Rw6G016980

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001075
Physical Location & Seq
Reverse (-)
33613354 .. 33624817
11464 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G016980.1

Sequence Viewer

Length: 1626 bp
ATGCTGGTAGTGAATGGCAGTTTTCCGGGGCCAGTCATTCGTGTGCAAAAGGGGGATACCGTCTTTGTCAATGTTCACAATCAAGGAGATTATGGACTTACTATTCACTGGCATGGAGTACATCAACCAAGAAATCCATGGTCAGATGGTCCTGAATATATTACACAATGTGCCATCAAACCTGGCTCAAATTTTACATACGAGGTTATATTTTCTGATGAGGAAGGAACACTTTGGTGGCATGCTCATAGTGAATGGACGAGAGCTACTGTCCATGGTGCCATTGTTATTATGCCTTTAAATAATACGAGTTTTCCGTTTCCTGAACCTGATGGACAAGAAATCATTATACTCAGTTCTTGGTATAACAGTACTGAAGATGTGAGTGACATAGTTGCTGAAGCCCTTCAAGATGGAGGTGATACTCCCGACTCTGATTGCTACACCATCAATGGACAACCAGGAGATTTTCTCCCATGCTCAAATGATAGTACATACCATTGGCAGGTGGAGTATGGTAAGACCTATCTTCTTCGTCTTGTCAATGCAGTGATGAATGCAGAACTGTTCTTTGCAATTGCTGAACATAGCATCACCGTTGTTGGTATCGACGCATCCTATGTGAAACCCATCGTGACCGATTATATCATGATTAGCGCTGGACAAACAATGGATATTTTGATCACCGCAAACCAATCCCCTGGCGCTTACTATATGGCTACTAGACAATATAACACCGTGAGGAAAAATATTGATGACTACGATAATTCAAATGTTACTGCAATTCTTCAGTACAAAGAGAAGTACACACCCTTGATGGACCCAGTTTTTCCAAGCATCCTCCCTACTTATTTTGATATAGTATCAGGAAGAAAGTTCACAAGGCGTATTAAGAGCTTAGCAAGCATAGAGCACCCGACAAATGTGCCGAAGAATATATCTACTAGAATGTTTATAACAGCTGCTTCAAATTATGGTTTCATTAATCGTTCTGGCGAGTATGAAACTGGTGTTACTACTAGTCTAAACAATTTAAGTTGGGTTAATCCAGAAACAGATGTGCTACTTTCCTACTACAGGAACATAACAGGGTTTTACACGCCAGACTTTCCTGATTATCCACCATTTATATTTGACTTTGTGTCAGAAGATTTTGCTCCTGATACTGTCCCAACAATAAAGGGAACCAAGGTGAAGGTGTTAGAATACGATGAAGAGGTTGAAATAGTGTTTCAGGGTACTGATCTCATGAGAGCATCTGAGGATCATCCAATGCACATGCATGGTTATAGTTTTTATGTGGTTGGATCAGGAACTGGAAATTTTGACAATGAGACAGACCCCAAAGCCTACAATTTATTTGATCCTCCAAAGATGAATACTGTTTCGGTCCCAAAAGTAGGATGGGTAGCTATCAGATTCAAAGCAAGTAACCCCGGAGTTTGGTTCTGGCATTGTCATTTTGATCGACATTTGACTTGGGGTATGAGCTTCGTGATAATAGTTAAAGATGGAGGTACGCCAGAAACGAGCATACGTAAGCCACCTCCAAACATGCCTCAATGTACTAGCTCATCTACTATTAAGCTGCAACCTTTCCATGATTTCAGCAGAACAGGTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

541

Amino Acids

61.0

Weight (kDa)

5.08

Isoelectric Point (pI)

36.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 2 - 99 7e-38 Multicopper oxidase
Cu-oxidase PF00394 115 - 267 1.5e-36 Multicopper oxidase
