Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000322.1

Orthogroup ID

OG0007457

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 5540

Gene Structure 5540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000322.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 701 bp

tgctgggctccgtgatgcttatcactcttctttacaccatcttcaccgacggccttcctttccgcctcgacctccttactccgtggatggctgcaaccttggttgacttctatatcaatattgtgcctctagcggcttggtttttctacaaggaatcaaactggattagtgcagcactgtggataatactgctagcgtgttttggaagtttgactacatgcggctacatccttctgcaattgatgaagctttctacgaaagaatcagaagatcctatttactatgttctgttgtgccattcaaacaagtatggtgtggtaaataagcacaagcactcccctgttctgattgccagagttctatttagtgctttggggcttttgatgctgggaactcttctatacactctgtttacagatggttctccttttcgcaaagagctttttactccgtggatgatggcaactctaattgacttttatatcaatgttacagctctttcagtttgggttgcttacaaagaatcaagctggatttctgcagtagtctggatagttttattgatatgttttggcagcattaccacgtgtgtctatatcatccttcagctgtggcagctgacatcccaagatccaatctacctcgttttgtttaaaagtggtgacagggcagaaagcaggtgtgagggggttttgatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1475

Protein Analysis

232

Amino Acids

26.39

Weight (kDa)

6.32

Isoelectric Point (pI)

