FvH4_2g12820

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001075
Physical Location & Seq
Reverse (-)
11262840 .. 11267345
4506 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g12820.t2

Sequence Viewer

Length: 1215 bp
ATGGCTCTGTTGCCTGGTTTTCTGGGTGCTTTGCTTCTGTCGTCTCTCGCTGTCCTTTGCATGGTTGAAGGCACTGTCCATTACTACGACTTTGTTTTGAAGGAGAAGAACTTTACAAGATTATGTAGCACCAAGAGCATGCTGGTAGTGAACGATATGCTACCGGGGCCGACGATTCGGGTGCAGAAAGGAGACACCGTCTACGTTAATGTCCAAAACCAAGGAGATTTCGACTTAACTATCCACTGGCATGGAGTGCATCAACCAAGAAACCCATGGTCTGACGGTCCTGAGTACATCACGCAGTGTCCGATCGAACCGGGATCAAATTTTACTTATGAAGTTATATTTTCCGATGAGGAAGGCACACTTTGGTGGCATGCTCACAGTGATTGGACCCGAAATAGTGTAAATGGTGCCATTGTTGTTATGCCTTTAAATGAAACTGGCTTTCCATTTCCTGAACCTGATGGTGAAGAAATTATAGTTCTTGGATCTTGGTATTTTGATGATGTGAACGAGGTAGTCGCTGAGGCCCTTCAAGATGGTACTGACACTCCTCGCTCTGATTGCTATACCATCAATTCACAACCTGGAGATTTCTTCGCATGCTCTAATGACAGTACCCATCGCTGGGAAGTCGAGTATGGCAAGACCTATCTTCTTCGAATGGTCAATGCAGTGATGAATGCAGAGCTCTACTTTGCTATTGCTGAACACAATCTTACTGTTGTTGGCATGGATGGATCATACGTCAAACCTATCGTCACAAACTTTACCATGATTGCTCCTGGACAAACCATGGACATATTGGTCACAGCCAACCAGTCACTTGGGAGGTACTACATGGCTGCTAGACAATATGACAGTGTTAGGCCAGATGTTACCGACTATGACATGTCCAATGTGACTGCAATTCTCGAGTATAAAGGCAATTACACACCCCCAGAACTGCCAATTTTTCCAAGCACCCTCCCTACCTATGAGGATTTGTATTCTGCAGCAGACTTCGCAAGCCGTATAAAGAGCTTGGCAAGCACAGAGCACCCTATAAATGTCCCCCAGAATATAACTACCAGAATGTATATAACGGCTGAGATGAACATGATTACATTTGACAATGGTACGGGTGAGATAACTGGTCTTGGTTCAAGTTTAAATAATGTTAGCTGGCAAGATCCATCAACCGATGTCCTGCTTGCCTACTACAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

405

Amino Acids

45.3

Weight (kDa)

4.41

Isoelectric Point (pI)

