027, 2001
BstPAI GACNNNNGTC 1 cut(s) 526
BstPI GGTNACC 1 cut(s) 1538
BstSCI CCNGG 8 cut(s) 142, 180, 211, 476, 772, 989, 1356, 2086
BstSFI CTRYAG 4 cut(s) 1305, 1578, 1727, 2226
BstSLI GKGCMC 2 cut(s) 484, 556
BstSNI TACGTA 2 cut(s) 518, 947
BstUI CGCG 1 cut(s) 2410
BstV1I GCAGC 8 cut(s) 253, 756, 1240, 2017, 2201, 2212, 2240, 2526
BstV2I GAAGAC 2 cut(s) 1851, 1918
BstX2I RGATCY 2 cut(s) 1879, 2278
BstYI RGATCY 2 cut(s) 1879, 2278
Bsu15I ATCGAT 1 cut(s) 281
BsuRI GGCC 2 cut(s) 482, 2537
BsuTUI ATCGAT 1 cut(s) 281
BtsCI GGATG 9 cut(s) 298, 1092, 1152, 1273, 1842, 2096, 2139, 2335, 2348
BtsI GCAGTG 1 cut(s) 1141
BtsIMutI CAGTG 5 cut(s) 1141, 1393, 1598, 2118, 2192
Cac8I GCNNGC 2 cut(s) 1077, 2268
CaiI CAGNNNCTG 2 cut(s) 779, 1739
CciI TCATGA 1 cut(s) 930
CfoI GCGC 2 cut(s) 2225, 2244
Cfr13I GGNCC 5 cut(s) 4, 480, 481, 776, 1354
ClaI ATCGAT 1 cut(s) 281
CseI GACGC 1 cut(s) 1372
CsiI ACCWGGT 1 cut(s) 1356
Csp6I GTAC 6 cut(s) 101, 224, 658, 1361, 1424, 1763
CspCI CAANNNNNGTGG 1 cut(s) 31
CviAII CATG 9 cut(s) 313, 359, 616, 889, 931, 1024, 1255, 1562, 1998
CviQI GTAC 6 cut(s) 101, 224, 658, 1361, 1424, 1763
DpnI GATC 7 cut(s) 280, 825, 872, 1114, 1881, 2259, 2280
DpnII GATC 7 cut(s) 278, 823, 870, 1112, 1879, 2257, 2278
DraI TTTAAA 1 cut(s) 1461
EaeI YGGCCR 1 cut(s) 2535
Eam1104I CTCTTC 2 cut(s) 90, 2251
EarI CTCTTC 2 cut(s) 90, 2251
EciI GGCGGA 1 cut(s) 102
Ecl136II GAGCTC 2 cut(s) 1006, 2008
Eco105I TACGTA 2 cut(s) 518, 947
Eco130I CCWWGG 2 cut(s) 1789, 2532
Eco24I GRGCYC 3 cut(s) 484, 1008, 2010
Eco31I GGTCTC 1 cut(s) 133
Eco47I GGWCC 3 cut(s) 4, 776, 1354
Eco47III AGCGCT 2 cut(s) 2224, 2243
Eco53kI GAGCTC 2 cut(s) 1006, 2008
Eco57I CTGAAG 8 cut(s) 21, 156, 696, 1433, 1754, 2094, 2183, 2318
Eco88I CYCGRG 2 cut(s) 620, 632
Eco91I GGTNACC 1 cut(s) 1538
EcoICRI GAGCTC 2 cut(s) 1006, 2008
EcoNI CCTNNNNNAGG 1 cut(s) 120
EcoO109I RGGNCCY 4 cut(s) 480, 481, 776, 1354
EcoO65I GGTNACC 1 cut(s) 1538
EcoRII CCWGG 8 cut(s) 142, 180, 211, 476, 772, 989, 1356, 2086
EcoT14I CCWWGG 2 cut(s) 1789, 2532
EcoT22I ATGCAT 3 cut(s) 301, 314, 1029
