Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0007457

Physical Location & Seq

Genomic Coordinates Forward (+)

33074440 .. 33079853

Gene Structure 5414 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G016780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCGATTTCGTTGGCGACCGTTTTGAGAAGTCTGTTTGCAGTGCTGAGCTCCGTGATGCTTATCACTCTTCTTTACACCATCTTCACCGACGGCCTTCCCTTCCGCCTCGACCTCCTTACTCCGTGGATGGCTGCAACCTTGGTTGATTTCTATATCAATATTGTGCCAATAGCGGCTTGGTTTTTCTACAAGGAATCAAACTGGATTAGTGCAGCACTGTGGATAATACTGCTAGCATGTTTTGGAAGTTTGACTACATGCGGCTACATCCTTCTGCAATTGATGAAGCTTTCTACGAAAGAATCAGAAGATCCTATTTACTATGTTCTGTTGTGCCATTCAAACAAGTATGGTGTGGTAAATAAGCACAAGCACTCCCCTGTTCTGATTGCCAGAGTTCTATTTAGTGCTTTGGGGCTTTTGATGCTGGGAACTCTTCTATACACTCTGTTTACAGATGGTTCTCCTTTTCGCAAAGAGCTTTTTACTCCGTGGATGATGGCAACTCTAATTGACTTTTATATCAATGTTACAGCTCTTTCAGTTTGGGTTGCTTACAAAGAATCAAGCTGGATTTCTGCAGTAGTCTGGATAGTTTTATTGATATGTTTTGGCAGCATTACCACGTGTGTCTATATCATCCTTCAGCTGTGGCAGCTGACATCCCAAGATCCAATCTACCTCGTTTTGTTTAAAAGTGGTGACAGGGCAGAAAGCAGGTGTGAGGGGGTTTTGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1475

Protein Analysis

247

Amino Acids

27.99

Weight (kDa)

6.8

Isoelectric Point (pI)