Cu-oxidase_2 PF07731 371 - 504 1.8e-39 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 956
AarI CACCTGC 1 cut(s) 496
Acc36I ACCTGC 1 cut(s) 496
AccB1I GGYRCC 1 cut(s) 278
AciI CCGC 1 cut(s) 687
AclWI GGATC 3 cut(s) 1272, 1315, 1358
AcsI RAATTY 2 cut(s) 190, 1321
AcuI CTGAAG 3 cut(s) 396, 420, 773
AdeI CACNNNGTG 1 cut(s) 170
AfaI GTAC 8 cut(s) 120, 373, 493, 794, 806, 1240, 1519, 1567
AfeI AGCGCT 1 cut(s) 658
AfiI CCNNNNNNNGG 4 cut(s) 505, 1077, 1400, 1443
AgsI TTSAA 5 cut(s) 410, 771, 969, 1223, 1423
AhdI GACNNNNNGTC 1 cut(s) 1141
AhlI ACTAGT 1 cut(s) 1019
AjnI CCWGG 3 cut(s) 181, 460, 700
AleI CACNNNNGTG 1 cut(s) 235
AluBI AGCT 7 cut(s) 266, 897, 962, 1412, 1491, 1572, 1588
AluI AGCT 7 cut(s) 266, 897, 962, 1412, 1491, 1572, 1588
Alw21I GWGCWC 1 cut(s) 915
Alw26I GTCTC 1 cut(s) 1328
AlwI GGATC 3 cut(s) 1272, 1315, 1358
AlwNI CAGNNNCTG 1 cut(s) 1316
Aor51HI AGCGCT 1 cut(s) 658
AoxI GGCC 1 cut(s) 29
ApeKI GCWGC 2 cut(s) 962, 1588
ApoI RAATTY 2 cut(s) 190, 1321
AseI ATTAAT 1 cut(s) 984
Asp700I GAANNNNTTC 1 cut(s) 405
AspLEI GCGC 2 cut(s) 659, 707
AspS9I GGNCC 4 cut(s) 29, 149, 820, 1390
AsuC2I CCSGG 2 cut(s) 27, 1437
AsuHPI GGTGA 4 cut(s) 431, 586, 676, 1204
AvaII GGWCC 3 cut(s) 149, 820, 1390
BanI GGYRCC 1 cut(s) 278
Bbv12I GWGCWC 1 cut(s) 915
BbvI GCAGC 2 cut(s) 949, 1575
BccI CCATC 9 cut(s) 140, 182, 326, 407, 455, 638, 811, 1398, 1505
BcgI CGANNNNNNTGC 2 cut(s) 907, 941
BciT130I CCWGG 3 cut(s) 183, 462, 702
BciVI GTATCC 1 cut(s) 49
BclI TGATCA 1 cut(s) 681
BcnI CCSGG 2 cut(s) 27, 1437
BcoDI GTCTC 1 cut(s) 1328
BcuI ACTAGT 1 cut(s) 1019
BfaI CTAG 4 cut(s) 723, 945, 1020, 1569
BfmI CTRYAG 1 cut(s) 1075
BfoI RGCGCY 2 cut(s) 660, 708
BfuAI ACCTGC 1 cut(s) 496
BfuI GTATCC 1 cut(s) 49
BisI GCNGC 2 cut(s) 963, 1589
BlpI GCTNAGC 1 cut(s) 898
BlsI GCNGC 2 cut(s) 964, 1590
BmcAI AGTACT 1 cut(s) 373
Bme1390I CCNGG 5 cut(s) 27, 183, 462, 702, 1437
Bme18I GGWCC 3 cut(s) 149, 820, 1390
BmeRI GACNNNNNGTC 1 cut(s) 1141
BmgT120I GGNCC 4 cut(s) 29, 149, 820, 1390
BmiI GGNNCC 5 cut(s) 30, 280, 822, 1186, 1392
BmrFI CCNGG 5 cut(s) 27, 183, 462, 702, 1437
