Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0007457

Physical Location & Seq

Genomic Coordinates Reverse (-)

2949076 .. 2955230

Gene Structure 6155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g02610.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCGAATTCTTTGGTGATTGGCTTAAGAGTTCTGTTTGCAGCTTTGGGCTGCGCGATGACCGTCACTCTCGTTTACACTCTCTCCGTCGACGGCCTTCCCTTTCGCAAGGACCTTCTTACTCCGTGGATGGTCGCTACCTTGATTGATTTCTACATCAATGTTGTTCCTTTGGCGATTTGGATTTCCTACAAGGAGTCAAACTGGATTATTGCTACGTTATGGGTTATACTACTAGTATGCTTTGGAAGTATCACTACATGTGCCTACATTCTGTTGCAATTTATGAAGCTATCGACTGCAGAATCGCAAGATCCTATGTACTATGTTCTGTTGCGACATTCAAACGGTTATGGTATGGAAAGTAAGAAGAAGTGCTCCCACGTTATGATTGCAAGAGTTACCTTTATTGCTTTGGGTCTCTTGATGCTGGGAACACTTCTGTACACTCTCTTAACAGATGGTACTCCTTTTCGCACAGAGCTTTTGACTCCGTGGATGACAGCAACACTTATTGACTTTTACATCAATGTTGTTGCTCTATCAGTTTGGGTTGTCTACAAAGAATCAAGTTGGACTACTGCAGCTCCTTGGATAATCTTTTTGATAAGTTTTGGCAGCATTACCACGTGTACCTATATTGTCCGGCAGCTGTTTCTGTTGACATCCCAAGATCCACTCTATGTTGTTCTACTAAGAAGTGGTAGTAGGGCAGAAAGCAGAAGTGACGGAGCTTTGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1475

Protein Analysis

248

Amino Acids

27.73

Weight (kDa)

8.24

Isoelectric Point (pI)