42.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22750 AT1G22750 AT1G22750 AT1G22750
fragaria_vesca	FvH4_2g12810 FvH4_2g12810 FvH4_2g12810 FvH4_2g12810
malus_domestica	MD10G1038100.v1.1
prunus_persica	Prupe.8G044100_v2.0.a1 Prupe.8G044100_v2.0.a1 Prupe.8G044100_v2.0.a1
pyrus_communis	pycom10g02610
rosa_chinensis	RchiOBHm_Chr6g0273701
rosa_laevigata	RLG00000013597
rosa_multiflora	Rmu_ssc0000322.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195110
rosa_rugosa	Rorug06G0077300 Rorug06G0077400 Rorug06G0077400
rosa_samantha	Rh6AG191700 Rh6BG196000 Rh6CG195300 Rh6DG187100
rosa_wichuraiana	Rw6G016780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	668
Acc36I	ACCTGC	1 cut(s)	668
AciI	CCGC	3 cut(s)	63, 133, 221
AclWI	GGATC	2 cut(s)	265, 625
AcuI	CTGAAG	1 cut(s)	589
AcvI	CACGTG	1 cut(s)	587
AflIII	ACRYGT	1 cut(s)	586
AgsI	TTSAA	1 cut(s)	302
AluBI	AGCT	6 cut(s)	249, 441, 496, 530, 609, 618
AluI	AGCT	6 cut(s)	249, 441, 496, 530, 609, 618
AlwI	GGATC	2 cut(s)	265, 625
AoxI	GGCC	1 cut(s)	51
ApeKI	GCWGC	4 cut(s)	91, 172, 575, 615
AsuHPI	GGTGA	2 cut(s)	36, 673
AsuNHI	GCTAGC	1 cut(s)	192
BanII	GRGCYC	1 cut(s)	10
BarI	GAAGNNNNNNTAC	2 cut(s)	198, 230
BbrPI	CACGTG	1 cut(s)	587
BbvI	GCAGC	4 cut(s)	78, 184, 587, 627
BccI	CCATC	4 cut(s)	46, 81, 412, 453
BceAI	ACGGC	1 cut(s)	66
BfaI	CTAG	2 cut(s)	130, 193
BfmI	CTRYAG	1 cut(s)	539
BfuAI	ACCTGC	1 cut(s)	668
BisI	GCNGC	6 cut(s)	92, 134, 173, 222, 576, 616
BlsI	GCNGC	6 cut(s)	93, 135, 174, 223, 577, 617
BmiI	GGNNCC	1 cut(s)	9
BmsI	GCATC	2 cut(s)	5, 374
BmtI	GCTAGC	1 cut(s)	196
BsaAI	YACGTR	1 cut(s)	587
BsaBI	GATNNNNATC	1 cut(s)	19
BsaJI	CCNNGG	3 cut(s)	82, 98, 451
BsaXI	ACNNNNNCTCC	2 cut(s)	319, 349
Bse1I	ACTGG	1 cut(s)	166
Bse8I	GATNNNNATC	1 cut(s)	19
BseDI	CCNNGG	3 cut(s)	82, 98, 451
BseGI	GGATG	5 cut(s)	92, 227, 461, 599, 622
BseJI	GATNNNNATC	1 cut(s)	19
BseNI	ACTGG	1 cut(s)	166
BseXI	GCAGC	4 cut(s)	78, 184, 587, 627
BseYI	CCCAGC	2 cut(s)	3, 387
BsgI	GTGCAG	1 cut(s)	191
BshFI	GGCC	1 cut(s)	53
BsnI	GGCC	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp143I	GATC	3 cut(s)	270, 630, 695
BspACI	CCGC	3 cut(s)	63, 133, 221
BspANI	GGCC	1 cut(s)	53
BspLI	GGNNCC	1 cut(s)	9
BspMAI	CTGCAG	1 cut(s)	543
BspMI	ACCTGC	1 cut(s)	668
BspOI	GCTAGC	1 cut(s)	196
BspPI	GGATC	2 cut(s)	265, 625
BsrI	ACTGG	1 cut(s)	166
BssECI	CCNNGG	3 cut(s)	82, 98, 451
BssMI	GATC	3 cut(s)	270, 630, 695
BssT1I	CCWWGG	1 cut(s)	98
Bst4CI	ACNGT	1 cut(s)	179
Bst6I	CTCTTC	2 cut(s)	32, 401
BstBAI	YACGTR	1 cut(s)	587
BstC8I	GCNNGC	1 cut(s)	194
BstDSI	CCRYGG	2 cut(s)	82, 451
BstF5I	GGATG	5 cut(s)	92, 227, 461, 599, 622
BstKTI	GATC	3 cut(s)	273, 633, 698
BstMBI	GATC	3 cut(s)	270, 630, 695
BstMWI	GCNNNNNNNGC	2 cut(s)	384, 615
BstNSI	RCATGY	1 cut(s)	221
BstSFI	CTRYAG	1 cut(s)	539
BstV1I	GCAGC	4 cut(s)	78, 184, 587, 627
BstX2I	RGATCY	2 cut(s)	270, 630
BstYI	RGATCY	2 cut(s)	270, 630
BsuRI	GGCC	1 cut(s)	53
BtgI	CCRYGG	2 cut(s)	82, 451
BtsCI	GGATG	5 cut(s)	92, 227, 461, 599, 622
BtsIMutI	CAGTG	1 cut(s)	175
BveI	ACCTGC	1 cut(s)	668
Cac8I	GCNNGC	1 cut(s)	194
CviAII	CATG	1 cut(s)	218
DpnI	GATC	3 cut(s)	272, 632, 697
DpnII	GATC	3 cut(s)	270, 630, 695
DraI	TTTAAA	1 cut(s)	654
Eam1104I	CTCTTC	2 cut(s)	32, 401
EarI	CTCTTC	2 cut(s)	32, 401