BmrI ACTGGG 1 cut(s) 818
BmsI GCATC 4 cut(s) 600, 623, 846, 1265
BmuI ACTGGG 1 cut(s) 818
BplI GAGNNNNNCTC 2 cut(s) 456, 488
Bpu1102I GCTNAGC 1 cut(s) 898
BpuMI CCSGG 2 cut(s) 27, 1437
BsaAI YACGTR 1 cut(s) 1538
BsaJI CCNNGG 6 cut(s) 26, 137, 274, 700, 1188, 1435
Bsc4I CCNNNNNNNGG 4 cut(s) 505, 1077, 1400, 1443
Bse1I ACTGG 5 cut(s) 32, 113, 824, 1012, 1321
BseBI CCWGG 3 cut(s) 183, 462, 702
BseDI CCNNGG 6 cut(s) 26, 137, 274, 700, 1188, 1435
BseGI GGATG 4 cut(s) 614, 837, 1267, 1409
BseLI CCNNNNNNNGG 4 cut(s) 505, 1077, 1400, 1443
BseMII CTCAG 2 cut(s) 367, 1251
BseNI ACTGG 5 cut(s) 32, 113, 824, 1012, 1321
BseXI GCAGC 2 cut(s) 949, 1575
BshFI GGCC 1 cut(s) 31
BshNI GGYRCC 1 cut(s) 278
BsiHKAI GWGCWC 1 cut(s) 915
BsiSI CCGG 2 cut(s) 26, 1437
BslFI GGGAC 2 cut(s) 1154, 1376
BslI CCNNNNNNNGG 4 cut(s) 505, 1077, 1400, 1443
BsmAI GTCTC 1 cut(s) 1328
BsmFI GGGAC 2 cut(s) 1154, 1376
BsmI GAATGC 1 cut(s) 562
BsnI GGCC 1 cut(s) 31
Bsp1286I GDGCHC 1 cut(s) 915
Bsp143I GATC 6 cut(s) 681, 1243, 1264, 1307, 1363, 1465
Bsp1720I GCTNAGC 1 cut(s) 898
Bsp19I CCATGG 2 cut(s) 137, 274
BspACI CCGC 1 cut(s) 687
BspANI GGCC 1 cut(s) 31
BspCNI CTCAG 2 cut(s) 366, 1252
BspHI TCATGA 2 cut(s) 648, 1248
BspLI GGNNCC 5 cut(s) 30, 280, 822, 1186, 1392
BspMI ACCTGC 1 cut(s) 496
BspPI GGATC 3 cut(s) 1272, 1315, 1358
BspT107I GGYRCC 1 cut(s) 278
BsrI ACTGG 5 cut(s) 32, 113, 824, 1012, 1321
BssECI CCNNGG 6 cut(s) 26, 137, 274, 700, 1188, 1435
BssMI GATC 6 cut(s) 681, 1243, 1264, 1307, 1363, 1465
BssT1I CCWWGG 3 cut(s) 137, 274, 1188
Bst2UI CCWGG 3 cut(s) 183, 462, 702
Bst4CI ACNGT 8 cut(s) 61, 271, 371, 567, 598, 739, 1168, 1384
Bst6I CTCTTC 1 cut(s) 1209
BstBAI YACGTR 1 cut(s) 1538
BstC8I GCNNGC 2 cut(s) 243, 904
BstDEI CTNAG 3 cut(s) 353, 898, 1260
BstDSI CCRYGG 2 cut(s) 137, 274
BstENI CCTNNNNNAGG 1 cut(s) 1075
BstF5I GGATG 4 cut(s) 614, 837, 1267, 1409
BstH2I RGCGCY 2 cut(s) 660, 708
BstHHI GCGC 2 cut(s) 659, 707
BstKTI GATC 6 cut(s) 684, 1246, 1267, 1310, 1366, 1468
BstMAI GTCTC 1 cut(s) 1328
BstMBI GATC 6 cut(s) 681, 1243, 1264, 1307, 1363, 1465
BstMWI GCNNNNNNNGC 1 cut(s) 903
