FvH4_6g35560

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001075
Physical Location & Seq
Reverse (-)
28053439 .. 28057478
4040 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g35560.t17

Sequence Viewer

Length: 1383 bp
ATGGAGTACATCAACCAAGAAATCCTTGGTCAGATGGTCCGGAGTATATCACAGTGTCCTATTGAGCCTAACACAAATTTCACTTACGAGGTTATATTTTCTGATGAAGAAGGAACACTATGGTGGCATGCGCATAGTGAATGGACCAGAGCTAGTGTCCATGGTGCCATTGTTGTTAAGCCCTTAGAGGAGACAGGTTTTCCATTTCTGGAGCCCGATGGAGAAGAAATAATTATATTTGGATCTTGGTATCTTATTGAACGTCTGAATGAGGTGGTTGCCGAAAAAATCAAAGAAGGTCATGACACTCCTCGGTCTGATTGTTACACCATTAATGGACAACCTGGGGATTTTGGCTGGTGCTCAAATGACAGTACACATCGTTGGCAAGTGGAGTATAACAAGACTTATCTTCTTCGTATTATCAATGCTGTGATGAATGCAGAACTTTACTTTGCCATTGCTGAACATACACTCACTGTTGTTGGTATGGATGGATCCTATGTTAAACCCATTGTGACCGATTTTATCATGATTTCCACCGGACAAACCATGGACATTCTGGTCACAGCCAACCAGCCTCTTGGCCGATACTACATGGCTGGAAGACAATTTGACACTGCTATAGACGCATTTCAAGCCTATGACAAAACAAATGTGACAGCAATTTTGGAGTATAAAGGAAATTACTCCGACCTGGTATACCCAATCTTTCCAACCACCCTTCCTGCGTTTGAGGAAATTTTACCTGCAGTAAACTTCACAAGTCGCCTCAAAAGCTTAGCAAGCATAGACCACCCAACAAATGTGCCAAACAATATAACAACCATAATGTATATCACGGTTGAGATGAATAATGGCACCTTCATTAATGGTGGTGAAGAGATCAAGAGTGGCCTTGTATCCATTTTAAACAATCTAAGTTGGGTTAATCCATCAACAGATGTGCTACTTGACTACTACAGGAACATGAGTGGATTTTATACTGCAGATTTTCCTGATTATCCACCATCAATGTTTGACTTCATAGCCGACGATCAGCCTCCTGATAGAACTATTGCAACTGTCAAAGCAACTAGTGTCAAGGTGTTAGAGTACAATGAAGAGGTGGAAGTTGTGTCTCAGGGTACTAATGTGCTTGATGGATCTGAGGATCATCCAATGCACTTGCATGGTTATAGCTTTTATGTAGTCGGATCAGGCTTTGGAAATTTTGACAACGAGACTGACCCTAAAGGATACAATTTGATTGATCCACCAAAGTTAACTACTGTTTCACTCCCAAAGAAAGGGTGGGTTGCTATCAGATTCAAAGCCAGTAATCCAGGGCCGGGGTCTGGTTATGGCACTGTCATTTGGATCGACATTTCGGTTGGGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

461

Amino Acids

51.55

Weight (kDa)

4.52

Isoelectric Point (pI)

