Lignin degradation and detoxification of lignin-derived products
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 591 |
| Acc36I | ACCTGC | 1 cut(s) | 1060 |
| AccB1I | GGYRCC | 1 cut(s) | 464 |
| AciI | CCGC | 2 cut(s) | 1145, 1712 |
| AclWI | GGATC | 5 cut(s) | 379, 1504, 1523, 1547, 1662 |
| AcsI | RAATTY | 4 cut(s) | 376, 1339, 1510, 1793 |
| AcyI | GRCGYC | 1 cut(s) | 588 |
| AdeI | CACNNNGTG | 1 cut(s) | 354 |
| AfaI | GTAC | 9 cut(s) | 144, 231, 537, 676, 710, 1024, 1139, 1397, 1429 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1266, 1589 |
| AgsI | TTSAA | 3 cut(s) | 116, 365, 1612 |
| AhlI | ACTAGT | 1 cut(s) | 35 |
| AjnI | CCWGG | 5 cut(s) | 211, 367, 643, 720, 1624 |
| AleI | CACNNNNGTG | 1 cut(s) | 421 |
| AluBI | AGCT | 7 cut(s) | 452, 872, 1083, 1227, 1482, 1539, 1680 |
| AluI | AGCT | 7 cut(s) | 452, 872, 1083, 1227, 1482, 1539, 1680 |
| Alw21I | GWGCWC | 1 cut(s) | 63 |
| Alw26I | GTCTC | 2 cut(s) | 485, 885 |
| AlwI | GGATC | 5 cut(s) | 379, 1504, 1523, 1547, 1662 |
| Ama87I | CYCGRG | 1 cut(s) | 509 |
| AoxI | GGCC | 4 cut(s) | 153, 215, 280, 926 |
| ApeKI | GCWGC | 2 cut(s) | 902, 1001 |
| ApoI | RAATTY | 4 cut(s) | 376, 1339, 1510, 1793 |
| AseI | ATTAAT | 1 cut(s) | 1440 |
| AspLEI | GCGC | 1 cut(s) | 100 |
| AspS9I | GGNCC | 3 cut(s) | 215, 335, 444 |
| AsuC2I | CCSGG | 1 cut(s) | 843 |
| AsuHPI | GGTGA | 3 cut(s) | 251, 1129, 1755 |
| AvaI | CYCGRG | 1 cut(s) | 509 |
| AvaII | GGWCC | 2 cut(s) | 335, 444 |
| BanI | GGYRCC | 1 cut(s) | 464 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1015, 1047 |
| Bbv12I | GWGCWC | 1 cut(s) | 63 |
| BbvI | GCAGC | 2 cut(s) | 889, 1013 |
| BccI | CCATC | 6 cut(s) | 46, 326, 512, 788, 1587, 1778 |
| BciT130I | CCWGG | 5 cut(s) | 213, 369, 645, 722, 1626 |
| BclI | TGATCA | 1 cut(s) | 934 |
| BcnI | CCSGG | 1 cut(s) | 843 |
| BcoDI | GTCTC | 2 cut(s) | 485, 885 |
| BcuI | ACTAGT | 1 cut(s) | 35 |
| BfaI | CTAG | 4 cut(s) | 18, 36, 453, 906 |
| BfmI | CTRYAG | 3 cut(s) | 999, 1242, 1264 |
| BfuAI | ACCTGC | 1 cut(s) | 1060 |
| BisI | GCNGC | 2 cut(s) | 903, 1002 |
| BlpI | GCTNAGC | 1 cut(s) | 1084 |
| BlsI | GCNGC | 2 cut(s) | 904, 1003 |
| Bme1390I | CCNGG | 6 cut(s) | 213, 369, 645, 722, 843, 1626 |
| Bme18I | GGWCC | 2 cut(s) | 335, 444 |
| BmeT110I | CYCGRG | 1 cut(s) | 509 |
| BmgT120I | GGNCC | 3 cut(s) | 215, 335, 444 |