36.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 34 - 145 1.2e-39 Multicopper oxidase
Cu-oxidase PF00394 161 - 312 1.1e-33 Multicopper oxidase
Cu-oxidase_2 PF07731 435 - 548 2e-39 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 812
AccB1I GGYRCC 1 cut(s) 416
AccI GTMKAC 1 cut(s) 201
AclWI GGATC 4 cut(s) 331, 502, 754, 1172
AcsI RAATTY 1 cut(s) 328
AdeI CACNNNGTG 1 cut(s) 306
AfaI GTAC 5 cut(s) 296, 550, 625, 842, 1126
AfiI CCNNNNNNNGG 4 cut(s) 61, 633, 634, 1209
AflIII ACRYGT 1 cut(s) 897
AgsI TTSAA 4 cut(s) 68, 100, 542, 1152
AjnI CCWGG 3 cut(s) 13, 592, 790
AleI CACNNNNGTG 1 cut(s) 373
AluBI AGCT 3 cut(s) 697, 1029, 1170
AluI AGCT 3 cut(s) 697, 1029, 1170
Alw21I GWGCWC 2 cut(s) 699, 1047
Alw26I GTCTC 2 cut(s) 48, 186
AlwI GGATC 4 cut(s) 331, 502, 754, 1172
Ama87I CYCGRG 1 cut(s) 920
AoxI GGCC 3 cut(s) 167, 534, 875
ApeKI GCWGC 2 cut(s) 851, 1001
ApoI RAATTY 1 cut(s) 328
ArsI GACNNNNNNTTYG 2 cut(s) 750, 782
AspS9I GGNCC 4 cut(s) 167, 287, 396, 535
AsuC2I CCSGG 2 cut(s) 165, 321
AsuHPI GGTGA 2 cut(s) 485, 1142
AsuII TTCGAA 1 cut(s) 667
AvaI CYCGRG 1 cut(s) 920
AvaII GGWCC 2 cut(s) 287, 396
BanI GGYRCC 1 cut(s) 416
BanII GRGCYC 1 cut(s) 699
Bbv12I GWGCWC 2 cut(s) 699, 1047
BbvCI CCTCAGC 1 cut(s) 531
BbvI GCAGC 2 cut(s) 838, 1013
BccI CCATC 6 cut(s) 464, 539, 587, 636, 737, 1189
BceAI ACGGC 2 cut(s) 1002, 1107
BcgI CGANNNNNNTGC 2 cut(s) 163, 197
BciT130I CCWGG 3 cut(s) 15, 594, 792
BcnI CCSGG 2 cut(s) 165, 321
BcoDI GTCTC 2 cut(s) 48, 186
BfaI CTAG 1 cut(s) 855
BfmI CTRYAG 2 cut(s) 999, 1207
BisI GCNGC 2 cut(s) 852, 1002
BlsI GCNGC 2 cut(s) 853, 1003
Bme1390I CCNGG 5 cut(s) 15, 165, 321, 594, 792
Bme18I GGWCC 2 cut(s) 287, 396
BmeT110I CYCGRG 1 cut(s) 920
BmgT120I GGNCC 4 cut(s) 167, 287, 396, 535
BmiI GGNNCC 3 cut(s) 168, 398, 418
BmrFI CCNGG 5 cut(s) 15, 165, 321, 594, 792
BmsI GCATC 1 cut(s) 268
BpmI CTGGAG 1 cut(s) 615
Bpu10I CCTNAGC 1 cut(s) 531
Bpu14I TTCGAA 1 cut(s) 667
BpuMI CCSGG 2 cut(s) 165, 321
BsaJI CCNNGG 4 cut(s) 164, 220, 275, 801
BsaXI ACNNNNNCTCC 4 cut(s) 183, 213, 541, 571
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 633, 634, 1209
Bse1I ACTGG 4 cut(s) 251, 451, 826, 1144
BseBI CCWGG 3 cut(s) 15, 594, 792
BseDI CCNNGG 4 cut(s) 164, 220, 275, 801
BseGI GGATG 1 cut(s) 748
BseLI CCNNNNNNNGG 4 cut(s) 61, 633, 634, 1209
BseMII CTCAG 3 cut(s) 282, 522, 1086
BseNI ACTGG 4 cut(s) 251, 451, 826, 1144
BseRI GAGGAG 1 cut(s) 549
BseXI GCAGC 2 cut(s) 838, 1013