EciI	GGCGGA	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	98
Eco24I	GRGCYC	1 cut(s)	10
Eco57I	CTGAAG	1 cut(s)	589
Eco72I	CACGTG	1 cut(s)	587
EcoT14I	CCWWGG	1 cut(s)	98
EcoT38I	GRGCYC	1 cut(s)	10
ErhI	CCWWGG	1 cut(s)	98
FaeI	CATG	1 cut(s)	221
FaiI	YATR	8 cut(s)	113, 219, 284, 311, 402, 482, 567, 596
FatI	CATG	1 cut(s)	217
Fnu4HI	GCNGC	6 cut(s)	92, 134, 173, 222, 576, 616
FokI	GGATG	5 cut(s)	99, 214, 468, 586, 609
FriOI	GRGCYC	1 cut(s)	10
Fsp4HI	GCNGC	6 cut(s)	92, 134, 173, 222, 576, 616
FspBI	CTAG	2 cut(s)	130, 193
GluI	GCNGC	6 cut(s)	92, 134, 173, 222, 576, 616
GsaI	CCCAGC	2 cut(s)	7, 391
HaeIII	GGCC	1 cut(s)	53
Hin1II	CATG	1 cut(s)	221
HincII	GTYRAC	1 cut(s)	105
HindII	GTYRAC	1 cut(s)	105
HindIII	AAGCTT	1 cut(s)	247
HinfI	GANTC	3 cut(s)	154, 262, 523
HphI	GGTGA	2 cut(s)	36, 673
Hpy166II	GTNNAC	2 cut(s)	105, 413
Hpy188I	TCNGA	3 cut(s)	267, 347, 700
Hpy188III	TCNNGA	1 cut(s)	549
Hpy8I	GTNNAC	2 cut(s)	105, 413
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	3 cut(s)	64, 241, 613
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4IV	ACGT	1 cut(s)	586
HpyCH4V	TGCA	4 cut(s)	94, 172, 237, 541
HpyF10VI	GCNNNNNNNGC	2 cut(s)	384, 615
HpySE526I	ACGT	1 cut(s)	586
Hsp92II	CATG	1 cut(s)	221
Kzo9I	GATC	3 cut(s)	270, 630, 695
LmnI	GCTCC	1 cut(s)	13
LpnPI	CCDG	8 cut(s)	147, 353, 366, 373, 516, 534, 651, 663
Lsp1109I	GCAGC	4 cut(s)	78, 184, 587, 627
LweI	GCATC	2 cut(s)	5, 374
MaeI	CTAG	2 cut(s)	130, 193
MaeII	ACGT	1 cut(s)	586
MaeIII	GTNAC	2 cut(s)	489, 661
MalI	GATC	3 cut(s)	272, 632, 697
MboI	GATC	3 cut(s)	270, 630, 695
MboII	GAAGA	4 cut(s)	19, 33, 280, 388
MfeI	CAATTG	1 cut(s)	238
MflI	RGATCY	2 cut(s)	270, 630
MhlI	GDGCHC	1 cut(s)	10
MluCI	AATT	2 cut(s)	238, 470
MnlI	CCTC	5 cut(s)	76, 82, 137, 652, 678
MseI	TTAA	1 cut(s)	653
MspA1I	CMGCKG	2 cut(s)	609, 618
MunI	CAATTG	1 cut(s)	238
MwoI	GCNNNNNNNGC	2 cut(s)	384, 615
NdeII	GATC	3 cut(s)	270, 630, 695
NheI	GCTAGC	1 cut(s)	192
NlaIII	CATG	1 cut(s)	221
NlaIV	GGNNCC	1 cut(s)	9
NmuCI	GTSAC	1 cut(s)	661
NspI	RCATGY	1 cut(s)	221
PaqCI	CACCTGC	1 cut(s)	668
PfeI	GAWTC	3 cut(s)	154, 262, 523
PkrI	GCNGC	6 cut(s)	93, 135, 174, 223, 577, 617
PmaCI	CACGTG	1 cut(s)	587
PmlI	CACGTG	1 cut(s)	587
Ppu21I	YACGTR	1 cut(s)	587
PspCI	CACGTG	1 cut(s)	587
PspFI	CCCAGC	2 cut(s)	3, 387
PspN4I	GGNNCC	1 cut(s)	9
PstI	CTGCAG	1 cut(s)	543
PsuI	RGATCY	2 cut(s)	270, 630
PvuII	CAGCTG	2 cut(s)	609, 618
SaqAI	TTAA	1 cut(s)	653
SatI	GCNGC	6 cut(s)	92, 134, 173, 222, 576, 616
Sau3AI	GATC	3 cut(s)	270, 630, 695
SduI	GDGCHC	1 cut(s)	10
SfaNI	GCATC	2 cut(s)	5, 374
SfcI	CTRYAG	1 cut(s)	539
Sse9I	AATT	2 cut(s)	238, 470
SsiI	CCGC	3 cut(s)	63, 133, 221
SspI	AATATT	1 cut(s)	120
SspMI	CTAG	2 cut(s)	130, 193
StyI	CCWWGG	1 cut(s)	98
TaaI	ACNGT	1 cut(s)	179
TaiI	ACGT	1 cut(s)	589
TaqI	TCGA	1 cut(s)	68
TasI	AATT	2 cut(s)	238, 470
TauI	GCSGC	2 cut(s)	136, 224
TfiI	GAWTC	3 cut(s)	154, 262, 523
Tru1I	TTAA	1 cut(s)	653
Tru9I	TTAA	1 cut(s)	653
TscAI	CASTG	1 cut(s)	182
TseFI	GTSAC	1 cut(s)	661
TseI	GCWGC	4 cut(s)	91, 172, 575, 615
Tsp45I	GTSAC	1 cut(s)	661
TspDTI	ATGAA	1 cut(s)	259
TspGWI	ACGGA	2 cut(s)	71, 440
TspRI	CASTG	1 cut(s)	182
XceI	RCATGY	1 cut(s)	221
XspI	CTAG	2 cut(s)	130, 193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.