| BmiI | GGNNCC | 3 cut(s) | 274, 320, 466 |
| BmrFI | CCNGG | 6 cut(s) | 213, 369, 645, 722, 843, 1626 |
| BmsI | GCATC | 2 cut(s) | 316, 1454 |
| BpmI | CTGGAG | 1 cut(s) | 992 |
| Bpu10I | CCTNAGC | 1 cut(s) | 582 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1084 |
| BpuMI | CCSGG | 1 cut(s) | 843 |
| BsaAI | YACGTR | 1 cut(s) | 678 |
| BsaHI | GRCGYC | 1 cut(s) | 588 |
| BsaJI | CCNNGG | 8 cut(s) | 212, 314, 323, 460, 841, 852, 1377, 1625 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 789, 819 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1266, 1589 |
| Bse118I | RCCGGY | 1 cut(s) | 1114 |
| Bse1I | ACTGG | 3 cut(s) | 218, 299, 877 |
| BseBI | CCWGG | 5 cut(s) | 213, 369, 645, 722, 1626 |
| BseDI | CCNNGG | 8 cut(s) | 212, 314, 323, 460, 841, 852, 1377, 1625 |
| BseGI | GGATG | 4 cut(s) | 57, 799, 1456, 1598 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1266, 1589 |
| BseMII | CTCAG | 4 cut(s) | 160, 330, 1305, 1347 |
| BseNI | ACTGG | 3 cut(s) | 218, 299, 877 |
| BseRI | GAGGAG | 2 cut(s) | 600, 1725 |
| BseXI | GCAGC | 2 cut(s) | 889, 1013 |
| BseYI | CCCAGC | 2 cut(s) | 73, 1227 |
| BsgI | GTGCAG | 2 cut(s) | 750, 1738 |
| BshFI | GGCC | 4 cut(s) | 155, 217, 282, 928 |
| BshNI | GGYRCC | 1 cut(s) | 464 |
| BsiHKAI | GWGCWC | 1 cut(s) | 63 |
| BsiHKCI | CYCGRG | 1 cut(s) | 509 |
| BsiSI | CCGG | 2 cut(s) | 843, 1115 |
| BslFI | GGGAC | 1 cut(s) | 1565 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1266, 1589 |
| BsmAI | GTCTC | 2 cut(s) | 485, 885 |
| BsmFI | GGGAC | 1 cut(s) | 1565 |
| BsmI | GAATGC | 1 cut(s) | 745 |
| BsnI | GGCC | 4 cut(s) | 155, 217, 282, 928 |
| BsoBI | CYCGRG | 1 cut(s) | 509 |
| Bsp1286I | GDGCHC | 1 cut(s) | 63 |
| Bsp1407I | TGTACA | 2 cut(s) | 229, 1137 |
| Bsp143I | GATC | 6 cut(s) | 371, 934, 1496, 1528, 1552, 1654 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1084 |
| Bsp19I | CCATGG | 2 cut(s) | 460, 852 |
| BspACI | CCGC | 2 cut(s) | 1145, 1712 |
| BspANI | GGCC | 4 cut(s) | 155, 217, 282, 928 |
| BspCNI | CTCAG | 4 cut(s) | 159, 331, 1304, 1348 |
| BspHI | TCATGA | 1 cut(s) | 831 |
| BspLI | GGNNCC | 3 cut(s) | 274, 320, 466 |
| BspMAI | CTGCAG | 1 cut(s) | 1003 |
| BspMI | ACCTGC | 1 cut(s) | 1060 |
| BspPI | GGATC | 5 cut(s) | 379, 1504, 1523, 1547, 1662 |
| BspQI | GCTCTTC | 1 cut(s) | 1206 |