BseYI CCCAGC 1 cut(s) 633
BsgI GTGCAG 1 cut(s) 203
Bsh1285I CGRYCG 1 cut(s) 315
BshFI GGCC 3 cut(s) 169, 536, 877
BshNI GGYRCC 1 cut(s) 416
BsiEI CGRYCG 1 cut(s) 315
BsiHKAI GWGCWC 2 cut(s) 699, 1047
BsiHKCI CYCGRG 1 cut(s) 920
BsiSI CCGG 2 cut(s) 164, 320
BslFI GGGAC 1 cut(s) 1043
BslI CCNNNNNNNGG 4 cut(s) 61, 633, 634, 1209
BsmAI GTCTC 2 cut(s) 48, 186
BsmBI CGTCTC 1 cut(s) 48
BsmFI GGGAC 1 cut(s) 1043
BsmI GAATGC 1 cut(s) 694
BsnI GGCC 3 cut(s) 169, 536, 877
BsoBI CYCGRG 1 cut(s) 920
Bsp119I TTCGAA 1 cut(s) 667
Bsp1286I GDGCHC 2 cut(s) 699, 1047
Bsp143I GATC 5 cut(s) 312, 323, 494, 746, 1177
Bsp19I CCATGG 2 cut(s) 275, 801
BspANI GGCC 3 cut(s) 169, 536, 877
BspCNI CTCAG 3 cut(s) 283, 523, 1087
BspLI GGNNCC 3 cut(s) 168, 398, 418
BspMAI CTGCAG 1 cut(s) 1003
BspPI GGATC 4 cut(s) 331, 502, 754, 1172
BspT104I TTCGAA 1 cut(s) 667
BspT107I GGYRCC 1 cut(s) 416
BsrI ACTGG 4 cut(s) 251, 451, 826, 1144
BssECI CCNNGG 4 cut(s) 164, 220, 275, 801
BssMI GATC 5 cut(s) 312, 323, 494, 746, 1177
BssT1I CCWWGG 3 cut(s) 220, 275, 801
Bst2UI CCWGG 3 cut(s) 15, 594, 792
Bst4CI ACNGT 7 cut(s) 76, 199, 287, 389, 623, 730, 869
BstAPI GCANNNNNTGC 1 cut(s) 256
BstBI TTCGAA 1 cut(s) 667
BstC8I GCNNGC 7 cut(s) 140, 381, 610, 1015, 1036, 1172, 1200
BstDEI CTNAG 3 cut(s) 291, 531, 1095
BstDSI CCRYGG 2 cut(s) 275, 801
BstENI CCTNNNNNAGG 1 cut(s) 1207
BstF5I GGATG 1 cut(s) 748
BstKTI GATC 5 cut(s) 315, 326, 497, 749, 1180
BstMAI GTCTC 2 cut(s) 48, 186
BstMBI GATC 5 cut(s) 312, 323, 494, 746, 1177
BstMCI CGRYCG 1 cut(s) 315
BstMWI GCNNNNNNNGC 6 cut(s) 135, 166, 256, 570, 1010, 1035
BstNI CCWGG 3 cut(s) 15, 594, 792
BstNSI RCATGY 4 cut(s) 142, 383, 612, 901
BstSCI CCNGG 5 cut(s) 13, 163, 319, 592, 790
BstSFI CTRYAG 2 cut(s) 999, 1207
BstV1I GCAGC 2 cut(s) 838, 1013
BstX2I RGATCY 2 cut(s) 494, 1177
BstXI CCANNNNNNTGG 2 cut(s) 251, 833
BstYI RGATCY 2 cut(s) 494, 1177
BsuRI GGCC 3 cut(s) 169, 536, 877
BtgI CCRYGG 2 cut(s) 275, 801
BtgZI GCGATG 1 cut(s) 614
BtsCI GGATG 1 cut(s) 748
BtsI GCAGTG 2 cut(s) 311, 687
BtsIMutI CAGTG 6 cut(s) 72, 244, 311, 394, 687, 874
Cac8I GCNNGC 7 cut(s) 140, 381, 610, 1015, 1036, 1172, 1200
Cfr13I GGNCC 4 cut(s) 167, 287, 396, 535
Csp6I GTAC 5 cut(s) 295, 549, 624, 841, 1125
CviQI GTAC 5 cut(s) 295, 549, 624, 841, 1125
DdeI CTNAG 3 cut(s) 291, 531, 1095
DpnI GATC 5 cut(s) 314, 325, 496, 748, 1179
DpnII GATC 5 cut(s) 312, 323, 494, 746, 1177
DraI TTTAAA 2 cut(s) 438, 1158
DraIII CACNNNGTG 1 cut(s) 306
