Lignin degradation and detoxification of lignin-derived products
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1083 |
| Acc36I | ACCTGC | 2 cut(s) | 1083, 1457 |
| Acc65I | GGTACC | 1 cut(s) | 348 |
| AccB1I | GGYRCC | 2 cut(s) | 348, 1071 |
| AccI | GTMKAC | 3 cut(s) | 86, 202, 1572 |
| AclWI | GGATC | 1 cut(s) | 16 |
| AcoI | YGGCCR | 2 cut(s) | 477, 1249 |
| AcsI | RAATTY | 4 cut(s) | 612, 1100, 1838, 1931 |
| AcyI | GRCGYC | 1 cut(s) | 604 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1189 |
| AjnI | CCWGG | 2 cut(s) | 1018, 1844 |
| AluBI | AGCT | 6 cut(s) | 131, 409, 638, 1302, 1672, 1832 |
| AluI | AGCT | 6 cut(s) | 131, 409, 638, 1302, 1672, 1832 |
| Alw26I | GTCTC | 3 cut(s) | 732, 899, 920 |
| AlwI | GGATC | 1 cut(s) | 16 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 638 |
| AoxI | GGCC | 5 cut(s) | 159, 299, 477, 956, 1249 |
| ApeKI | GCWGC | 1 cut(s) | 638 |
| ApoI | RAATTY | 4 cut(s) | 612, 1100, 1838, 1931 |
| AseI | ATTAAT | 2 cut(s) | 363, 1757 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1347, 1689 |
| Asp718I | GGTACC | 1 cut(s) | 348 |
| AsuC2I | CCSGG | 1 cut(s) | 1066 |
| AsuHPI | GGTGA | 1 cut(s) | 638 |
| AsuII | TTCGAA | 2 cut(s) | 356, 1447 |
| BaeGI | GKGCMC | 1 cut(s) | 1913 |
| BalI | TGGCCA | 2 cut(s) | 479, 1251 |
| BanI | GGYRCC | 2 cut(s) | 348, 1071 |
| BanII | GRGCYC | 1 cut(s) | 1950 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 566, 598 |
| BbsI | GAAGAC | 1 cut(s) | 1818 |
| BbvI | GCAGC | 1 cut(s) | 625 |
| BccI | CCATC | 3 cut(s) | 971, 1130, 1511 |
| BceAI | ACGGC | 3 cut(s) | 808, 1391, 1867 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 408, 419, 442, 453 |
| BciT130I | CCWGG | 2 cut(s) | 1020, 1846 |
| BcnI | CCSGG | 1 cut(s) | 1066 |
| BcoDI | GTCTC | 3 cut(s) | 732, 899, 920 |
| BfaI | CTAG | 4 cut(s) | 752, 1422, 1584, 1943 |
| BfmI | CTRYAG | 2 cut(s) | 87, 1833 |
| BfuAI | ACCTGC | 2 cut(s) | 1083, 1457 |
| BglII | AGATCT | 1 cut(s) | 94 |
| BisI | GCNGC | 1 cut(s) | 639 |
| BlsI | GCNGC | 1 cut(s) | 640 |
| Bme1390I | CCNGG | 3 cut(s) | 1020, 1066, 1846 |
| BmiI | GGNNCC | 2 cut(s) | 350, 1073 |
| BmrFI | CCNGG | 3 cut(s) | 1020, 1066, 1846 |
| BmsI | GCATC | 3 cut(s) | 439, 619, 1901 |
| BpiI | GAAGAC | 1 cut(s) | 1818 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1261, 1293 |
| BpmI | CTGGAG | 1 cut(s) | 1116 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1379 |
| Bpu14I | TTCGAA | 2 cut(s) | 356, 1447 |
| BpuEI | CTTGAG | 2 cut(s) | 234, 641 |
| BpuMI | CCSGG | 1 cut(s) | 1066 |
| BsaAI | YACGTR | 1 cut(s) | 1505 |
| BsaHI | GRCGYC | 1 cut(s) | 604 |
| BsaI | GGTCTC | 1 cut(s) | 920 |