34.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22750 AT1G22750 AT1G22750 AT1G22750
fragaria_vesca	FvH4_2g12810 FvH4_2g12810 FvH4_2g12810 FvH4_2g12810
malus_domestica	MD10G1038100.v1.1
prunus_persica	Prupe.8G044100_v2.0.a1 Prupe.8G044100_v2.0.a1 Prupe.8G044100_v2.0.a1
pyrus_communis	pycom10g02610
rosa_chinensis	RchiOBHm_Chr6g0273701
rosa_laevigata	RLG00000013597
rosa_multiflora	Rmu_ssc0000322.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195110
rosa_rugosa	Rorug06G0077300 Rorug06G0077400 Rorug06G0077400
rosa_samantha	Rh6AG191700 Rh6BG196000 Rh6CG195300 Rh6DG187100
rosa_wichuraiana	Rw6G016780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	90, 558
AccII	CGCG	1 cut(s)	56
AclWI	GGATC	2 cut(s)	308, 668
AcsI	RAATTY	1 cut(s)	7
AcvI	CACGTG	1 cut(s)	630
AfaI	GTAC	4 cut(s)	323, 446, 466, 634
AflII	CTTAAG	1 cut(s)	25
AflIII	ACRYGT	2 cut(s)	260, 629
AgsI	TTSAA	1 cut(s)	345
AhlI	ACTAGT	1 cut(s)	235
AluBI	AGCT	6 cut(s)	44, 292, 484, 587, 652, 734
AluI	AGCT	6 cut(s)	44, 292, 484, 587, 652, 734
Alw21I	GWGCWC	1 cut(s)	380
Alw26I	GTCTC	1 cut(s)	425
AlwI	GGATC	2 cut(s)	308, 668
AoxI	GGCC	1 cut(s)	94
ApeKI	GCWGC	5 cut(s)	41, 51, 584, 618, 649
ApoI	RAATTY	1 cut(s)	7
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	1 cut(s)	112
AsuHPI	GGTGA	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	112
BarI	GAAGNNNNNNTAC	2 cut(s)	241, 273
BbrPI	CACGTG	1 cut(s)	630
Bbv12I	GWGCWC	1 cut(s)	380
BbvI	GCAGC	5 cut(s)	38, 53, 596, 630, 661
BccI	CCATC	2 cut(s)	124, 455
BceAI	ACGGC	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	425
BcuI	ACTAGT	1 cut(s)	235
BfaI	CTAG	1 cut(s)	236
BfmI	CTRYAG	2 cut(s)	300, 582
BfrI	CTTAAG	1 cut(s)	25
BisI	GCNGC	5 cut(s)	42, 52, 585, 619, 650
BlsI	GCNGC	5 cut(s)	43, 53, 586, 620, 651
Bme18I	GGWCC	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	112
BmsI	GCATC	1 cut(s)	417
BsaAI	YACGTR	1 cut(s)	630
BsaI	GGTCTC	1 cut(s)	425
BsaJI	CCNNGG	3 cut(s)	125, 494, 590
BsaXI	ACNNNNNCTCC	4 cut(s)	68, 98, 571, 601
Bse1I	ACTGG	1 cut(s)	209
BseDI	CCNNGG	3 cut(s)	125, 494, 590
BseGI	GGATG	3 cut(s)	135, 504, 665
BseNI	ACTGG	1 cut(s)	209
BseXI	GCAGC	5 cut(s)	38, 53, 596, 630, 661
BseYI	CCCAGC	1 cut(s)	430
Bsh1236I	CGCG	1 cut(s)	56
BshFI	GGCC	1 cut(s)	96
BsiHKAI	GWGCWC	1 cut(s)	380
BsiSI	CCGG	1 cut(s)	646
BsmAI	GTCTC	1 cut(s)	425
BsnI	GGCC	1 cut(s)	96
Bso31I	GGTCTC	1 cut(s)	425
Bsp1286I	GDGCHC	1 cut(s)	380
Bsp1407I	TGTACA	1 cut(s)	444
Bsp143I	GATC	3 cut(s)	313, 673, 738
BspANI	GGCC	1 cut(s)	96
BspFNI	CGCG	1 cut(s)	56