DrdI GACNNNNNNGTC 1 cut(s) 812
DseDI GACNNNNNNGTC 1 cut(s) 812
Ecl136II GAGCTC 1 cut(s) 697
Eco130I CCWWGG 3 cut(s) 220, 275, 801
Eco24I GRGCYC 1 cut(s) 699
Eco47I GGWCC 2 cut(s) 287, 396
Eco53kI GAGCTC 1 cut(s) 697
Eco88I CYCGRG 1 cut(s) 920
EcoICRI GAGCTC 1 cut(s) 697
EcoNI CCTNNNNNAGG 1 cut(s) 1207
EcoO109I RGGNCCY 1 cut(s) 535
EcoRII CCWGG 3 cut(s) 13, 592, 790
EcoT14I CCWWGG 3 cut(s) 220, 275, 801
EcoT38I GRGCYC 1 cut(s) 699
ErhI CCWWGG 3 cut(s) 220, 275, 801
Esp3I CGTCTC 1 cut(s) 48
FalI AAGNNNNNCTT 2 cut(s) 354, 386
FaqI GGGAC 1 cut(s) 1043
FblI GTMKAC 1 cut(s) 201
Fnu4HI GCNGC 2 cut(s) 852, 1002
FokI GGATG 1 cut(s) 755
FriOI GRGCYC 1 cut(s) 699
Fsp4HI GCNGC 2 cut(s) 852, 1002
FspBI CTAG 1 cut(s) 855
GluI GCNGC 2 cut(s) 852, 1002
GsaI CCCAGC 1 cut(s) 637
GsuI CTGGAG 1 cut(s) 615
HaeIII GGCC 3 cut(s) 169, 536, 877
HapII CCGG 2 cut(s) 164, 320
HinfI GANTC 1 cut(s) 175
HpaII CCGG 2 cut(s) 164, 320
HphI GGTGA 2 cut(s) 485, 1142
Hpy166II GTNNAC 3 cut(s) 151, 202, 517
Hpy188I TCNGA 4 cut(s) 283, 312, 355, 568
Hpy188III TCNNGA 4 cut(s) 290, 461, 542, 920
Hpy8I GTNNAC 3 cut(s) 151, 202, 517
Hpy99I CGWCG 1 cut(s) 175
HpyAV CCTTC 4 cut(s) 62, 94, 356, 548
HpyCH4III ACNGT 7 cut(s) 76, 199, 287, 389, 623, 730, 869
HpyCH4IV ACGT 2 cut(s) 204, 753
HpyCH4V TGCA 7 cut(s) 60, 184, 259, 680, 692, 914, 1001
HpyF10VI GCNNNNNNNGC 6 cut(s) 135, 166, 256, 570, 1010, 1035
HpyF3I CTNAG 3 cut(s) 291, 531, 1095
HpySE526I ACGT 2 cut(s) 204, 753
Kzo9I GATC 5 cut(s) 312, 323, 494, 746, 1177
LmnI GCTCC 1 cut(s) 793
Lsp1109I GCAGC 2 cut(s) 838, 1013
LweI GCATC 1 cut(s) 268
MaeI CTAG 1 cut(s) 855
MaeII ACGT 2 cut(s) 204, 753
MaeIII GTNAC 5 cut(s) 766, 814, 828, 883, 907
MalI GATC 5 cut(s) 314, 325, 496, 748, 1179
MboI GATC 5 cut(s) 312, 323, 494, 746, 1177
MboII GAAGA 5 cut(s) 118, 488, 595, 653, 656
MflI RGATCY 2 cut(s) 494, 1177
MhlI GDGCHC 2 cut(s) 699, 1047
MluCI AATT 6 cut(s) 328, 480, 583, 915, 934, 957
MnlI CCTC 7 cut(s) 352, 514, 526, 570, 831, 979, 983
MseI TTAA 4 cut(s) 207, 236, 437, 1157
MslI CAYNNNNRTG 2 cut(s) 249, 373
MspI CCGG 2 cut(s) 164, 320
MspR9I CCNGG 5 cut(s) 15, 165, 321, 594, 792
Mva1269I GAATGC 1 cut(s) 694
MvaI CCWGG 3 cut(s) 15, 594, 792
MwoI GCNNNNNNNGC 6 cut(s) 135, 166, 256, 570, 1010, 1035
NciI CCSGG 2 cut(s) 165, 321
NcoI CCATGG 2 cut(s) 275, 801
NdeII GATC 5 cut(s) 312, 323, 494, 746, 1177
NlaIV GGNNCC 3 cut(s) 168, 398, 418
NmuCI GTSAC 4 cut(s) 766, 814, 828, 907