| BsaJI | CCNNGG | 2 cut(s) | 162, 1018 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1164, 1194 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1189 |
| Bse1I | ACTGG | 1 cut(s) | 480 |
| Bse3DI | GCAATG | 2 cut(s) | 227, 996 |
| BseBI | CCWGG | 2 cut(s) | 1020, 1846 |
| BseDI | CCNNGG | 2 cut(s) | 162, 1018 |
| BseGI | GGATG | 5 cut(s) | 10, 898, 988, 1126, 1748 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1189 |
| BseMI | GCAATG | 2 cut(s) | 227, 996 |
| BseMII | CTCAG | 2 cut(s) | 123, 1292 |
| BseNI | ACTGG | 1 cut(s) | 480 |
| BseSI | GKGCMC | 1 cut(s) | 1913 |
| BseXI | GCAGC | 1 cut(s) | 625 |
| BsgI | GTGCAG | 1 cut(s) | 624 |
| BshFI | GGCC | 5 cut(s) | 161, 301, 479, 958, 1251 |
| BshNI | GGYRCC | 2 cut(s) | 348, 1071 |
| BsiSI | CCGG | 2 cut(s) | 1066, 1352 |
| BslFI | GGGAC | 1 cut(s) | 1805 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1189 |
| BsmAI | GTCTC | 3 cut(s) | 732, 899, 920 |
| BsmFI | GGGAC | 1 cut(s) | 1805 |
| BsmI | GAATGC | 4 cut(s) | 1066, 1162, 1685, 1689 |
| BsnI | GGCC | 5 cut(s) | 161, 301, 479, 958, 1251 |
| Bso31I | GGTCTC | 1 cut(s) | 920 |
| Bsp119I | TTCGAA | 2 cut(s) | 356, 1447 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1913, 1950 |
| Bsp1407I | TGTACA | 2 cut(s) | 582, 1040 |
| Bsp143I | GATC | 8 cut(s) | 8, 94, 440, 449, 460, 539, 1177, 1459 |
| Bsp19I | CCATGG | 1 cut(s) | 162 |
| BspANI | GGCC | 5 cut(s) | 161, 301, 479, 958, 1251 |
| BspCNI | CTCAG | 2 cut(s) | 124, 1291 |
| BspHI | TCATGA | 1 cut(s) | 1807 |
| BspLI | GGNNCC | 2 cut(s) | 350, 1073 |
| BspMI | ACCTGC | 2 cut(s) | 1083, 1457 |
| BspPI | GGATC | 1 cut(s) | 16 |
| BspT104I | TTCGAA | 2 cut(s) | 356, 1447 |
| BspT107I | GGYRCC | 2 cut(s) | 348, 1071 |
| BspTNI | GGTCTC | 1 cut(s) | 920 |
| BsrDI | GCAATG | 2 cut(s) | 227, 996 |
| BsrGI | TGTACA | 2 cut(s) | 582, 1040 |
| BsrI | ACTGG | 1 cut(s) | 480 |
| BssECI | CCNNGG | 2 cut(s) | 162, 1018 |
| BssMI | GATC | 8 cut(s) | 8, 94, 440, 449, 460, 539, 1177, 1459 |
| BssNAI | GTATAC | 2 cut(s) | 203, 1573 |
| BssNI | GRCGYC | 1 cut(s) | 604 |
| BssT1I | CCWWGG | 1 cut(s) | 162 |
| Bst1107I | GTATAC | 2 cut(s) | 203, 1573 |
| Bst2UI | CCWGG | 2 cut(s) | 1020, 1846 |
| Bst4CI | ACNGT | 7 cut(s) | 44, 121, 353, 868, 1088, 1328, 1624 |
| Bst6I | CTCTTC | 4 cut(s) | 256, 261, 1392, 1757 |
| BstACI | GRCGYC | 1 cut(s) | 604 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 638, 1061 |
| BstAUI | TGTACA | 2 cut(s) | 582, 1040 |
| BstBAI | YACGTR | 1 cut(s) | 1505 |
| BstBI | TTCGAA | 2 cut(s) | 356, 1447 |
| BstC8I | GCNNGC | 2 cut(s) | 299, 411 |
| BstDEI | CTNAG | 3 cut(s) | 132, 1278, 1379 |
| BstDSI | CCRYGG | 1 cut(s) | 162 |
| BstF5I | GGATG | 5 cut(s) | 10, 898, 988, 1126, 1748 |