BspMAI	CTGCAG	2 cut(s)	304, 586
BspPI	GGATC	2 cut(s)	308, 668
BspTI	CTTAAG	1 cut(s)	25
BspTNI	GGTCTC	1 cut(s)	425
BsrGI	TGTACA	1 cut(s)	444
BsrI	ACTGG	1 cut(s)	209
BssECI	CCNNGG	3 cut(s)	125, 494, 590
BssMI	GATC	3 cut(s)	313, 673, 738
BssT1I	CCWWGG	1 cut(s)	590
Bst4CI	ACNGT	2 cut(s)	64, 350
BstAFI	CTTAAG	1 cut(s)	25
BstAUI	TGTACA	1 cut(s)	444
BstBAI	YACGTR	1 cut(s)	630
BstDEI	CTNAG	1 cut(s)	695
BstDSI	CCRYGG	2 cut(s)	125, 494
BstF5I	GGATG	3 cut(s)	135, 504, 665
BstFNI	CGCG	1 cut(s)	56
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	3 cut(s)	316, 676, 741
BstMAI	GTCTC	1 cut(s)	425
BstMBI	GATC	3 cut(s)	313, 673, 738
BstNSI	RCATGY	1 cut(s)	264
BstSFI	CTRYAG	2 cut(s)	300, 582
BstUI	CGCG	1 cut(s)	56
BstV1I	GCAGC	5 cut(s)	38, 53, 596, 630, 661
BstX2I	RGATCY	2 cut(s)	313, 673
BstYI	RGATCY	2 cut(s)	313, 673
BsuRI	GGCC	1 cut(s)	96
BtgI	CCRYGG	2 cut(s)	125, 494
BtgZI	GCGATG	1 cut(s)	71
BtsCI	GGATG	3 cut(s)	135, 504, 665
CfoI	GCGC	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	112
Csp6I	GTAC	4 cut(s)	322, 445, 465, 633
CviAII	CATG	1 cut(s)	261
CviJI	RGCY	9 cut(s)	24, 44, 51, 96, 292, 484, 587, 652, 734
CviKI_1	RGCY	9 cut(s)	24, 44, 51, 96, 292, 484, 587, 652, 734
CviQI	GTAC	4 cut(s)	322, 445, 465, 633
DdeI	CTNAG	1 cut(s)	695
DpnI	GATC	3 cut(s)	315, 675, 740
DpnII	GATC	3 cut(s)	313, 673, 738
Eco130I	CCWWGG	1 cut(s)	590
Eco31I	GGTCTC	1 cut(s)	425
Eco47I	GGWCC	1 cut(s)	112
Eco72I	CACGTG	1 cut(s)	630
EcoO109I	RGGNCCY	1 cut(s)	112
EcoRI	GAATTC	1 cut(s)	7
EcoT14I	CCWWGG	1 cut(s)	590
ErhI	CCWWGG	1 cut(s)	590
FaeI	CATG	1 cut(s)	264
FatI	CATG	1 cut(s)	260
FblI	GTMKAC	2 cut(s)	90, 558
Fnu4HI	GCNGC	5 cut(s)	42, 52, 585, 619, 650
FokI	GGATG	3 cut(s)	142, 511, 652
Fsp4HI	GCNGC	5 cut(s)	42, 52, 585, 619, 650
FspBI	CTAG	1 cut(s)	236
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	5 cut(s)	42, 52, 585, 619, 650
GsaI	CCCAGC	1 cut(s)	434
HaeIII	GGCC	1 cut(s)	96
HapII	CCGG	1 cut(s)	646
HhaI	GCGC	1 cut(s)	56
Hin1II	CATG	1 cut(s)	264
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HincII	GTYRAC	2 cut(s)	91, 663
HindII	GTYRAC	2 cut(s)	91, 663
HinfI	GANTC	4 cut(s)	197, 305, 490, 566
HpaII	CCGG	1 cut(s)	646
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	6 cut(s)	76, 91, 447, 559, 633, 663
Hpy188I	TCNGA	1 cut(s)	743
Hpy188III	TCNNGA	1 cut(s)	424
Hpy8I	GTNNAC	6 cut(s)	76, 91, 447, 559, 633, 663
Hpy99I	CGWCG	2 cut(s)	92, 95
HpyAV	CCTTC	2 cut(s)	107, 125
HpyCH4III	ACNGT	2 cut(s)	64, 350
HpyCH4IV	ACGT	3 cut(s)	218, 384, 629
HpyCH4V	TGCA	5 cut(s)	41, 280, 302, 395, 584