| BspT107I | GGYRCC | 1 cut(s) | 464 |
| BsrFI | RCCGGY | 1 cut(s) | 1114 |
| BsrGI | TGTACA | 2 cut(s) | 229, 1137 |
| BsrI | ACTGG | 3 cut(s) | 218, 299, 877 |
| BssAI | RCCGGY | 1 cut(s) | 1114 |
| BssECI | CCNNGG | 8 cut(s) | 212, 314, 323, 460, 841, 852, 1377, 1625 |
| BssMI | GATC | 6 cut(s) | 371, 934, 1496, 1528, 1552, 1654 |
| BssNI | GRCGYC | 1 cut(s) | 588 |
| BssT1I | CCWWGG | 5 cut(s) | 314, 323, 460, 852, 1377 |
| Bst2UI | CCWGG | 5 cut(s) | 213, 369, 645, 722, 1626 |
| Bst4CI | ACNGT | 7 cut(s) | 206, 247, 674, 781, 1195, 1366, 1646 |
| Bst6I | CTCTTC | 2 cut(s) | 1206, 1398 |
| BstACI | GRCGYC | 1 cut(s) | 588 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 304 |
| BstAUI | TGTACA | 2 cut(s) | 229, 1137 |
| BstBAI | YACGTR | 1 cut(s) | 678 |
| BstC8I | GCNNGC | 5 cut(s) | 188, 429, 686, 1090, 1724 |
| BstDEI | CTNAG | 7 cut(s) | 146, 180, 339, 582, 1084, 1291, 1356 |
| BstDSI | CCRYGG | 2 cut(s) | 460, 852 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1264 |
| BstF5I | GGATG | 4 cut(s) | 57, 799, 1456, 1598 |
| BstHHI | GCGC | 1 cut(s) | 100 |
| BstKTI | GATC | 6 cut(s) | 374, 937, 1499, 1531, 1555, 1657 |
| BstMAI | GTCTC | 2 cut(s) | 485, 885 |
| BstMBI | GATC | 6 cut(s) | 371, 934, 1496, 1528, 1552, 1654 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 304, 621, 1089, 1205 |
| BstNI | CCWGG | 5 cut(s) | 213, 369, 645, 722, 1626 |
| BstNSI | RCATGY | 4 cut(s) | 190, 431, 1726, 1747 |
| BstSCI | CCNGG | 6 cut(s) | 211, 367, 643, 720, 841, 1624 |
| BstSFI | CTRYAG | 3 cut(s) | 999, 1242, 1264 |
| BstSNI | TACGTA | 1 cut(s) | 678 |
| BstV1I | GCAGC | 2 cut(s) | 889, 1013 |
| BstX2I | RGATCY | 1 cut(s) | 1528 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 884 |
| BstYI | RGATCY | 1 cut(s) | 1528 |
| BsuRI | GGCC | 4 cut(s) | 155, 217, 282, 928 |
| BtgI | CCRYGG | 2 cut(s) | 460, 852 |
| BtsCI | GGATG | 4 cut(s) | 57, 799, 1456, 1598 |
| BtsI | GCAGTG | 2 cut(s) | 100, 359 |
| BtsIMutI | CAGTG | 6 cut(s) | 100, 292, 359, 777, 1642, 1755 |
| BveI | ACCTGC | 1 cut(s) | 1060 |
| Cac8I | GCNNGC | 5 cut(s) | 188, 429, 686, 1090, 1724 |
| CciI | TCATGA | 1 cut(s) | 831 |
| CfoI | GCGC | 1 cut(s) | 100 |
| Cfr10I | RCCGGY | 1 cut(s) | 1114 |
| Cfr13I | GGNCC | 3 cut(s) | 215, 335, 444 |
| Csp6I | GTAC | 9 cut(s) | 143, 230, 536, 675, 709, 1023, 1138, 1396, 1428 |