| BstKTI | GATC | 8 cut(s) | 11, 97, 443, 452, 463, 542, 1180, 1462 |
| BstMAI | GTCTC | 3 cut(s) | 732, 899, 920 |
| BstMBI | GATC | 8 cut(s) | 8, 94, 440, 449, 460, 539, 1177, 1459 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 638, 644, 696, 1061 |
| BstNI | CCWGG | 2 cut(s) | 1020, 1846 |
| BstNSI | RCATGY | 1 cut(s) | 1502 |
| BstSCI | CCNGG | 3 cut(s) | 1018, 1064, 1844 |
| BstSFI | CTRYAG | 2 cut(s) | 87, 1833 |
| BstSLI | GKGCMC | 1 cut(s) | 1913 |
| BstSNI | TACGTA | 1 cut(s) | 1505 |
| BstV1I | GCAGC | 1 cut(s) | 625 |
| BstV2I | GAAGAC | 1 cut(s) | 1818 |
| BstX2I | RGATCY | 1 cut(s) | 94 |
| BstYI | RGATCY | 1 cut(s) | 94 |
| BstZ17I | GTATAC | 2 cut(s) | 203, 1573 |
| BsuRI | GGCC | 5 cut(s) | 161, 301, 479, 958, 1251 |
| BtgI | CCRYGG | 1 cut(s) | 162 |
| BtsCI | GGATG | 5 cut(s) | 10, 898, 988, 1126, 1748 |
| BtsIMutI | CAGTG | 3 cut(s) | 473, 1093, 1479 |
| BveI | ACCTGC | 2 cut(s) | 1083, 1457 |
| Cac8I | GCNNGC | 2 cut(s) | 299, 411 |
| CaiI | CAGNNNCTG | 1 cut(s) | 638 |
| CciI | TCATGA | 1 cut(s) | 1807 |
| CseI | GACGC | 1 cut(s) | 612 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 853, 888 |
| DdeI | CTNAG | 3 cut(s) | 132, 1278, 1379 |
| DpnI | GATC | 8 cut(s) | 10, 96, 442, 451, 462, 541, 1179, 1461 |
| DpnII | GATC | 8 cut(s) | 8, 94, 440, 449, 460, 539, 1177, 1459 |
| DraI | TTTAAA | 1 cut(s) | 1860 |
| EaeI | YGGCCR | 2 cut(s) | 477, 1249 |
| Eam1104I | CTCTTC | 4 cut(s) | 256, 261, 1392, 1757 |
| EarI | CTCTTC | 4 cut(s) | 256, 261, 1392, 1757 |
| Eco105I | TACGTA | 1 cut(s) | 1505 |
| Eco130I | CCWWGG | 1 cut(s) | 162 |
| Eco147I | AGGCCT | 1 cut(s) | 958 |
| Eco24I | GRGCYC | 1 cut(s) | 1950 |
| Eco31I | GGTCTC | 1 cut(s) | 920 |
| EcoRI | GAATTC | 1 cut(s) | 1931 |
| EcoRII | CCWGG | 2 cut(s) | 1018, 1844 |
| EcoT14I | CCWWGG | 1 cut(s) | 162 |
| EcoT38I | GRGCYC | 1 cut(s) | 1950 |
| ErhI | CCWWGG | 1 cut(s) | 162 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 627, 659 |
| FaqI | GGGAC | 1 cut(s) | 1805 |
| FauNDI | CATATG | 1 cut(s) | 520 |
| FblI | GTMKAC | 3 cut(s) | 86, 202, 1572 |
| Fnu4HI | GCNGC | 1 cut(s) | 639 |
| FokI | GGATG | 5 cut(s) | 17, 905, 995, 1133, 1735 |
| FriOI | GRGCYC | 1 cut(s) | 1950 |
| Fsp4HI | GCNGC | 1 cut(s) | 639 |
| FspBI | CTAG | 4 cut(s) | 752, 1422, 1584, 1943 |
| GluI | GCNGC | 1 cut(s) | 639 |
| GsuI | CTGGAG | 1 cut(s) | 1116 |
| HaeIII | GGCC | 5 cut(s) | 161, 301, 479, 958, 1251 |
| HapII | CCGG | 2 cut(s) | 1066, 1352 |
| HgaI | GACGC | 1 cut(s) | 612 |
| Hin1I | GRCGYC | 1 cut(s) | 604 |
| HincII | GTYRAC | 1 cut(s) | 1168 |
| HindII | GTYRAC | 1 cut(s) | 1168 |
| HinfI | GANTC | 9 cut(s) | 17, 134, 219, 318, 425, 596, 674, 740, 1741 |