HpyF3I	CTNAG	1 cut(s)	695
HpySE526I	ACGT	3 cut(s)	218, 384, 629
Hsp92II	CATG	1 cut(s)	264
HspAI	GCGC	1 cut(s)	54
Kzo9I	GATC	3 cut(s)	313, 673, 738
LmnI	GCTCC	3 cut(s)	383, 592, 731
LpnPI	CCDG	3 cut(s)	190, 416, 659
Lsp1109I	GCAGC	5 cut(s)	38, 53, 596, 630, 661
LweI	GCATC	1 cut(s)	417
MaeI	CTAG	1 cut(s)	236
MaeII	ACGT	3 cut(s)	218, 384, 629
MaeIII	GTNAC	3 cut(s)	64, 400, 725
MalI	GATC	3 cut(s)	315, 675, 740
MboI	GATC	3 cut(s)	313, 673, 738
MboII	GAAGA	1 cut(s)	382
MflI	RGATCY	2 cut(s)	313, 673
MhlI	GDGCHC	1 cut(s)	380
MluCI	AATT	2 cut(s)	7, 281
MlyI	GAGTC	2 cut(s)	206, 484
MmeI	TCCRAC	1 cut(s)	554
MseI	TTAA	2 cut(s)	26, 455
MspA1I	CMGCKG	1 cut(s)	652
MspCI	CTTAAG	1 cut(s)	25
MspI	CCGG	1 cut(s)	646
MvnI	CGCG	1 cut(s)	56
NdeII	GATC	3 cut(s)	313, 673, 738
NlaIII	CATG	1 cut(s)	264
NmuCI	GTSAC	2 cut(s)	64, 725
NspI	RCATGY	1 cut(s)	264
PciI	ACATGT	1 cut(s)	260
PfeI	GAWTC	2 cut(s)	305, 566
PkrI	GCNGC	5 cut(s)	43, 53, 586, 620, 651
PleI	GAGTC	2 cut(s)	205, 484
PmaCI	CACGTG	1 cut(s)	630
PmlI	CACGTG	1 cut(s)	630
PpsI	GAGTC	2 cut(s)	205, 484
Ppu21I	YACGTR	1 cut(s)	630
PpuMI	RGGWCCY	1 cut(s)	112
PscI	ACATGT	1 cut(s)	260
Psp5II	RGGWCCY	1 cut(s)	112
PspCI	CACGTG	1 cut(s)	630
PspFI	CCCAGC	1 cut(s)	430
PspPI	GGNCC	1 cut(s)	112
PspPPI	RGGWCCY	1 cut(s)	112
PstI	CTGCAG	2 cut(s)	304, 586
PsuI	RGATCY	2 cut(s)	313, 673
PvuII	CAGCTG	1 cut(s)	652
RsaI	GTAC	4 cut(s)	323, 446, 466, 634
RsaNI	GTAC	4 cut(s)	322, 445, 465, 633
SalI	GTCGAC	1 cut(s)	89
SaqAI	TTAA	2 cut(s)	26, 455
SatI	GCNGC	5 cut(s)	42, 52, 585, 619, 650
Sau3AI	GATC	3 cut(s)	313, 673, 738
Sau96I	GGNCC	1 cut(s)	112
SchI	GAGTC	2 cut(s)	206, 484
SduI	GDGCHC	1 cut(s)	380
SfaNI	GCATC	1 cut(s)	417
SfcI	CTRYAG	2 cut(s)	300, 582
SgrDI	CGTCGACG	1 cut(s)	89
SinI	GGWCC	1 cut(s)	112
SmlI	CTYRAG	1 cut(s)	25
SmoI	CTYRAG	1 cut(s)	25
SpeI	ACTAGT	1 cut(s)	235
Sse9I	AATT	2 cut(s)	7, 281
SspMI	CTAG	1 cut(s)	236
StyI	CCWWGG	1 cut(s)	590
TaaI	ACNGT	2 cut(s)	64, 350
TaiI	ACGT	3 cut(s)	221, 387, 632
TaqI	TCGA	2 cut(s)	90, 296
TasI	AATT	2 cut(s)	7, 281
TatI	WGTACW	2 cut(s)	321, 444
TfiI	GAWTC	2 cut(s)	305, 566
Tru1I	TTAA	2 cut(s)	26, 455
Tru9I	TTAA	2 cut(s)	26, 455
TseFI	GTSAC	2 cut(s)	64, 725
TseI	GCWGC	5 cut(s)	41, 51, 584, 618, 649
Tsp45I	GTSAC	2 cut(s)	64, 725
TspDTI	ATGAA	1 cut(s)	302
TspGWI	ACGGA	4 cut(s)	76, 114, 483, 744
Vha464I	CTTAAG	1 cut(s)	25
VpaK11BI	GGWCC	1 cut(s)	112
XapI	RAATTY	1 cut(s)	7
XceI	RCATGY	1 cut(s)	264
XmiI	GTMKAC	2 cut(s)	90, 558
XspI	CTAG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.