EcoT38I GRGCYC 3 cut(s) 484, 1008, 2010
ErhI CCWWGG 2 cut(s) 1789, 2532
FaeI CATG 9 cut(s) 316, 362, 619, 892, 934, 1027, 1258, 1565, 2001
FaqI GGGAC 2 cut(s) 1074, 2065
FatI CATG 9 cut(s) 312, 358, 615, 888, 930, 1023, 1254, 1561, 1997
FblI GTMKAC 1 cut(s) 520
Fnu4HI GCNGC 9 cut(s) 267, 770, 1229, 2031, 2190, 2226, 2229, 2411, 2515
FokI GGATG 9 cut(s) 305, 1079, 1159, 1280, 1849, 2103, 2126, 2335, 2342
FriOI GRGCYC 3 cut(s) 484, 1008, 2010
Fsp4HI GCNGC 9 cut(s) 267, 770, 1229, 2031, 2190, 2226, 2229, 2411, 2515
GlaI GCGC 2 cut(s) 2224, 2243
GluI GCNGC 9 cut(s) 267, 770, 1229, 2031, 2190, 2226, 2229, 2411, 2515
GsaI CCCAGC 1 cut(s) 1894
GsuI CTGGAG 3 cut(s) 1832, 2000, 2031
HaeII RGCGCY 2 cut(s) 2226, 2245
HaeIII GGCC 2 cut(s) 482, 2537
HgaI GACGC 1 cut(s) 1372
HhaI GCGC 2 cut(s) 2225, 2244
Hin1II CATG 9 cut(s) 316, 362, 619, 892, 934, 1027, 1258, 1565, 2001
Hin6I GCGC 2 cut(s) 2223, 2242
HinP1I GCGC 2 cut(s) 2223, 2242
HindIII AAGCTT 3 cut(s) 246, 848, 2541
HphI GGTGA 1 cut(s) 1655
Hpy166II GTNNAC 5 cut(s) 437, 521, 554, 1223, 2385
Hpy8I GTNNAC 5 cut(s) 437, 521, 554, 1223, 2385
Hpy99I CGWCG 1 cut(s) 669
HpyAV CCTTC 7 cut(s) 197, 494, 604, 619, 837, 2158, 2366
HpyCH4III ACNGT 7 cut(s) 665, 1182, 1602, 1731, 1976, 2079, 2196
HpyCH4IV ACGT 3 cut(s) 517, 946, 2254
HpyF10VI GCNNNNNNNGC 6 cut(s) 488, 560, 691, 766, 1558, 1616
HpySE526I ACGT 3 cut(s) 517, 946, 2254
Hsp92II CATG 9 cut(s) 316, 362, 619, 892, 934, 1027, 1258, 1565, 2001
HspAI GCGC 2 cut(s) 2223, 2242
KpnI GGTACC 1 cut(s) 227
Kzo9I GATC 7 cut(s) 278, 823, 870, 1112, 1879, 2257, 2278
LguI GCTCTTC 1 cut(s) 2251
LmnI GCTCC 5 cut(s) 346, 1011, 1072, 1474, 2013
Lsp1109I GCAGC 8 cut(s) 253, 756, 1240, 2017, 2201, 2212, 2240, 2526
LweI GCATC 7 cut(s) 286, 352, 529, 871, 2320, 2326, 2443
MabI ACCWGGT 1 cut(s) 1356
MaeII ACGT 3 cut(s) 517, 946, 2254
MaeIII GTNAC 5 cut(s) 442, 942, 1388, 1538, 1596
MalI GATC 7 cut(s) 280, 825, 872, 1114, 1881, 2259, 2280
MboI GATC 7 cut(s) 278, 823, 870, 1112, 1879, 2257, 2278
MfeI CAATTG 1 cut(s) 87
MflI RGATCY 2 cut(s) 1879, 2278