30.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 14 - 62 1.7e-11 Multicopper oxidase
Cu-oxidase PF00394 77 - 229 3.1e-34 Multicopper oxidase
Cu-oxidase_2 PF07731 332 - 444 3.8e-25 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 563
Acc16I TGCGCA 1 cut(s) 132
Acc36I ACCTGC 1 cut(s) 757
AccB1I GGYRCC 2 cut(s) 164, 860
AccI GTMKAC 1 cut(s) 702
AccIII TCCGGA 1 cut(s) 39
AclWI GGATC 8 cut(s) 250, 492, 505, 1153, 1161, 1204, 1247, 1367
AcoI YGGCCR 1 cut(s) 586
AcsI RAATTY 3 cut(s) 76, 741, 1210
AfaI GTAC 4 cut(s) 8, 376, 1097, 1129
AfiI CCNNNNNNNGG 3 cut(s) 1289, 1331, 1337
AgsI TTSAA 3 cut(s) 260, 638, 1312
AhlI ACTAGT 1 cut(s) 1076
AjnI CCWGG 3 cut(s) 343, 696, 1324
AleI CACNNNNGTG 1 cut(s) 121
AluBI AGCT 3 cut(s) 152, 780, 1182
AluI AGCT 3 cut(s) 152, 780, 1182
Alw21I GWGCWC 1 cut(s) 365
Alw26I GTCTC 3 cut(s) 185, 1125, 1217
AlwI GGATC 8 cut(s) 250, 492, 505, 1153, 1161, 1204, 1247, 1367
Aor13HI TCCGGA 1 cut(s) 39
AoxI GGCC 3 cut(s) 586, 895, 1328
ApoI RAATTY 3 cut(s) 76, 741, 1210
ArsI GACNNNNNNTTYG 2 cut(s) 652, 684
AseI ATTAAT 2 cut(s) 333, 870
AspLEI GCGC 1 cut(s) 133
AspS9I GGNCC 3 cut(s) 37, 144, 1328
AsuC2I CCSGG 1 cut(s) 1332
AsuHPI GGTGA 1 cut(s) 890
AvaII GGWCC 2 cut(s) 37, 144
BaeI ACNNNNGTAYC 2 cut(s) 1119, 1152
BamHI GGATCC 1 cut(s) 497
BanI GGYRCC 2 cut(s) 164, 860
BanII GRGCYC 1 cut(s) 216
BbsI GAAGAC 1 cut(s) 613
Bbv12I GWGCWC 1 cut(s) 365
BccI CCATC 6 cut(s) 28, 212, 488, 943, 1018, 1136
BciT130I CCWGG 3 cut(s) 345, 698, 1326
BciVI GTATCC 2 cut(s) 913, 1232
BcnI CCSGG 1 cut(s) 1332
BcoDI GTCTC 3 cut(s) 185, 1125, 1217
BcuI ACTAGT 1 cut(s) 1076
BfaI CTAG 2 cut(s) 153, 1077
BfmI CTRYAG 4 cut(s) 624, 750, 961, 987
BfuAI ACCTGC 1 cut(s) 757
BfuI GTATCC 2 cut(s) 913, 1232
BlpI GCTNAGC 1 cut(s) 781
Bme1390I CCNGG 4 cut(s) 345, 698, 1326, 1332
Bme18I GGWCC 2 cut(s) 37, 144
BmgT120I GGNCC 3 cut(s) 37, 144, 1328
BmiI GGNNCC 4 cut(s) 166, 213, 499, 862
BmrFI CCNGG 4 cut(s) 345, 698, 1326, 1332
BpiI GAAGAC 1 cut(s) 613
BpmI CTGGAG 1 cut(s) 230
Bpu1102I GCTNAGC 1 cut(s) 781
BpuMI CCSGG 1 cut(s) 1332
BsaJI CCNNGG 7 cut(s) 25, 160, 311, 344, 552, 1325, 1331
BsaWI WCCGGW 2 cut(s) 39, 542
Bsc4I CCNNNNNNNGG 3 cut(s) 1289, 1331, 1337
Bse1I ACTGG 1 cut(s) 1317
Bse3DI GCAATG 1 cut(s) 459
BseAI TCCGGA 1 cut(s) 39
BseBI CCWGG 3 cut(s) 345, 698, 1326
BseDI CCNNGG 7 cut(s) 25, 160, 311, 344, 552, 1325, 1331
BseGI GGATG 2 cut(s) 499, 1156
BseLI CCNNNNNNNGG 3 cut(s) 1289, 1331, 1337
BseMI GCAATG 1 cut(s) 459
BseMII CTCAG 2 cut(s) 1136, 1140
BseNI ACTGG 1 cut(s) 1317
BseRI GAGGAG 2 cut(s) 203, 300
