Rorug02G0398900

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001075
Physical Location & Seq
Forward (+)
50983899 .. 50984973
1075 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0398900.1

Sequence Viewer

Length: 315 bp
ATGAGCCTTGATGGTCTGCACTTTGCTGCATCAATATCGGTTAAAAGGAATACTCTGGCACAAATCTTAGCTGGGATTAATTTCGCTGAGCAGTACCCAGTCTATGCTTCTGAGAAGCCAGCCAGCAGTCTTGTTGAATTGTTCAAAAGCATGCACATATATGAAGAAGAAGCCGCCCCAGTTGAAAATGGAGATCTGGATCATGAGGAGTTAGAGGAGAATGGAGAAGATCAAGGTGAAGTACATACCATTGAGGAGGACTCAGACTCCATGAATGGTGTTGTTCTTGTGAATGGCACCCAGGAGGAAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

104

Amino Acids

11.44

Weight (kDa)

4.1

Isoelectric Point (pI)

63.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 296
AciI CCGC 1 cut(s) 174
AclWI GGATC 1 cut(s) 207
AfaI GTAC 2 cut(s) 95, 243
AgsI TTSAA 3 cut(s) 137, 145, 185
AjnI CCWGG 1 cut(s) 300
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
AlwI GGATC 1 cut(s) 207
ApeKI GCWGC 1 cut(s) 26
AseI ATTAAT 1 cut(s) 78
AsuHPI GGTGA 1 cut(s) 248
BanI GGYRCC 1 cut(s) 296
BbvI GCAGC 1 cut(s) 13
BccI CCATC 1 cut(s) 5
BcgI CGANNNNNNTGC 2 cut(s) 18, 52
BciT130I CCWGG 1 cut(s) 302
BglII AGATCT 1 cut(s) 193
BisI GCNGC 2 cut(s) 27, 174
BlpI GCTNAGC 1 cut(s) 87
BlsI GCNGC 2 cut(s) 28, 175
Bme1390I CCNGG 1 cut(s) 302
BmiI GGNNCC 1 cut(s) 298
BmrFI CCNGG 1 cut(s) 302
BmrI ACTGGG 2 cut(s) 92, 173
BmsI GCATC 1 cut(s) 38
BmuI ACTGGG 2 cut(s) 92, 173
BplI GAGNNNNNCTC 2 cut(s) 245, 277
Bpu1102I GCTNAGC 1 cut(s) 87
BsaBI GATNNNNATC 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 300
BsaXI ACNNNNNCTCC 3 cut(s) 251, 281, 296
Bse1I ACTGG 2 cut(s) 98, 179
Bse8I GATNNNNATC 1 cut(s) 198
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 1 cut(s) 300
BseJI GATNNNNATC 1 cut(s) 198
BseMII CTCAG 3 cut(s) 78, 102, 276
BseNI ACTGG 2 cut(s) 98, 179
BseRI GAGGAG 3 cut(s) 221, 230, 269
BseXI GCAGC 1 cut(s) 13
BseYI CCCAGC 1 cut(s) 71
BshNI GGYRCC 1 cut(s) 296
Bsp143I GATC 3 cut(s) 193, 199, 229
Bsp1720I GCTNAGC 1 cut(s) 87
BspACI CCGC 1 cut(s) 174
BspCNI CTCAG 3 cut(s) 79, 103, 275
BspHI TCATGA 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 298
BspPI GGATC 1 cut(s) 207
BspT107I GGYRCC 1 cut(s) 296
BsrI ACTGG 2 cut(s) 98, 179
BssECI CCNNGG 1 cut(s) 300
BssMI GATC 3 cut(s) 193, 199, 229
Bst2UI CCWGG 1 cut(s) 302
Bst6I CTCTTC 1 cut(s) 303
BstC8I GCNNGC 3 cut(s) 120, 124, 152
BstDEI CTNAG 4 cut(s) 67, 87, 111, 262
BstKTI GATC 3 cut(s) 196, 202, 232
BstMBI GATC 3 cut(s) 193, 199, 229
BstNI CCWGG 1 cut(s) 302
BstNSI RCATGY 1 cut(s) 154
BstSCI CCNGG 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 13