MhlI GDGCHC 5 cut(s) 484, 556, 1008, 2010, 2398
MlsI TGGCCA 1 cut(s) 2537
MluNI TGGCCA 1 cut(s) 2537
MlyI GAGTC 4 cut(s) 179, 1418, 1604, 1825
MmeI TCCRAC 3 cut(s) 1170, 1452, 2035
Mox20I TGGCCA 1 cut(s) 2537
Mph1103I ATGCAT 3 cut(s) 301, 314, 1029
MscI TGGCCA 1 cut(s) 2537
MslI CAYNNNNRTG 1 cut(s) 291
Msp20I TGGCCA 1 cut(s) 2537
MspA1I CMGCKG 2 cut(s) 1894, 2161
MspCI CTTAAG 1 cut(s) 598
MspR9I CCNGG 8 cut(s) 144, 182, 213, 478, 774, 991, 1358, 2088
MunI CAATTG 1 cut(s) 87
Mva1269I GAATGC 3 cut(s) 314, 1027, 2268
MvaI CCWGG 8 cut(s) 144, 182, 213, 478, 774, 991, 1358, 2088
MvnI CGCG 1 cut(s) 2410
MwoI GCNNNNNNNGC 6 cut(s) 488, 560, 691, 766, 1558, 1616
NdeII GATC 7 cut(s) 278, 823, 870, 1112, 1879, 2257, 2278
NheI GCTAGC 1 cut(s) 2266
NlaIII CATG 9 cut(s) 316, 362, 619, 892, 934, 1027, 1258, 1565, 2001
NlaIV GGNNCC 3 cut(s) 225, 482, 1795
NmeAIII GCCGAG 1 cut(s) 2475
NmuCI GTSAC 2 cut(s) 1388, 1596
NsiI ATGCAT 3 cut(s) 301, 314, 1029
NspI RCATGY 3 cut(s) 619, 1027, 2001
PaeR7I CTCGAG 2 cut(s) 620, 632
PagI TCATGA 1 cut(s) 930
PciI ACATGT 1 cut(s) 1997
PciSI GCTCTTC 1 cut(s) 2251
PctI GAATGC 3 cut(s) 314, 1027, 2268
PfeI GAWTC 9 cut(s) 283, 469, 572, 637, 680, 714, 1160, 1697, 1775
PflMI CCANNNNNTGG 1 cut(s) 2533
PfoI TCCNGGA 1 cut(s) 180
PkrI GCNGC 9 cut(s) 268, 771, 1230, 2032, 2191, 2227, 2230, 2412, 2516
PleI GAGTC 4 cut(s) 179, 1417, 1603, 1824
PpsI GAGTC 4 cut(s) 179, 1417, 1603, 1824
Ppu21I YACGTR 3 cut(s) 518, 947, 2255
PpuMI RGGWCCY 2 cut(s) 776, 1354
PscI ACATGT 1 cut(s) 1997
PshAI GACNNNNGTC 1 cut(s) 526
PshBI ATTAAT 2 cut(s) 323, 1872
Psp124BI GAGCTC 2 cut(s) 1008, 2010
Psp5II RGGWCCY 2 cut(s) 776, 1354
Psp6I CCWGG 8 cut(s) 142, 180, 211, 476, 772, 989, 1356, 2086
PspEI GGTNACC 1 cut(s) 1538
PspFI CCCAGC 1 cut(s) 1890
PspGI CCWGG 8 cut(s) 142, 180, 211, 476, 772, 989, 1356, 2086
PspN4I GGNNCC 3 cut(s) 225, 482, 1795
PspOMI GGGCCC 1 cut(s) 480
PspPI GGNCC 5 cut(s) 4, 480, 481, 776, 1354
PspPPI RGGWCCY 2 cut(s) 776, 1354
PstI CTGCAG 3 cut(s) 1309, 1582, 2230
PstNI CAGNNNCTG 2 cut(s) 779, 1739
PsuI RGATCY 2 cut(s) 1879, 2278