BshFI GGCC 3 cut(s) 588, 897, 1330
BshNI GGYRCC 2 cut(s) 164, 860
BsiHKAI GWGCWC 1 cut(s) 365
BsiSI CCGG 3 cut(s) 40, 543, 1331
BslI CCNNNNNNNGG 3 cut(s) 1289, 1331, 1337
BsmAI GTCTC 3 cut(s) 185, 1125, 1217
BsmI GAATGC 1 cut(s) 445
BsnI GGCC 3 cut(s) 588, 897, 1330
Bsp1286I GDGCHC 2 cut(s) 216, 365
Bsp13I TCCGGA 1 cut(s) 39
Bsp143I GATC 9 cut(s) 242, 497, 885, 1036, 1145, 1153, 1196, 1252, 1359
Bsp1720I GCTNAGC 1 cut(s) 781
Bsp19I CCATGG 2 cut(s) 160, 552
BspANI GGCC 3 cut(s) 588, 897, 1330
BspCNI CTCAG 2 cut(s) 1135, 1141
BspEI TCCGGA 1 cut(s) 39
BspHI TCATGA 2 cut(s) 301, 531
BspLI GGNNCC 4 cut(s) 166, 213, 499, 862
BspMAI CTGCAG 2 cut(s) 754, 991
BspMI ACCTGC 1 cut(s) 757
BspPI GGATC 8 cut(s) 250, 492, 505, 1153, 1161, 1204, 1247, 1367
BspT107I GGYRCC 2 cut(s) 164, 860
BsrDI GCAATG 1 cut(s) 459
BsrI ACTGG 1 cut(s) 1317
BssECI CCNNGG 7 cut(s) 25, 160, 311, 344, 552, 1325, 1331
BssMI GATC 9 cut(s) 242, 497, 885, 1036, 1145, 1153, 1196, 1252, 1359
BssNAI GTATAC 1 cut(s) 703
BssT1I CCWWGG 3 cut(s) 25, 160, 552
Bst1107I GTATAC 1 cut(s) 703
Bst2UI CCWGG 3 cut(s) 345, 698, 1326
Bst4CI ACNGT 7 cut(s) 54, 374, 481, 844, 1066, 1273, 1351
Bst6I CTCTTC 2 cut(s) 876, 1098
BstC8I GCNNGC 2 cut(s) 129, 787
BstDEI CTNAG 5 cut(s) 184, 781, 920, 1122, 1149
BstDSI CCRYGG 2 cut(s) 160, 552
BstF5I GGATG 2 cut(s) 499, 1156
BstHHI GCGC 1 cut(s) 133
BstKTI GATC 9 cut(s) 245, 500, 888, 1039, 1148, 1156, 1199, 1255, 1362
BstMAI GTCTC 3 cut(s) 185, 1125, 1217
BstMBI GATC 9 cut(s) 242, 497, 885, 1036, 1145, 1153, 1196, 1252, 1359
BstMWI GCNNNNNNNGC 4 cut(s) 629, 638, 777, 786
BstNI CCWGG 3 cut(s) 345, 698, 1326
BstNSI RCATGY 1 cut(s) 131
BstSCI CCNGG 4 cut(s) 343, 696, 1324, 1330
BstSFI CTRYAG 4 cut(s) 624, 750, 961, 987
BstV2I GAAGAC 1 cut(s) 613
BstX2I RGATCY 3 cut(s) 242, 497, 1145
BstXI CCANNNNNNTGG 1 cut(s) 584
BstYI RGATCY 3 cut(s) 242, 497, 1145
BstZ17I GTATAC 1 cut(s) 703
BsuI GTATCC 2 cut(s) 913, 1232
BsuRI GGCC 3 cut(s) 588, 897, 1330
BtgI CCRYGG 2 cut(s) 160, 552
BtsCI GGATG 2 cut(s) 499, 1156
BtsI GCAGTG 1 cut(s) 618
BtsIMutI CAGTG 4 cut(s) 59, 477, 618, 1347
BveI ACCTGC 1 cut(s) 757
Cac8I GCNNGC 2 cut(s) 129, 787
CciI TCATGA 2 cut(s) 301, 531
CfoI GCGC 1 cut(s) 133
Cfr13I GGNCC 3 cut(s) 37, 144, 1328
CseI GACGC 1 cut(s) 638
CsiI ACCWGGT 1 cut(s) 696
Csp6I GTAC 4 cut(s) 7, 375, 1096, 1128
CviAII CATG 8 cut(s) 128, 161, 302, 532, 553, 598, 970, 1172
CviQI GTAC 4 cut(s) 7, 375, 1096, 1128
DdeI CTNAG 5 cut(s) 184, 781, 920, 1122, 1149
DpnI GATC 9 cut(s) 244, 499, 887, 1038, 1147, 1155, 1198, 1254, 1361