BstNI CCWGG 3 cut(s) 183, 462, 702
BstNSI RCATGY 3 cut(s) 245, 1282, 1558
BstSCI CCNGG 5 cut(s) 25, 181, 460, 700, 1435
BstSFI CTRYAG 1 cut(s) 1075
BstSNI TACGTA 1 cut(s) 1538
BstV1I GCAGC 2 cut(s) 949, 1575
BstXI CCANNNNNNTGG 1 cut(s) 701
BsuI GTATCC 1 cut(s) 49
BsuRI GGCC 1 cut(s) 31
BtgI CCRYGG 2 cut(s) 137, 274
BtsCI GGATG 4 cut(s) 614, 837, 1267, 1409
BtsI GCAGTG 1 cut(s) 555
BtsIMutI CAGTG 2 cut(s) 106, 555
BveI ACCTGC 1 cut(s) 496
Cac8I GCNNGC 2 cut(s) 243, 904
CaiI CAGNNNCTG 1 cut(s) 1316
CciI TCATGA 2 cut(s) 648, 1248
CfoI GCGC 2 cut(s) 659, 707
Cfr13I GGNCC 4 cut(s) 29, 149, 820, 1390
CseI GACGC 1 cut(s) 620
Csp6I GTAC 8 cut(s) 119, 372, 492, 793, 805, 1239, 1518, 1566
CviQI GTAC 8 cut(s) 119, 372, 492, 793, 805, 1239, 1518, 1566
DdeI CTNAG 3 cut(s) 353, 898, 1260
DpnI GATC 6 cut(s) 683, 1245, 1266, 1309, 1365, 1467
DpnII GATC 6 cut(s) 681, 1243, 1264, 1307, 1363, 1465
DraI TTTAAA 1 cut(s) 300
DraIII CACNNNGTG 1 cut(s) 170
DriI GACNNNNNGTC 1 cut(s) 1141
Eam1104I CTCTTC 1 cut(s) 1209
Eam1105I GACNNNNNGTC 1 cut(s) 1141
EarI CTCTTC 1 cut(s) 1209
Eco105I TACGTA 1 cut(s) 1538
Eco130I CCWWGG 3 cut(s) 137, 274, 1188
Eco47I GGWCC 3 cut(s) 149, 820, 1390
Eco47III AGCGCT 1 cut(s) 658
Eco57I CTGAAG 3 cut(s) 396, 420, 773
EcoNI CCTNNNNNAGG 1 cut(s) 1075
EcoRII CCWGG 3 cut(s) 181, 460, 700
EcoT14I CCWWGG 3 cut(s) 137, 274, 1188
EcoT22I ATGCAT 1 cut(s) 1284
ErhI CCWWGG 3 cut(s) 137, 274, 1188
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FaqI GGGAC 2 cut(s) 1154, 1376
FbaI TGATCA 1 cut(s) 681
Fnu4HI GCNGC 2 cut(s) 963, 1589
FokI GGATG 4 cut(s) 601, 824, 1254, 1416
Fsp4HI GCNGC 2 cut(s) 963, 1589
FspBI CTAG 4 cut(s) 723, 945, 1020, 1569
GlaI GCGC 2 cut(s) 658, 706
GluI GCNGC 2 cut(s) 963, 1589
HaeII RGCGCY 2 cut(s) 660, 708
HaeIII GGCC 1 cut(s) 31
HapII CCGG 2 cut(s) 26, 1437
HgaI GACGC 1 cut(s) 620
HhaI GCGC 2 cut(s) 659, 707
Hin6I GCGC 2 cut(s) 657, 705
HinP1I GCGC 2 cut(s) 657, 705
HinfI GANTC 2 cut(s) 431, 1419
HpaII CCGG 2 cut(s) 26, 1437
HphI GGTGA 4 cut(s) 431, 586, 676, 1204
Hpy166II GTNNAC 3 cut(s) 76, 807, 879
Hpy188I TCNGA 6 cut(s) 145, 217, 436, 1147, 1261, 1418
