Rroxscaffold_7G00195110

Protein of unknown function (DUF1475)

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
37309458 .. 37315470
6013 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00195110.1

Sequence Viewer

Length: 567 bp
ATGGCGATTTCGTTGGTGACCGTTTTGAGAAGTCTGTTTGCACTGCTGGGCTCCGTGATGCTGATCACTCTTCTTTACACCATCTTCACCGACGGCCTTCCTTTCCGCCTCGACCTCCTTACTCCGTGGATGGCTGCAACCTTGGTTGATTTCTATATCAATACTGTGCCTATAGCGGCTTGGTTTTTCTACAAGGAGTCAAACTGGATTAGTGCAGCACTGTGGATAATACTGCTAGCATGTTTTGGAAGTTTGACTACATGCGGCTACATCCTTCTGCAATTGATGAAGCTTTCTACGAAAGAATCAGAAGATCCCATTTTCTATGTTCTGTTGTGCCATTCAAACAAGTATGGTGTGGTAAATAAGCACAAGCACTCCACTGTTCTGATTGCCAGAGTTCTATTTAGTGCTTTGGGGCTTTTGATGCTGGGAACTCTTCTATACACTCTGTTTACAGATGGTTCTCCTTTTCGCAAAGAGCTTTTTACTCCGTGGATGATGGCAACTCTAATTGACTTTTATATCAATGTTACAGCTCTTTCAGTATGTCTCAGATCTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

188

Amino Acids

21.24

Weight (kDa)

8.35

Isoelectric Point (pI)