44.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1475	PF07343	5 - 117	7.8e-41	Protein of unknown function (DUF1475)
DUF1475	PF07343	119 - 236	1.2e-46	Protein of unknown function (DUF1475)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22750 AT1G22750 AT1G22750 AT1G22750
fragaria_vesca	FvH4_2g12810 FvH4_2g12810 FvH4_2g12810 FvH4_2g12810
malus_domestica	MD10G1038100.v1.1
prunus_persica	Prupe.8G044100_v2.0.a1 Prupe.8G044100_v2.0.a1 Prupe.8G044100_v2.0.a1
pyrus_communis	pycom10g02610
rosa_chinensis	RchiOBHm_Chr6g0273701
rosa_laevigata	RLG00000013597
rosa_multiflora	Rmu_ssc0000322.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195110
rosa_rugosa	Rorug06G0077300 Rorug06G0077400 Rorug06G0077400
rosa_samantha	Rh6AG191700 Rh6BG196000 Rh6CG195300 Rh6DG187100
rosa_wichuraiana	Rw6G016780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	711
Acc36I	ACCTGC	1 cut(s)	711
AciI	CCGC	3 cut(s)	106, 176, 264
AclWI	GGATC	2 cut(s)	308, 668
AcuI	CTGAAG	1 cut(s)	632
AcvI	CACGTG	1 cut(s)	630
AflIII	ACRYGT	1 cut(s)	629
AgsI	TTSAA	1 cut(s)	345
AluBI	AGCT	7 cut(s)	51, 292, 484, 539, 573, 652, 661
AluI	AGCT	7 cut(s)	51, 292, 484, 539, 573, 652, 661
Alw21I	GWGCWC	1 cut(s)	53
AlwI	GGATC	2 cut(s)	308, 668
AoxI	GGCC	1 cut(s)	94
ApeKI	GCWGC	4 cut(s)	134, 215, 618, 658
AsuHPI	GGTGA	2 cut(s)	79, 716
AsuNHI	GCTAGC	1 cut(s)	235
BanII	GRGCYC	1 cut(s)	53
BarI	GAAGNNNNNNTAC	2 cut(s)	241, 273
BbrPI	CACGTG	1 cut(s)	630
Bbv12I	GWGCWC	1 cut(s)	53
BbvI	GCAGC	4 cut(s)	121, 227, 630, 670
BccI	CCATC	4 cut(s)	89, 124, 455, 496
BceAI	ACGGC	1 cut(s)	109
BfaI	CTAG	1 cut(s)	236
BfmI	CTRYAG	1 cut(s)	582
BfuAI	ACCTGC	1 cut(s)	711
BisI	GCNGC	6 cut(s)	135, 177, 216, 265, 619, 659
BlpI	GCTNAGC	1 cut(s)	47
BlsI	GCNGC	6 cut(s)	136, 178, 217, 266, 620, 660
BmsI	GCATC	2 cut(s)	48, 417
BmtI	GCTAGC	1 cut(s)	239
Bpu1102I	GCTNAGC	1 cut(s)	47
BsaAI	YACGTR	1 cut(s)	630
BsaBI	GATNNNNATC	1 cut(s)	62
BsaJI	CCNNGG	3 cut(s)	125, 141, 494
BsaXI	ACNNNNNCTCC	2 cut(s)	362, 392
Bse1I	ACTGG	1 cut(s)	209
Bse8I	GATNNNNATC	1 cut(s)	62
BseDI	CCNNGG	3 cut(s)	125, 141, 494
BseGI	GGATG	5 cut(s)	135, 270, 504, 642, 665
BseJI	GATNNNNATC	1 cut(s)	62
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	1 cut(s)	209
BseXI	GCAGC	4 cut(s)	121, 227, 630, 670
BseYI	CCCAGC	1 cut(s)	430
BsgI	GTGCAG	1 cut(s)	234
Bsh1285I	CGRYCG	1 cut(s)	21
BshFI	GGCC	1 cut(s)	96
BsiEI	CGRYCG	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	53
BsnI	GGCC	1 cut(s)	96
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	3 cut(s)	313, 673, 738
Bsp1720I	GCTNAGC	1 cut(s)	47
BspACI	CCGC	3 cut(s)	106, 176, 264
BspANI	GGCC	1 cut(s)	96
BspCNI	CTCAG	1 cut(s)	39
BspMAI	CTGCAG	1 cut(s)	586
BspMI	ACCTGC	1 cut(s)	711
BspOI	GCTAGC	1 cut(s)	239
BspPI	GGATC	2 cut(s)	308, 668
BsrI	ACTGG	1 cut(s)	209
BssECI	CCNNGG	3 cut(s)	125, 141, 494
BssMI	GATC	3 cut(s)	313, 673, 738
BssT1I	CCWWGG	1 cut(s)	141
Bst4CI	ACNGT	2 cut(s)	22, 222
Bst6I	CTCTTC	2 cut(s)	75, 444
BstBAI	YACGTR	1 cut(s)	630
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	1 cut(s)	47
BstDSI	CCRYGG	2 cut(s)	125, 494
BstF5I	GGATG	5 cut(s)	135, 270, 504, 642, 665
BstKTI	GATC	3 cut(s)	316, 676, 741
BstMBI	GATC	3 cut(s)	313, 673, 738
BstMCI	CGRYCG	1 cut(s)	21
BstMWI	GCNNNNNNNGC	2 cut(s)	427, 658
BstNSI	RCATGY	2 cut(s)	243, 264
BstSFI	CTRYAG	1 cut(s)	582
BstV1I	GCAGC	4 cut(s)	121, 227, 630, 670
BstX2I	RGATCY	2 cut(s)	313, 673
BstYI	RGATCY	2 cut(s)	313, 673
BsuRI	GGCC	1 cut(s)	96
BtgI	CCRYGG	2 cut(s)	125, 494
BtsCI	GGATG	5 cut(s)	135, 270, 504, 642, 665
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	2 cut(s)	48, 218
BveI	ACCTGC	1 cut(s)	711
Cac8I	GCNNGC	1 cut(s)	237
CviAII	CATG	2 cut(s)	240, 261