Hpy8I GTNNAC 3 cut(s) 76, 807, 879
Hpy99I CGWCG 1 cut(s) 614
HpyAV CCTTC 3 cut(s) 218, 416, 1189
HpyCH4III ACNGT 8 cut(s) 61, 271, 371, 567, 598, 739, 1168, 1384
HpyCH4IV ACGT 1 cut(s) 1537
HpyCH4V TGCA 8 cut(s) 46, 548, 560, 575, 782, 1276, 1282, 1591
HpyF10VI GCNNNNNNNGC 1 cut(s) 903
HpyF3I CTNAG 3 cut(s) 353, 898, 1260
HpySE526I ACGT 1 cut(s) 1537
HspAI GCGC 2 cut(s) 657, 705
Ksp22I TGATCA 1 cut(s) 681
Kzo9I GATC 6 cut(s) 681, 1243, 1264, 1307, 1363, 1465
LmnI GCTCC 1 cut(s) 1162
Lsp1109I GCAGC 2 cut(s) 949, 1575
LweI GCATC 4 cut(s) 600, 623, 846, 1265
MaeI CTAG 4 cut(s) 723, 945, 1020, 1569
MaeII ACGT 1 cut(s) 1537
MaeIII GTNAC 5 cut(s) 386, 634, 775, 1012, 1430
MalI GATC 6 cut(s) 683, 1245, 1266, 1309, 1365, 1467
MboI GATC 6 cut(s) 681, 1243, 1264, 1307, 1363, 1465
MboII GAAGA 8 cut(s) 389, 521, 524, 779, 882, 943, 1160, 1226
MfeI CAATTG 1 cut(s) 576
MhlI GDGCHC 1 cut(s) 915
MluCI AATT 8 cut(s) 190, 576, 766, 783, 970, 1030, 1321, 1354
MlyI GAGTC 1 cut(s) 425
MmeI TCCRAC 1 cut(s) 1285
Mph1103I ATGCAT 1 cut(s) 1284
MroXI GAANNNNTTC 1 cut(s) 405
MseI TTAA 7 cut(s) 299, 891, 984, 1034, 1044, 1506, 1584
MslI CAYNNNNRTG 4 cut(s) 41, 111, 235, 1281
MspA1I CMGCKG 1 cut(s) 962
MspI CCGG 2 cut(s) 26, 1437
MspR9I CCNGG 5 cut(s) 27, 183, 462, 702, 1437
MunI CAATTG 1 cut(s) 576
Mva1269I GAATGC 1 cut(s) 562
MvaI CCWGG 3 cut(s) 183, 462, 702
MwoI GCNNNNNNNGC 1 cut(s) 903
NciI CCSGG 2 cut(s) 27, 1437
NcoI CCATGG 2 cut(s) 137, 274
NdeII GATC 6 cut(s) 681, 1243, 1264, 1307, 1363, 1465
NlaIV GGNNCC 5 cut(s) 30, 280, 822, 1186, 1392
NmuCI GTSAC 2 cut(s) 386, 634
NsiI ATGCAT 1 cut(s) 1284
NspI RCATGY 3 cut(s) 245, 1282, 1558
OliI CACNNNNGTG 1 cut(s) 235
PaeI GCATGC 1 cut(s) 245
PagI TCATGA 2 cut(s) 648, 1248
PaqCI CACCTGC 1 cut(s) 496
PcsI WCGNNNNNNNCGW 2 cut(s) 314, 1526
PctI GAATGC 1 cut(s) 562
PdmI GAANNNNTTC 1 cut(s) 405
PfeI GAWTC 1 cut(s) 1419
PkrI GCNGC 2 cut(s) 964, 1590
PleI GAGTC 1 cut(s) 425
PpsI GAGTC 1 cut(s) 425
Ppu21I YACGTR 1 cut(s) 1538
PshBI ATTAAT 1 cut(s) 984
PsiI TTATAA 1 cut(s) 956
Psp6I CCWGG 3 cut(s) 181, 460, 700
PspGI CCWGG 3 cut(s) 181, 460, 700