| HpaI | GTTAAC | 1 cut(s) | 1168 |
| HpaII | CCGG | 2 cut(s) | 1066, 1352 |
| HphI | GGTGA | 1 cut(s) | 638 |
| Hpy166II | GTNNAC | 9 cut(s) | 87, 203, 1041, 1168, 1479, 1573, 1627, 1770, 1877 |
| Hpy188I | TCNGA | 6 cut(s) | 1099, 1281, 1320, 1789, 1940, 1960 |
| Hpy188III | TCNNGA | 7 cut(s) | 543, 600, 1133, 1542, 1634, 1808, 1921 |
| Hpy8I | GTNNAC | 9 cut(s) | 87, 203, 1041, 1168, 1479, 1573, 1627, 1770, 1877 |
| HpyAV | CCTTC | 5 cut(s) | 568, 990, 1303, 1679, 1755 |
| HpyCH4III | ACNGT | 7 cut(s) | 44, 121, 353, 868, 1088, 1328, 1624 |
| HpyCH4IV | ACGT | 3 cut(s) | 1108, 1504, 1818 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 638, 644, 696, 1061 |
| HpyF3I | CTNAG | 3 cut(s) | 132, 1278, 1379 |
| HpySE526I | ACGT | 3 cut(s) | 1108, 1504, 1818 |
| Hsp92I | GRCGYC | 1 cut(s) | 604 |
| KpnI | GGTACC | 1 cut(s) | 352 |
| KspAI | GTTAAC | 1 cut(s) | 1168 |
| Kzo9I | GATC | 8 cut(s) | 8, 94, 440, 449, 460, 539, 1177, 1459 |
| Lsp1109I | GCAGC | 1 cut(s) | 625 |
| LweI | GCATC | 3 cut(s) | 439, 619, 1901 |
| MaeI | CTAG | 4 cut(s) | 752, 1422, 1584, 1943 |
| MaeII | ACGT | 3 cut(s) | 1108, 1504, 1818 |
| MaeIII | GTNAC | 7 cut(s) | 38, 220, 278, 1126, 1371, 1505, 1586 |
| MalI | GATC | 8 cut(s) | 10, 96, 442, 451, 462, 541, 1179, 1461 |
| MboI | GATC | 8 cut(s) | 8, 94, 440, 449, 460, 539, 1177, 1459 |
| MflI | RGATCY | 1 cut(s) | 94 |
| MhlI | GDGCHC | 2 cut(s) | 1913, 1950 |
| MlsI | TGGCCA | 2 cut(s) | 479, 1251 |
| MluCI | AATT | 9 cut(s) | 612, 745, 1100, 1253, 1334, 1451, 1838, 1861, 1931 |
| MluNI | TGGCCA | 2 cut(s) | 479, 1251 |
| MlyI | GAGTC | 5 cut(s) | 143, 228, 434, 668, 734 |
| Mox20I | TGGCCA | 2 cut(s) | 479, 1251 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1347, 1689 |
| MscI | TGGCCA | 2 cut(s) | 479, 1251 |
| MslI | CAYNNNNRTG | 2 cut(s) | 485, 519 |
| Msp20I | TGGCCA | 2 cut(s) | 479, 1251 |
| MspI | CCGG | 2 cut(s) | 1066, 1352 |
| MspR9I | CCNGG | 3 cut(s) | 1020, 1066, 1846 |
| Mva1269I | GAATGC | 4 cut(s) | 1066, 1162, 1685, 1689 |
| MvaI | CCWGG | 2 cut(s) | 1020, 1846 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 638, 644, 696, 1061 |
| NciI | CCSGG | 1 cut(s) | 1066 |
| NcoI | CCATGG | 1 cut(s) | 162 |
| NdeI | CATATG | 1 cut(s) | 520 |
| NdeII | GATC | 8 cut(s) | 8, 94, 440, 449, 460, 539, 1177, 1459 |
| NlaIV | GGNNCC | 2 cut(s) | 350, 1073 |
| NmeAIII | GCCGAG | 1 cut(s) | 632 |
| NmuCI | GTSAC | 3 cut(s) | 38, 220, 1126 |
| NspI | RCATGY | 1 cut(s) | 1502 |
| NspV | TTCGAA | 2 cut(s) | 356, 1447 |
| PagI | TCATGA | 1 cut(s) | 1807 |
| PaqCI | CACCTGC | 1 cut(s) | 1083 |
| PceI | AGGCCT | 1 cut(s) | 958 |