PvuII CAGCTG 2 cut(s) 1894, 2161
RsaI GTAC 6 cut(s) 102, 225, 659, 1362, 1425, 1764
RsaNI GTAC 6 cut(s) 101, 224, 658, 1361, 1424, 1763
RseI CAYNNNNRTG 1 cut(s) 291
SacI GAGCTC 2 cut(s) 1008, 2010
SapI GCTCTTC 1 cut(s) 2251
SatI GCNGC 9 cut(s) 267, 770, 1229, 2031, 2190, 2226, 2229, 2411, 2515
Sau3AI GATC 7 cut(s) 278, 823, 870, 1112, 1879, 2257, 2278
Sau96I GGNCC 5 cut(s) 4, 480, 481, 776, 1354
SchI GAGTC 4 cut(s) 179, 1418, 1604, 1825
ScrFI CCNGG 8 cut(s) 144, 182, 213, 478, 774, 991, 1358, 2088
SduI GDGCHC 5 cut(s) 484, 556, 1008, 2010, 2398
SexAI ACCWGGT 1 cut(s) 1356
SfaNI GCATC 7 cut(s) 286, 352, 529, 871, 2320, 2326, 2443
SfcI CTRYAG 4 cut(s) 1305, 1578, 1727, 2226
Sfr274I CTCGAG 2 cut(s) 620, 632
SinI GGWCC 3 cut(s) 4, 776, 1354
SlaI CTCGAG 2 cut(s) 620, 632
SmiMI CAYNNNNRTG 1 cut(s) 291
SmlI CTYRAG 5 cut(s) 598, 620, 632, 1053, 2003
SmoI CTYRAG 5 cut(s) 598, 620, 632, 1053, 2003
SnaBI TACGTA 2 cut(s) 518, 947
SsiI CCGC 3 cut(s) 113, 1829, 2410
SstI GAGCTC 2 cut(s) 1008, 2010
StyD4I CCNGG 8 cut(s) 142, 180, 211, 476, 772, 989, 1356, 2086
StyI CCWWGG 2 cut(s) 1789, 2532
TaaI ACNGT 7 cut(s) 665, 1182, 1602, 1731, 1976, 2079, 2196
TaiI ACGT 3 cut(s) 520, 949, 2257
TaqII GACCGA 1 cut(s) 657
TatI WGTACW 1 cut(s) 657
TauI GCSGC 1 cut(s) 2413
TfiI GAWTC 9 cut(s) 283, 469, 572, 637, 680, 714, 1160, 1697, 1775
TscAI CASTG 5 cut(s) 1141, 1393, 1605, 2118, 2199
TseFI GTSAC 2 cut(s) 1388, 1596
TseI GCWGC 8 cut(s) 266, 769, 1228, 2030, 2189, 2225, 2228, 2514
Tsp45I GTSAC 2 cut(s) 1388, 1596
TspGWI ACGGA 1 cut(s) 2054
TspRI CASTG 5 cut(s) 1141, 1393, 1605, 2118, 2199
Van91I CCANNNNNTGG 1 cut(s) 2533
Vha464I CTTAAG 1 cut(s) 598
VneI GTGCAC 1 cut(s) 552
VpaK11BI GGWCC 3 cut(s) 4, 776, 1354
VspI ATTAAT 2 cut(s) 323, 1872
XagI CCTNNNNNAGG 1 cut(s) 120
XapI RAATTY 2 cut(s) 545, 608
XbaI TCTAGA 1 cut(s) 1501
XceI RCATGY 3 cut(s) 619, 1027, 2001
XcmI CCANNNNNNNNNTGG 1 cut(s) 2146
XhoI CTCGAG 2 cut(s) 620, 632
XmiI GTMKAC 1 cut(s) 520
Zsp2I ATGCAT 3 cut(s) 301, 314, 1029
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.