DpnII GATC 9 cut(s) 242, 497, 885, 1036, 1145, 1153, 1196, 1252, 1359
DraI TTTAAA 1 cut(s) 912
DrdI GACNNNNNNGTC 1 cut(s) 563
DseDI GACNNNNNNGTC 1 cut(s) 563
EaeI YGGCCR 1 cut(s) 586
Eam1104I CTCTTC 2 cut(s) 876, 1098
EarI CTCTTC 2 cut(s) 876, 1098
Eco130I CCWWGG 3 cut(s) 25, 160, 552
Eco24I GRGCYC 1 cut(s) 216
Eco47I GGWCC 2 cut(s) 37, 144
EcoRII CCWGG 3 cut(s) 343, 696, 1324
EcoT14I CCWWGG 3 cut(s) 25, 160, 552
EcoT38I GRGCYC 1 cut(s) 216
ErhI CCWWGG 3 cut(s) 25, 160, 552
FaeI CATG 8 cut(s) 131, 164, 305, 535, 556, 601, 973, 1175
FalI AAGNNNNNCTT 2 cut(s) 9, 41
FatI CATG 8 cut(s) 127, 160, 301, 531, 552, 597, 969, 1171
FblI GTMKAC 1 cut(s) 702
FokI GGATG 2 cut(s) 506, 1143
FriOI GRGCYC 1 cut(s) 216
FspAI RTGCGCAY 1 cut(s) 132
FspBI CTAG 2 cut(s) 153, 1077
FspI TGCGCA 1 cut(s) 132
GlaI GCGC 1 cut(s) 132
GsuI CTGGAG 1 cut(s) 230
HaeIII GGCC 3 cut(s) 588, 897, 1330
HapII CCGG 3 cut(s) 40, 543, 1331
HgaI GACGC 1 cut(s) 638
HhaI GCGC 1 cut(s) 133
Hin1II CATG 8 cut(s) 131, 164, 305, 535, 556, 601, 973, 1175
Hin6I GCGC 1 cut(s) 131
HinP1I GCGC 1 cut(s) 131
HincII GTYRAC 1 cut(s) 1266
HindII GTYRAC 1 cut(s) 1266
HindIII AAGCTT 1 cut(s) 778
HinfI GANTC 1 cut(s) 1308
HpaI GTTAAC 1 cut(s) 1266
HpaII CCGG 3 cut(s) 40, 543, 1331
HphI GGTGA 1 cut(s) 890
Hpy166II GTNNAC 4 cut(s) 377, 703, 757, 1266
Hpy188I TCNGA 8 cut(s) 33, 103, 267, 319, 694, 1150, 1196, 1307
Hpy188III TCNNGA 7 cut(s) 40, 209, 302, 532, 889, 998, 1046
Hpy8I GTNNAC 4 cut(s) 377, 703, 757, 1266
Hpy99I CGWCG 1 cut(s) 1037
HpyAV CCTTC 4 cut(s) 104, 290, 734, 874
HpyCH4III ACNGT 7 cut(s) 54, 374, 481, 844, 1066, 1273, 1351
HpyCH4IV ACGT 1 cut(s) 262
HpyCH4V TGCA 6 cut(s) 443, 752, 989, 1061, 1165, 1171
HpyF10VI GCNNNNNNNGC 4 cut(s) 629, 638, 777, 786
HpyF3I CTNAG 5 cut(s) 184, 781, 920, 1122, 1149
HpySE526I ACGT 1 cut(s) 262
Hsp92II CATG 8 cut(s) 131, 164, 305, 535, 556, 601, 973, 1175
HspAI GCGC 1 cut(s) 131
Kpn2I TCCGGA 1 cut(s) 39
KspAI GTTAAC 1 cut(s) 1266
Kzo9I GATC 9 cut(s) 242, 497, 885, 1036, 1145, 1153, 1196, 1252, 1359
LmnI GCTCC 1 cut(s) 211
MabI ACCWGGT 1 cut(s) 696
MaeI CTAG 2 cut(s) 153, 1077
MaeII ACGT 1 cut(s) 262
MaeIII GTNAC 4 cut(s) 323, 517, 565, 658
MalI GATC 9 cut(s) 244, 499, 887, 1038, 1147, 1155, 1198, 1254, 1361
MboI GATC 9 cut(s) 242, 497, 885, 1036, 1145, 1153, 1196, 1252, 1359
MboII GAAGA 7 cut(s) 119, 236, 404, 407, 618, 893, 1115
MflI RGATCY 3 cut(s) 242, 497, 1145
MhlI GDGCHC 2 cut(s) 216, 365
MluCI AATT 8 cut(s) 76, 231, 611, 666, 685, 741, 1210, 1243
MmeI TCCRAC 3 cut(s) 717, 740, 1174