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
Cac8I GCNNGC 3 cut(s) 120, 124, 152
CciI TCATGA 1 cut(s) 202
Csp6I GTAC 2 cut(s) 94, 242
CviAII CATG 3 cut(s) 151, 203, 271
CviJI RGCY 5 cut(s) 6, 71, 118, 122, 173
CviKI_1 RGCY 5 cut(s) 6, 71, 118, 122, 173
CviQI GTAC 2 cut(s) 94, 242
DdeI CTNAG 4 cut(s) 67, 87, 111, 262
DpnI GATC 3 cut(s) 195, 201, 231
DpnII GATC 3 cut(s) 193, 199, 229
Eam1104I CTCTTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 303
EcoRII CCWGG 1 cut(s) 300
FaeI CATG 3 cut(s) 154, 206, 274
FaiI YATR 8 cut(s) 105, 152, 158, 160, 162, 204, 246, 272
FatI CATG 3 cut(s) 150, 202, 270
Fnu4HI GCNGC 2 cut(s) 27, 174
Fsp4HI GCNGC 2 cut(s) 27, 174
GluI GCNGC 2 cut(s) 27, 174
GsaI CCCAGC 1 cut(s) 75
Hin1II CATG 3 cut(s) 154, 206, 274
HinfI GANTC 2 cut(s) 260, 266
HphI GGTGA 1 cut(s) 248
Hpy188I TCNGA 2 cut(s) 112, 265
Hpy188III TCNNGA 2 cut(s) 197, 203
HpyCH4V TGCA 3 cut(s) 19, 29, 154
HpyF3I CTNAG 4 cut(s) 67, 87, 111, 262
Hsp92II CATG 3 cut(s) 154, 206, 274
Kzo9I GATC 3 cut(s) 193, 199, 229
LpnPI CCDG 8 cut(s) 41, 57, 111, 132, 136, 182, 192, 287
Lsp1109I GCAGC 1 cut(s) 13
LweI GCATC 1 cut(s) 38
MalI GATC 3 cut(s) 195, 201, 231
MboI GATC 3 cut(s) 193, 199, 229
MboII GAAGA 3 cut(s) 176, 179, 239
MflI RGATCY 1 cut(s) 193
MluCI AATT 2 cut(s) 79, 137
MlyI GAGTC 2 cut(s) 254, 260
MnlI CCTC 5 cut(s) 199, 208, 247, 250, 298
MseI TTAA 2 cut(s) 42, 78
MslI CAYNNNNRTG 1 cut(s) 159
MspR9I CCNGG 1 cut(s) 302
MvaI CCWGG 1 cut(s) 302
NdeII GATC 3 cut(s) 193, 199, 229
NlaIII CATG 3 cut(s) 154, 206, 274
NlaIV GGNNCC 1 cut(s) 298
NspI RCATGY 1 cut(s) 154
PaeI GCATGC 1 cut(s) 154
PagI TCATGA 1 cut(s) 202
PkrI GCNGC 2 cut(s) 28, 175
PleI GAGTC 2 cut(s) 254, 260
PpsI GAGTC 2 cut(s) 254, 260
PshBI ATTAAT 1 cut(s) 78
Psp6I CCWGG 1 cut(s) 300
PspFI CCCAGC 1 cut(s) 71
PspGI CCWGG 1 cut(s) 300
PspN4I GGNNCC 1 cut(s) 298
PsuI RGATCY 1 cut(s) 193
RsaI GTAC 2 cut(s) 95, 243
RsaNI GTAC 2 cut(s) 94, 242
RseI CAYNNNNRTG 1 cut(s) 159
SaqAI TTAA 2 cut(s) 42, 78
SatI GCNGC 2 cut(s) 27, 174
Sau3AI GATC 3 cut(s) 193, 199, 229
SchI GAGTC 2 cut(s) 254, 260
ScrFI CCNGG 1 cut(s) 302
SetI ASST 2 cut(s) 73, 238
SfaNI GCATC 1 cut(s) 38
SmiMI CAYNNNNRTG 1 cut(s) 159
SphI GCATGC 1 cut(s) 154
Sse9I AATT 2 cut(s) 79, 137
SsiI CCGC 1 cut(s) 174
StyD4I CCNGG 1 cut(s) 300
TasI AATT 2 cut(s) 79, 137
TatI WGTACW 1 cut(s) 241
TauI GCSGC 1 cut(s) 176
Tru1I TTAA 2 cut(s) 42, 78
Tru9I TTAA 2 cut(s) 42, 78
TseI GCWGC 1 cut(s) 26
TspDTI ATGAA 2 cut(s) 177, 287
VspI ATTAAT 1 cut(s) 78
XceI RCATGY 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.