NspI RCATGY 4 cut(s) 142, 383, 612, 901
NspV TTCGAA 1 cut(s) 667
OliI CACNNNNGTG 1 cut(s) 373
PaeI GCATGC 3 cut(s) 142, 383, 612
PaeR7I CTCGAG 1 cut(s) 920
PciI ACATGT 1 cut(s) 897
PcsI WCGNNNNNNNCGW 1 cut(s) 308
PctI GAATGC 1 cut(s) 694
PfeI GAWTC 1 cut(s) 175
PflFI GACNNNGTC 1 cut(s) 197
PfoI TCCNGGA 1 cut(s) 790
PkrI GCNGC 2 cut(s) 853, 1003
Ple19I CGATCG 1 cut(s) 315
PscI ACATGT 1 cut(s) 897
Psp124BI GAGCTC 1 cut(s) 699
Psp6I CCWGG 3 cut(s) 13, 592, 790
PspFI CCCAGC 1 cut(s) 633
PspGI CCWGG 3 cut(s) 13, 592, 790
PspN4I GGNNCC 3 cut(s) 168, 398, 418
PspPI GGNCC 4 cut(s) 167, 287, 396, 535
PstI CTGCAG 1 cut(s) 1003
PsuI RGATCY 2 cut(s) 494, 1177
PsyI GACNNNGTC 1 cut(s) 197
PvuI CGATCG 1 cut(s) 315
RsaI GTAC 5 cut(s) 296, 550, 625, 842, 1126
RsaNI GTAC 5 cut(s) 295, 549, 624, 841, 1125
RseI CAYNNNNRTG 2 cut(s) 249, 373
SacI GAGCTC 1 cut(s) 699
SaqAI TTAA 4 cut(s) 207, 236, 437, 1157
SatI GCNGC 2 cut(s) 852, 1002
Sau3AI GATC 5 cut(s) 312, 323, 494, 746, 1177
Sau96I GGNCC 4 cut(s) 167, 287, 396, 535
ScrFI CCNGG 5 cut(s) 15, 165, 321, 594, 792
SduI GDGCHC 2 cut(s) 699, 1047
SfaNI GCATC 1 cut(s) 268
SfcI CTRYAG 2 cut(s) 999, 1207
Sfr274I CTCGAG 1 cut(s) 920
SfuI TTCGAA 1 cut(s) 667
SinI GGWCC 2 cut(s) 287, 396
SlaI CTCGAG 1 cut(s) 920
SmiMI CAYNNNNRTG 2 cut(s) 249, 373
SmlI CTYRAG 1 cut(s) 920
SmoI CTYRAG 1 cut(s) 920
SphI GCATGC 3 cut(s) 142, 383, 612
Sse9I AATT 6 cut(s) 328, 480, 583, 915, 934, 957
SspMI CTAG 1 cut(s) 855
SstI GAGCTC 1 cut(s) 699
StyD4I CCNGG 5 cut(s) 13, 163, 319, 592, 790
StyI CCWWGG 3 cut(s) 220, 275, 801
TaaI ACNGT 7 cut(s) 76, 199, 287, 389, 623, 730, 869
TaiI ACGT 2 cut(s) 207, 756
TaqI TCGA 5 cut(s) 231, 315, 642, 667, 921
TasI AATT 6 cut(s) 328, 480, 583, 915, 934, 957
TatI WGTACW 1 cut(s) 294
TfiI GAWTC 1 cut(s) 175
Tru1I TTAA 4 cut(s) 207, 236, 437, 1157
Tru9I TTAA 4 cut(s) 207, 236, 437, 1157
TscAI CASTG 6 cut(s) 79, 251, 311, 394, 687, 874
TseFI GTSAC 4 cut(s) 766, 814, 828, 907
TseI GCWGC 2 cut(s) 851, 1001
Tsp45I GTSAC 4 cut(s) 766, 814, 828, 907
TspDTI ATGAA 4 cut(s) 354, 456, 701, 1115
TspRI CASTG 6 cut(s) 79, 251, 311, 394, 687, 874
Tth111I GACNNNGTC 1 cut(s) 197
VpaK11BI GGWCC 2 cut(s) 287, 396
XagI CCTNNNNNAGG 1 cut(s) 1207
XapI RAATTY 1 cut(s) 328
XceI RCATGY 4 cut(s) 142, 383, 612, 901
XcmI CCANNNNNNNNNTGG 3 cut(s) 139, 273, 808
XhoI CTCGAG 1 cut(s) 920
XmiI GTMKAC 1 cut(s) 201
XspI CTAG 1 cut(s) 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.