PspN4I GGNNCC 5 cut(s) 30, 280, 822, 1186, 1392
PspPI GGNCC 4 cut(s) 29, 149, 820, 1390
PstNI CAGNNNCTG 1 cut(s) 1316
PvuII CAGCTG 1 cut(s) 962
RsaI GTAC 8 cut(s) 120, 373, 493, 794, 806, 1240, 1519, 1567
RsaNI GTAC 8 cut(s) 119, 372, 492, 793, 805, 1239, 1518, 1566
RseI CAYNNNNRTG 4 cut(s) 41, 111, 235, 1281
SaqAI TTAA 7 cut(s) 299, 891, 984, 1034, 1044, 1506, 1584
SatI GCNGC 2 cut(s) 963, 1589
Sau3AI GATC 6 cut(s) 681, 1243, 1264, 1307, 1363, 1465
Sau96I GGNCC 4 cut(s) 29, 149, 820, 1390
ScaI AGTACT 1 cut(s) 373
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 5 cut(s) 27, 183, 462, 702, 1437
SduI GDGCHC 1 cut(s) 915
SfaNI GCATC 4 cut(s) 600, 623, 846, 1265
SfcI CTRYAG 1 cut(s) 1075
SinI GGWCC 3 cut(s) 149, 820, 1390
SmiMI CAYNNNNRTG 4 cut(s) 41, 111, 235, 1281
SnaBI TACGTA 1 cut(s) 1538
SpeI ACTAGT 1 cut(s) 1019
SphI GCATGC 1 cut(s) 245
Sse9I AATT 8 cut(s) 190, 576, 766, 783, 970, 1030, 1321, 1354
SsiI CCGC 1 cut(s) 687
SspI AATATT 1 cut(s) 751
SspMI CTAG 4 cut(s) 723, 945, 1020, 1569
StyD4I CCNGG 5 cut(s) 25, 181, 460, 700, 1435
StyI CCWWGG 3 cut(s) 137, 274, 1188
TaaI ACNGT 8 cut(s) 61, 271, 371, 567, 598, 739, 1168, 1384
TaiI ACGT 1 cut(s) 1540
TaqI TCGA 2 cut(s) 609, 1468
TaqII GACCGA 2 cut(s) 653, 1378
TasI AATT 8 cut(s) 190, 576, 766, 783, 970, 1030, 1321, 1354
TatI WGTACW 6 cut(s) 118, 371, 491, 792, 804, 1565
TfiI GAWTC 1 cut(s) 1419
Tru1I TTAA 7 cut(s) 299, 891, 984, 1034, 1044, 1506, 1584
Tru9I TTAA 7 cut(s) 299, 891, 984, 1034, 1044, 1506, 1584
TscAI CASTG 2 cut(s) 113, 555
TseFI GTSAC 2 cut(s) 386, 634
TseI GCWGC 2 cut(s) 962, 1588
Tsp45I GTSAC 2 cut(s) 386, 634
TspDTI ATGAA 5 cut(s) 569, 970, 1017, 1227, 1391
TspGWI ACGGA 1 cut(s) 306
TspRI CASTG 2 cut(s) 113, 555
VpaK11BI GGWCC 3 cut(s) 149, 820, 1390
VspI ATTAAT 1 cut(s) 984
XagI CCTNNNNNAGG 1 cut(s) 1075
XapI RAATTY 2 cut(s) 190, 1321
XceI RCATGY 3 cut(s) 245, 1282, 1558
XcmI CCANNNNNNNNNTGG 2 cut(s) 135, 1401
XmnI GAANNNNTTC 1 cut(s) 405
XspI CTAG 4 cut(s) 723, 945, 1020, 1569
ZrmI AGTACT 1 cut(s) 373
Zsp2I ATGCAT 1 cut(s) 1284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.