| CviQI | GTAC | 9 cut(s) | 143, 230, 536, 675, 709, 1023, 1138, 1396, 1428 |
| DdeI | CTNAG | 7 cut(s) | 146, 180, 339, 582, 1084, 1291, 1356 |
| DpnI | GATC | 6 cut(s) | 373, 936, 1498, 1530, 1554, 1656 |
| DpnII | GATC | 6 cut(s) | 371, 934, 1496, 1528, 1552, 1654 |
| DraI | TTTAAA | 1 cut(s) | 1215 |
| DraIII | CACNNNGTG | 1 cut(s) | 354 |
| Eam1104I | CTCTTC | 2 cut(s) | 1206, 1398 |
| EarI | CTCTTC | 2 cut(s) | 1206, 1398 |
| Eco105I | TACGTA | 1 cut(s) | 678 |
| Eco130I | CCWWGG | 5 cut(s) | 314, 323, 460, 852, 1377 |
| Eco47I | GGWCC | 2 cut(s) | 335, 444 |
| Eco88I | CYCGRG | 1 cut(s) | 509 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1264 |
| EcoRII | CCWGG | 5 cut(s) | 211, 367, 643, 720, 1624 |
| EcoT14I | CCWWGG | 5 cut(s) | 314, 323, 460, 852, 1377 |
| EcoT22I | ATGCAT | 2 cut(s) | 6, 1447 |
| ErhI | CCWWGG | 5 cut(s) | 314, 323, 460, 852, 1377 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 307, 339, 402, 434 |
| FaqI | GGGAC | 1 cut(s) | 1565 |
| FauNDI | CATATG | 1 cut(s) | 802 |
| FbaI | TGATCA | 1 cut(s) | 934 |
| Fnu4HI | GCNGC | 2 cut(s) | 903, 1002 |
| FokI | GGATG | 4 cut(s) | 64, 806, 1443, 1605 |
| Fsp4HI | GCNGC | 2 cut(s) | 903, 1002 |
| FspBI | CTAG | 4 cut(s) | 18, 36, 453, 906 |
| GlaI | GCGC | 1 cut(s) | 99 |
| GluI | GCNGC | 2 cut(s) | 903, 1002 |
| GsaI | CCCAGC | 2 cut(s) | 77, 1231 |
| GsuI | CTGGAG | 1 cut(s) | 992 |
| HaeIII | GGCC | 4 cut(s) | 155, 217, 282, 928 |
| HapII | CCGG | 2 cut(s) | 843, 1115 |
| HhaI | GCGC | 1 cut(s) | 100 |
| Hin1I | GRCGYC | 1 cut(s) | 588 |
| Hin6I | GCGC | 1 cut(s) | 98 |
| HinP1I | GCGC | 1 cut(s) | 98 |
| HinfI | GANTC | 2 cut(s) | 1453, 1760 |
| HpaII | CCGG | 2 cut(s) | 843, 1115 |
| HphI | GGTGA | 3 cut(s) | 251, 1129, 1755 |
| Hpy166II | GTNNAC | 3 cut(s) | 127, 230, 1065 |
| Hpy188III | TCNNGA | 6 cut(s) | 338, 509, 832, 938, 971, 1078 |
| Hpy8I | GTNNAC | 3 cut(s) | 127, 230, 1065 |
| Hpy99I | CGWCG | 1 cut(s) | 593 |
| HpyAV | CCTTC | 6 cut(s) | 110, 404, 590, 722, 1041, 1794 |
| HpyCH4III | ACNGT | 7 cut(s) | 206, 247, 674, 781, 1195, 1366, 1646 |
| HpyCH4IV | ACGT | 3 cut(s) | 588, 677, 707 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 304, 621, 1089, 1205 |
| HpyF3I | CTNAG | 7 cut(s) | 146, 180, 339, 582, 1084, 1291, 1356 |