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	3 cut(s)	315, 675, 740
DpnII	GATC	3 cut(s)	313, 673, 738
DraI	TTTAAA	1 cut(s)	697
Eam1104I	CTCTTC	2 cut(s)	75, 444
EarI	CTCTTC	2 cut(s)	75, 444
EciI	GGCGGA	1 cut(s)	95
Ecl136II	GAGCTC	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	53
Eco53kI	GAGCTC	1 cut(s)	51
Eco57I	CTGAAG	1 cut(s)	632
Eco72I	CACGTG	1 cut(s)	630
EcoICRI	GAGCTC	1 cut(s)	51
EcoT14I	CCWWGG	1 cut(s)	141
EcoT38I	GRGCYC	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	2 cut(s)	243, 264
FaiI	YATR	9 cut(s)	156, 241, 262, 327, 354, 445, 525, 610, 639
FatI	CATG	2 cut(s)	239, 260
Fnu4HI	GCNGC	6 cut(s)	135, 177, 216, 265, 619, 659
FokI	GGATG	5 cut(s)	142, 257, 511, 629, 652
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	6 cut(s)	135, 177, 216, 265, 619, 659
FspBI	CTAG	1 cut(s)	236
GluI	GCNGC	6 cut(s)	135, 177, 216, 265, 619, 659
GsaI	CCCAGC	1 cut(s)	434
HaeIII	GGCC	1 cut(s)	96
Hin1II	CATG	2 cut(s)	243, 264
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	3 cut(s)	197, 305, 566
HphI	GGTGA	2 cut(s)	79, 716
Hpy166II	GTNNAC	1 cut(s)	456
Hpy188I	TCNGA	3 cut(s)	310, 390, 743
Hpy188III	TCNNGA	1 cut(s)	592
Hpy8I	GTNNAC	1 cut(s)	456
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	4 cut(s)	107, 112, 284, 656
HpyCH4III	ACNGT	2 cut(s)	22, 222
HpyCH4IV	ACGT	1 cut(s)	629
HpyCH4V	TGCA	5 cut(s)	41, 137, 215, 280, 584
HpyF10VI	GCNNNNNNNGC	2 cut(s)	427, 658
HpyF3I	CTNAG	1 cut(s)	47
HpySE526I	ACGT	1 cut(s)	629
Hsp92II	CATG	2 cut(s)	243, 264
Kzo9I	GATC	3 cut(s)	313, 673, 738
LmnI	GCTCC	1 cut(s)	56
LpnPI	CCDG	8 cut(s)	190, 396, 409, 416, 559, 577, 694, 706
Lsp1109I	GCAGC	4 cut(s)	121, 227, 630, 670
LweI	GCATC	2 cut(s)	48, 417
MaeI	CTAG	1 cut(s)	236
MaeII	ACGT	1 cut(s)	629
MaeIII	GTNAC	2 cut(s)	532, 704
MalI	GATC	3 cut(s)	315, 675, 740
MboI	GATC	3 cut(s)	313, 673, 738
MboII	GAAGA	4 cut(s)	62, 76, 323, 431
MfeI	CAATTG	1 cut(s)	281
MflI	RGATCY	2 cut(s)	313, 673
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	2 cut(s)	281, 513
MnlI	CCTC	4 cut(s)	119, 125, 695, 721
MseI	TTAA	1 cut(s)	696
MspA1I	CMGCKG	2 cut(s)	652, 661
MunI	CAATTG	1 cut(s)	281
MwoI	GCNNNNNNNGC	2 cut(s)	427, 658
NdeII	GATC	3 cut(s)	313, 673, 738
NheI	GCTAGC	1 cut(s)	235
NlaIII	CATG	2 cut(s)	243, 264
NmuCI	GTSAC	1 cut(s)	704
NspI	RCATGY	2 cut(s)	243, 264
PaqCI	CACCTGC	1 cut(s)	711
PfeI	GAWTC	3 cut(s)	197, 305, 566
PkrI	GCNGC	6 cut(s)	136, 178, 217, 266, 620, 660
PmaCI	CACGTG	1 cut(s)	630
PmlI	CACGTG	1 cut(s)	630
Ppu21I	YACGTR	1 cut(s)	630
Psp124BI	GAGCTC	1 cut(s)	53
PspCI	CACGTG	1 cut(s)	630
PspFI	CCCAGC	1 cut(s)	430
PstI	CTGCAG	1 cut(s)	586
PsuI	RGATCY	2 cut(s)	313, 673
PvuII	CAGCTG	2 cut(s)	652, 661
SacI	GAGCTC	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	696
SatI	GCNGC	6 cut(s)	135, 177, 216, 265, 619, 659
Sau3AI	GATC	3 cut(s)	313, 673, 738
SduI	GDGCHC	1 cut(s)	53
SfaNI	GCATC	2 cut(s)	48, 417
SfcI	CTRYAG	1 cut(s)	582
Sse9I	AATT	2 cut(s)	281, 513
SsiI	CCGC	3 cut(s)	106, 176, 264
SspI	AATATT	1 cut(s)	163
SspMI	CTAG	1 cut(s)	236
SstI	GAGCTC	1 cut(s)	53
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	2 cut(s)	22, 222
TaiI	ACGT	1 cut(s)	632
TaqI	TCGA	1 cut(s)	111
TasI	AATT	2 cut(s)	281, 513
TauI	GCSGC	2 cut(s)	179, 267
TfiI	GAWTC	3 cut(s)	197, 305, 566
Tru1I	TTAA	1 cut(s)	696
Tru9I	TTAA	1 cut(s)	696
TscAI	CASTG	2 cut(s)	48, 225
TseFI	GTSAC	1 cut(s)	704
TseI	GCWGC	4 cut(s)	134, 215, 618, 658
Tsp45I	GTSAC	1 cut(s)	704
TspDTI	ATGAA	1 cut(s)	302
TspGWI	ACGGA	3 cut(s)	43, 114, 483
TspRI	CASTG	2 cut(s)	48, 225
XceI	RCATGY	2 cut(s)	243, 264
XcmI	CCANNNNNNNNNTGG	1 cut(s)	177
XspI	CTAG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.