45.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1475 PF07343 4 - 117 1.4e-41 Protein of unknown function (DUF1475)
DUF1475 PF07343 123 - 183 1.8e-20 Protein of unknown function (DUF1475)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 106, 176, 264
AclWI GGATC 1 cut(s) 308
AgsI TTSAA 1 cut(s) 345
AluBI AGCT 3 cut(s) 292, 484, 539
AluI AGCT 3 cut(s) 292, 484, 539
Alw26I GTCTC 1 cut(s) 557
AlwI GGATC 1 cut(s) 308
AoxI GGCC 1 cut(s) 94
ApeKI GCWGC 2 cut(s) 134, 215
AsuHPI GGTGA 2 cut(s) 28, 79
AsuNHI GCTAGC 1 cut(s) 235
BanII GRGCYC 1 cut(s) 53
BarI GAAGNNNNNNTAC 2 cut(s) 241, 273
BbvI GCAGC 2 cut(s) 121, 227
BccI CCATC 4 cut(s) 89, 124, 455, 496
BceAI ACGGC 1 cut(s) 109
BclI TGATCA 1 cut(s) 63
BcoDI GTCTC 1 cut(s) 557
BfaI CTAG 1 cut(s) 236
BfmI CTRYAG 1 cut(s) 171
BglII AGATCT 1 cut(s) 557
BisI GCNGC 4 cut(s) 135, 177, 216, 265
BlsI GCNGC 4 cut(s) 136, 178, 217, 266
BmiI GGNNCC 1 cut(s) 52
BmsI GCATC 2 cut(s) 48, 417
BmtI GCTAGC 1 cut(s) 239
BsaBI GATNNNNATC 1 cut(s) 62
BsaJI CCNNGG 3 cut(s) 125, 141, 494
BsaXI ACNNNNNCTCC 2 cut(s) 362, 392
Bse1I ACTGG 1 cut(s) 209
Bse8I GATNNNNATC 1 cut(s) 62
BseDI CCNNGG 3 cut(s) 125, 141, 494
BseGI GGATG 3 cut(s) 135, 270, 504
BseJI GATNNNNATC 1 cut(s) 62
BseNI ACTGG 1 cut(s) 209
BseXI GCAGC 2 cut(s) 121, 227
BseYI CCCAGC 2 cut(s) 46, 430
BsgI GTGCAG 1 cut(s) 234
BshFI GGCC 1 cut(s) 96
BsmAI GTCTC 1 cut(s) 557
BsnI GGCC 1 cut(s) 96
Bsp1286I GDGCHC 1 cut(s) 53
Bsp143I GATC 3 cut(s) 63, 313, 557
BspACI CCGC 3 cut(s) 106, 176, 264
BspANI GGCC 1 cut(s) 96
BspCNI CTCAG 1 cut(s) 567
BspLI GGNNCC 1 cut(s) 52
BspOI GCTAGC 1 cut(s) 239
BspPI GGATC 1 cut(s) 308
BsrI ACTGG 1 cut(s) 209
BssECI CCNNGG 3 cut(s) 125, 141, 494
BssMI GATC 3 cut(s) 63, 313, 557
BssT1I CCWWGG 1 cut(s) 141
Bst4CI ACNGT 4 cut(s) 22, 166, 222, 385
Bst6I CTCTTC 2 cut(s) 75, 444
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 1 cut(s) 554
BstDSI CCRYGG 2 cut(s) 125, 494
BstEII GGTNACC 1 cut(s) 16
BstF5I GGATG 3 cut(s) 135, 270, 504
BstKTI GATC 3 cut(s) 66, 316, 560
BstMAI GTCTC 1 cut(s) 557
BstMBI GATC 3 cut(s) 63, 313, 557
BstMWI GCNNNNNNNGC 1 cut(s) 427
BstNSI RCATGY 2 cut(s) 243, 264
BstPI GGTNACC 1 cut(s) 16
BstSFI CTRYAG 1 cut(s) 171
BstV1I GCAGC 2 cut(s) 121, 227
BstX2I RGATCY 2 cut(s) 313, 557
BstYI RGATCY 2 cut(s) 313, 557
BsuRI GGCC 1 cut(s) 96
BtgI CCRYGG 2 cut(s) 125, 494
BtsCI GGATG 3 cut(s) 135, 270, 504
BtsI GCAGTG 1 cut(s) 41
BtsIMutI CAGTG 3 cut(s) 41, 218, 381
Cac8I GCNNGC 1 cut(s) 237
CviAII CATG 2 cut(s) 240, 261
CviJI RGCY 9 cut(s) 51, 96, 134, 179, 267, 292, 421, 484, 539
CviKI_1 RGCY 9 cut(s) 51, 96, 134, 179, 267, 292, 421, 484, 539
DdeI CTNAG 1 cut(s) 554
DpnI GATC 3 cut(s) 65, 315, 559
DpnII GATC 3 cut(s) 63, 313, 557
Eam1104I CTCTTC 2 cut(s) 75, 444
EarI CTCTTC 2 cut(s) 75, 444
EciI GGCGGA 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 141
Eco24I GRGCYC 1 cut(s) 53
Eco91I GGTNACC 1 cut(s) 16
EcoO65I GGTNACC 1 cut(s) 16
EcoT14I CCWWGG 1 cut(s) 141
EcoT38I GRGCYC 1 cut(s) 53
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 2 cut(s) 243, 264
FaiI YATR 9 cut(s) 156, 173, 241, 262, 327, 354, 445, 525, 550
FatI CATG 2 cut(s) 239, 260
FbaI TGATCA 1 cut(s) 63
Fnu4HI GCNGC 4 cut(s) 135, 177, 216, 265
FokI GGATG 3 cut(s) 142, 257, 511
FriOI GRGCYC 1 cut(s) 53
Fsp4HI GCNGC 4 cut(s) 135, 177, 216, 265
FspBI CTAG 1 cut(s) 236
GluI GCNGC 4 cut(s) 135, 177, 216, 265
GsaI CCCAGC 2 cut(s) 50, 434
HaeIII GGCC 1 cut(s) 96
Hin1II CATG 2 cut(s) 243, 264
HindIII AAGCTT 1 cut(s) 290
HinfI GANTC 2 cut(s) 197, 305
HphI GGTGA 2 cut(s) 28, 79
Hpy166II GTNNAC 1 cut(s) 456
Hpy188I TCNGA 3 cut(s) 310, 390, 557
Hpy8I GTNNAC 1 cut(s) 456
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 2 cut(s) 107, 284
HpyCH4III ACNGT 4 cut(s) 22, 166, 222, 385
HpyCH4V TGCA 4 cut(s) 41, 137, 215, 280
HpyF10VI GCNNNNNNNGC 1 cut(s) 427
HpyF3I CTNAG 1 cut(s) 554
Hsp92II CATG 2 cut(s) 243, 264
Ksp22I TGATCA 1 cut(s) 63
Kzo9I GATC 3 cut(s) 63, 313, 557
LmnI GCTCC 1 cut(s) 56
LpnPI CCDG 4 cut(s) 32, 190, 409, 416
Lsp1109I GCAGC 2 cut(s) 121, 227
LweI GCATC 2 cut(s) 48, 417
MaeI CTAG 1 cut(s) 236
MaeIII GTNAC 2 cut(s) 16, 532
MalI GATC 3 cut(s) 65, 315, 559
MboI GATC 3 cut(s) 63, 313, 557
MboII GAAGA 4 cut(s) 62, 76, 323, 431
MfeI CAATTG 1 cut(s) 281
MflI RGATCY 2 cut(s) 313, 557
MhlI GDGCHC 1 cut(s) 53
MluCI AATT 2 cut(s) 281, 513
MlyI GAGTC 1 cut(s) 206
MnlI CCTC 2 cut(s) 119, 125
MseI TTAA 1 cut(s) 565
MunI CAATTG 1 cut(s) 281
MwoI GCNNNNNNNGC 1 cut(s) 427
NdeII GATC 3 cut(s) 63, 313, 557
NheI GCTAGC 1 cut(s) 235
NlaIII CATG 2 cut(s) 243, 264
NlaIV GGNNCC 1 cut(s) 52
NmuCI GTSAC 1 cut(s) 16
NspI RCATGY 2 cut(s) 243, 264
PfeI GAWTC 1 cut(s) 305
PkrI GCNGC 4 cut(s) 136, 178, 217, 266
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
PspEI GGTNACC 1 cut(s) 16
PspFI CCCAGC 2 cut(s) 46, 430
PspN4I GGNNCC 1 cut(s) 52
PsuI RGATCY 2 cut(s) 313, 557
SaqAI TTAA 1 cut(s) 565
SatI GCNGC 4 cut(s) 135, 177, 216, 265
Sau3AI GATC 3 cut(s) 63, 313, 557
SchI GAGTC 1 cut(s) 206
SduI GDGCHC 1 cut(s) 53
SetI ASST 5 cut(s) 117, 143, 294, 486, 541
SfaNI GCATC 2 cut(s) 48, 417
SfcI CTRYAG 1 cut(s) 171
Sse9I AATT 2 cut(s) 281, 513
SsiI CCGC 3 cut(s) 106, 176, 264
SspMI CTAG 1 cut(s) 236
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 4 cut(s) 22, 166, 222, 385
TaqI TCGA 1 cut(s) 111
TasI AATT 2 cut(s) 281, 513
TauI GCSGC 2 cut(s) 179, 267
TfiI GAWTC 1 cut(s) 305
Tru1I TTAA 1 cut(s) 565
Tru9I TTAA 1 cut(s) 565
TscAI CASTG 3 cut(s) 48, 225, 388
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 2 cut(s) 134, 215
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 1 cut(s) 302
TspGWI ACGGA 3 cut(s) 43, 114, 483
TspRI CASTG 3 cut(s) 48, 225, 388
XceI RCATGY 2 cut(s) 243, 264
XspI CTAG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.