| HpySE526I | ACGT | 3 cut(s) | 588, 677, 707 |
| Hsp92I | GRCGYC | 1 cut(s) | 588 |
| HspAI | GCGC | 1 cut(s) | 98 |
| Ksp22I | TGATCA | 1 cut(s) | 934 |
| Kzo9I | GATC | 6 cut(s) | 371, 934, 1496, 1528, 1552, 1654 |
| LguI | GCTCTTC | 1 cut(s) | 1206 |
| LmnI | GCTCC | 3 cut(s) | 66, 272, 797 |
| Lsp1109I | GCAGC | 2 cut(s) | 889, 1013 |
| LweI | GCATC | 2 cut(s) | 316, 1454 |
| MaeI | CTAG | 4 cut(s) | 18, 36, 453, 906 |
| MaeII | ACGT | 3 cut(s) | 588, 677, 707 |
| MaeIII | GTNAC | 6 cut(s) | 346, 817, 865, 958, 1189, 1360 |
| MalI | GATC | 6 cut(s) | 373, 936, 1498, 1530, 1554, 1656 |
| MboI | GATC | 6 cut(s) | 371, 934, 1496, 1528, 1552, 1654 |
| MboII | GAAGA | 7 cut(s) | 536, 605, 707, 1193, 1415, 1573, 1708 |
| MfeI | CAATTG | 1 cut(s) | 360 |
| MflI | RGATCY | 1 cut(s) | 1528 |
| MhlI | GDGCHC | 1 cut(s) | 63 |
| MmeI | TCCRAC | 2 cut(s) | 1262, 1474 |
| Mph1103I | ATGCAT | 2 cut(s) | 6, 1447 |
| MseI | TTAA | 3 cut(s) | 1214, 1233, 1440 |
| MslI | CAYNNNNRTG | 4 cut(s) | 132, 297, 421, 1470 |
| MspA1I | CMGCKG | 1 cut(s) | 1712 |
| MspI | CCGG | 2 cut(s) | 843, 1115 |
| MspR9I | CCNGG | 6 cut(s) | 213, 369, 645, 722, 843, 1626 |
| MssI | GTTTAAAC | 1 cut(s) | 1215 |
| MunI | CAATTG | 1 cut(s) | 360 |
| Mva1269I | GAATGC | 1 cut(s) | 745 |
| MvaI | CCWGG | 5 cut(s) | 213, 369, 645, 722, 1626 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 304, 621, 1089, 1205 |
| NciI | CCSGG | 1 cut(s) | 843 |
| NcoI | CCATGG | 2 cut(s) | 460, 852 |
| NdeI | CATATG | 1 cut(s) | 802 |
| NdeII | GATC | 6 cut(s) | 371, 934, 1496, 1528, 1552, 1654 |
| NlaIV | GGNNCC | 3 cut(s) | 274, 320, 466 |
| NmuCI | GTSAC | 4 cut(s) | 346, 817, 865, 1189 |
| NsiI | ATGCAT | 2 cut(s) | 6, 1447 |
| NspI | RCATGY | 4 cut(s) | 190, 431, 1726, 1747 |
| OliI | CACNNNNGTG | 1 cut(s) | 421 |
| PaeI | GCATGC | 3 cut(s) | 190, 431, 1726 |
| PagI | TCATGA | 1 cut(s) | 831 |
| PciSI | GCTCTTC | 1 cut(s) | 1206 |
| PctI | GAATGC | 1 cut(s) | 745 |
| PfeI | GAWTC | 2 cut(s) | 1453, 1760 |
| PkrI | GCNGC | 2 cut(s) | 904, 1003 |
| PmeI | GTTTAAAC | 1 cut(s) | 1215 |
| Ppu21I | YACGTR | 1 cut(s) | 678 |
| PshBI | ATTAAT | 1 cut(s) | 1440 |
| Psp6I | CCWGG | 5 cut(s) | 211, 367, 643, 720, 1624 |
| PspFI | CCCAGC | 2 cut(s) | 73, 1227 |
| PspGI | CCWGG | 5 cut(s) | 211, 367, 643, 720, 1624 |
| PspN4I | GGNNCC | 3 cut(s) | 274, 320, 466 |