| PctI | GAATGC | 4 cut(s) | 1066, 1162, 1685, 1689 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1347, 1689 |
| PfeI | GAWTC | 4 cut(s) | 17, 318, 596, 1741 |
| PflFI | GACNNNGTC | 2 cut(s) | 1774, 1817 |
| PkrI | GCNGC | 1 cut(s) | 640 |
| PleI | GAGTC | 5 cut(s) | 142, 227, 433, 668, 734 |
| PpsI | GAGTC | 5 cut(s) | 142, 227, 433, 668, 734 |
| Ppu21I | YACGTR | 1 cut(s) | 1505 |
| PshBI | ATTAAT | 2 cut(s) | 363, 1757 |
| Psp6I | CCWGG | 2 cut(s) | 1018, 1844 |
| PspGI | CCWGG | 2 cut(s) | 1018, 1844 |
| PspN4I | GGNNCC | 2 cut(s) | 350, 1073 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1645, 1677 |
| PstNI | CAGNNNCTG | 1 cut(s) | 638 |
| PsuI | RGATCY | 1 cut(s) | 94 |
| PsyI | GACNNNGTC | 2 cut(s) | 1774, 1817 |
| RseI | CAYNNNNRTG | 2 cut(s) | 485, 519 |
| SatI | GCNGC | 1 cut(s) | 639 |
| Sau3AI | GATC | 8 cut(s) | 8, 94, 440, 449, 460, 539, 1177, 1459 |
| SchI | GAGTC | 5 cut(s) | 143, 228, 434, 668, 734 |
| ScrFI | CCNGG | 3 cut(s) | 1020, 1066, 1846 |
| SduI | GDGCHC | 2 cut(s) | 1913, 1950 |
| SfaNI | GCATC | 3 cut(s) | 439, 619, 1901 |
| SfcI | CTRYAG | 2 cut(s) | 87, 1833 |
| SfuI | TTCGAA | 2 cut(s) | 356, 1447 |
| SmiI | ATTTAAAT | 1 cut(s) | 1860 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 485, 519 |
| SmlI | CTYRAG | 2 cut(s) | 249, 620 |
| SmoI | CTYRAG | 2 cut(s) | 249, 620 |
| SnaBI | TACGTA | 1 cut(s) | 1505 |
| Sse9I | AATT | 9 cut(s) | 612, 745, 1100, 1253, 1334, 1451, 1838, 1861, 1931 |
| SseBI | AGGCCT | 1 cut(s) | 958 |
| SspI | AATATT | 2 cut(s) | 361, 1800 |
| SspMI | CTAG | 4 cut(s) | 752, 1422, 1584, 1943 |
| StuI | AGGCCT | 1 cut(s) | 958 |
| StyD4I | CCNGG | 3 cut(s) | 1018, 1064, 1844 |
| StyI | CCWWGG | 1 cut(s) | 162 |
| SwaI | ATTTAAAT | 1 cut(s) | 1860 |
| TaaI | ACNGT | 7 cut(s) | 44, 121, 353, 868, 1088, 1328, 1624 |
| TaiI | ACGT | 3 cut(s) | 1111, 1507, 1821 |
| TaqI | TCGA | 6 cut(s) | 356, 439, 860, 1447, 1543, 1895 |
| TasI | AATT | 9 cut(s) | 612, 745, 1100, 1253, 1334, 1451, 1838, 1861, 1931 |
| TatI | WGTACW | 4 cut(s) | 270, 582, 1040, 1614 |
| TfiI | GAWTC | 4 cut(s) | 17, 318, 596, 1741 |
| TscAI | CASTG | 3 cut(s) | 480, 1093, 1486 |
| TseFI | GTSAC | 3 cut(s) | 38, 220, 1126 |
| TseI | GCWGC | 1 cut(s) | 638 |
| Tsp45I | GTSAC | 3 cut(s) | 38, 220, 1126 |
| TspGWI | ACGGA | 1 cut(s) | 1928 |
| TspRI | CASTG | 3 cut(s) | 480, 1093, 1486 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1774, 1817 |
| VspI | ATTAAT | 2 cut(s) | 363, 1757 |
| XapI | RAATTY | 4 cut(s) | 612, 1100, 1838, 1931 |
| XceI | RCATGY | 1 cut(s) | 1502 |
| XmiI | GTMKAC | 3 cut(s) | 86, 202, 1572 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1347, 1689 |
| XspI | CTAG | 4 cut(s) | 752, 1422, 1584, 1943 |