MroI TCCGGA 1 cut(s) 39
MseI TTAA 7 cut(s) 177, 333, 507, 870, 911, 930, 1265
MslI CAYNNNNRTG 2 cut(s) 121, 1170
MspI CCGG 3 cut(s) 40, 543, 1331
MspR9I CCNGG 4 cut(s) 345, 698, 1326, 1332
Mva1269I GAATGC 1 cut(s) 445
MvaI CCWGG 3 cut(s) 345, 698, 1326
MwoI GCNNNNNNNGC 4 cut(s) 629, 638, 777, 786
NciI CCSGG 1 cut(s) 1332
NcoI CCATGG 2 cut(s) 160, 552
NdeII GATC 9 cut(s) 242, 497, 885, 1036, 1145, 1153, 1196, 1252, 1359
NlaIII CATG 8 cut(s) 131, 164, 305, 535, 556, 601, 973, 1175
NlaIV GGNNCC 4 cut(s) 166, 213, 499, 862
NmuCI GTSAC 3 cut(s) 517, 565, 658
NsbI TGCGCA 1 cut(s) 132
NspI RCATGY 1 cut(s) 131
OliI CACNNNNGTG 1 cut(s) 121
PaeI GCATGC 1 cut(s) 131
PagI TCATGA 2 cut(s) 301, 531
PctI GAATGC 1 cut(s) 445
PfeI GAWTC 1 cut(s) 1308
PshBI ATTAAT 2 cut(s) 333, 870
Psp6I CCWGG 3 cut(s) 343, 696, 1324
PspGI CCWGG 3 cut(s) 343, 696, 1324
PspN4I GGNNCC 4 cut(s) 166, 213, 499, 862
PspPI GGNCC 3 cut(s) 37, 144, 1328
PstI CTGCAG 2 cut(s) 754, 991
PsuI RGATCY 3 cut(s) 242, 497, 1145
RsaI GTAC 4 cut(s) 8, 376, 1097, 1129
RsaNI GTAC 4 cut(s) 7, 375, 1096, 1128
RseI CAYNNNNRTG 2 cut(s) 121, 1170
SaqAI TTAA 7 cut(s) 177, 333, 507, 870, 911, 930, 1265
Sau3AI GATC 9 cut(s) 242, 497, 885, 1036, 1145, 1153, 1196, 1252, 1359
Sau96I GGNCC 3 cut(s) 37, 144, 1328
ScrFI CCNGG 4 cut(s) 345, 698, 1326, 1332
SduI GDGCHC 2 cut(s) 216, 365
SexAI ACCWGGT 1 cut(s) 696
SfcI CTRYAG 4 cut(s) 624, 750, 961, 987
SinI GGWCC 2 cut(s) 37, 144
SmiMI CAYNNNNRTG 2 cut(s) 121, 1170
SpeI ACTAGT 1 cut(s) 1076
SphI GCATGC 1 cut(s) 131
Sse9I AATT 8 cut(s) 76, 231, 611, 666, 685, 741, 1210, 1243
SspMI CTAG 2 cut(s) 153, 1077
StyD4I CCNGG 4 cut(s) 343, 696, 1324, 1330
StyI CCWWGG 3 cut(s) 25, 160, 552
TaaI ACNGT 7 cut(s) 54, 374, 481, 844, 1066, 1273, 1351
TaiI ACGT 1 cut(s) 265
TaqI TCGA 1 cut(s) 1362
TaqII GACCGA 2 cut(s) 303, 536
TasI AATT 8 cut(s) 76, 231, 611, 666, 685, 741, 1210, 1243
TatI WGTACW 3 cut(s) 6, 374, 1095
TfiI GAWTC 1 cut(s) 1308
Tru1I TTAA 7 cut(s) 177, 333, 507, 870, 911, 930, 1265
Tru9I TTAA 7 cut(s) 177, 333, 507, 870, 911, 930, 1265
TscAI CASTG 4 cut(s) 59, 484, 625, 1354
TseFI GTSAC 3 cut(s) 517, 565, 658
Tsp45I GTSAC 3 cut(s) 517, 565, 658
TspDTI ATGAA 6 cut(s) 120, 452, 856, 866, 1015, 1116
TspRI CASTG 4 cut(s) 59, 484, 625, 1354
VpaK11BI GGWCC 2 cut(s) 37, 144
VspI ATTAAT 2 cut(s) 333, 870
XapI RAATTY 3 cut(s) 76, 741, 1210
XceI RCATGY 1 cut(s) 131
XcmI CCANNNNNNNNNTGG 3 cut(s) 23, 559, 1290
XmiI GTMKAC 1 cut(s) 702
XspI CTAG 2 cut(s) 153, 1077
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.