| PspPI | GGNCC | 3 cut(s) | 215, 335, 444 |
| PstI | CTGCAG | 1 cut(s) | 1003 |
| PsuI | RGATCY | 1 cut(s) | 1528 |
| RsaI | GTAC | 9 cut(s) | 144, 231, 537, 676, 710, 1024, 1139, 1397, 1429 |
| RsaNI | GTAC | 9 cut(s) | 143, 230, 536, 675, 709, 1023, 1138, 1396, 1428 |
| RseI | CAYNNNNRTG | 4 cut(s) | 132, 297, 421, 1470 |
| SapI | GCTCTTC | 1 cut(s) | 1206 |
| SaqAI | TTAA | 3 cut(s) | 1214, 1233, 1440 |
| SatI | GCNGC | 2 cut(s) | 903, 1002 |
| Sau3AI | GATC | 6 cut(s) | 371, 934, 1496, 1528, 1552, 1654 |
| Sau96I | GGNCC | 3 cut(s) | 215, 335, 444 |
| ScrFI | CCNGG | 6 cut(s) | 213, 369, 645, 722, 843, 1626 |
| SduI | GDGCHC | 1 cut(s) | 63 |
| SfaNI | GCATC | 2 cut(s) | 316, 1454 |
| SfcI | CTRYAG | 3 cut(s) | 999, 1242, 1264 |
| SinI | GGWCC | 2 cut(s) | 335, 444 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 132, 297, 421, 1470 |
| SnaBI | TACGTA | 1 cut(s) | 678 |
| SpeI | ACTAGT | 1 cut(s) | 35 |
| SphI | GCATGC | 3 cut(s) | 190, 431, 1726 |
| SsiI | CCGC | 2 cut(s) | 1145, 1712 |
| SspMI | CTAG | 4 cut(s) | 18, 36, 453, 906 |
| StyD4I | CCNGG | 6 cut(s) | 211, 367, 643, 720, 841, 1624 |
| StyI | CCWWGG | 5 cut(s) | 314, 323, 460, 852, 1377 |
| TaaI | ACNGT | 7 cut(s) | 206, 247, 674, 781, 1195, 1366, 1646 |
| TaiI | ACGT | 3 cut(s) | 591, 680, 710 |
| TaqI | TCGA | 2 cut(s) | 591, 1657 |
| TatI | WGTACW | 5 cut(s) | 142, 229, 535, 1137, 1395 |
| TfiI | GAWTC | 2 cut(s) | 1453, 1760 |
| Tru1I | TTAA | 3 cut(s) | 1214, 1233, 1440 |
| Tru9I | TTAA | 3 cut(s) | 1214, 1233, 1440 |
| TscAI | CASTG | 6 cut(s) | 100, 299, 359, 784, 1649, 1762 |
| TseFI | GTSAC | 4 cut(s) | 346, 817, 865, 1189 |
| TseI | GCWGC | 2 cut(s) | 902, 1001 |
| Tsp45I | GTSAC | 4 cut(s) | 346, 817, 865, 1189 |
| TspDTI | ATGAA | 6 cut(s) | 647, 752, 1169, 1350, 1416, 1601 |
| TspGWI | ACGGA | 1 cut(s) | 32 |
| TspRI | CASTG | 6 cut(s) | 100, 299, 359, 784, 1649, 1762 |
| VpaK11BI | GGWCC | 2 cut(s) | 335, 444 |
| VspI | ATTAAT | 1 cut(s) | 1440 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1264 |
| XapI | RAATTY | 4 cut(s) | 376, 1339, 1510, 1793 |
| XceI | RCATGY | 4 cut(s) | 190, 431, 1726, 1747 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 321, 859, 1590 |
| XspI | CTAG | 4 cut(s) | 18, 36, 453, 906 |
| ZraI | GACGTC | 1 cut(s) | 589 |
| Zsp2I | ATGCAT | 2 cut(s) | 6, 1447 |