FvH4_2g12970

Dehydrogenase reductase SDR family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013243
Physical Location & Seq
Forward (+)
11376984 .. 11380733
3750 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g12970.t1

Sequence Viewer

Length: 975 bp
ATGTTCCTTCTCAAGGCGTGGAGGCAGACCGCTTTTGGAACATATGGGTACCTGAATTTCACCAAGTCTGGTTTCATAGAACATTCAAAGAAATTCAAGTCAGAAGAAATGGAAACACGGATAGACGGGAAAAATTGCATTGTAACAGGGGCTAATTCAGGCATTGGTTTTGCAACTGCTGAGGGACTCGCATCACGTGGGGCAACCGTCTATATGGTATGTCGAAACAAGGAGAGGGGTGAAGCTGCACAATCTAAAATTCAGTCTACAACTGGTAACCAAAATGTTCATTTGGAGGTCTGCGATCTTTCATCTGTTAGTGATGTCAAATCATTTGCATCCACCTTTTCCTCAAAGAATGTGCCGGTTCATGTATTGGTTAACAACGCAGGCATGCTTGAGCATGATAGAGTTACCACACCAGAAGGGTTGGAGTTTAACTTTGCCGTAAATGTGGTTGGCACCTATGCCATGACTGAACTGATGTTGCCATTGCTGGAGAAAGCTGCACCTGATGCTCGAGTTATTACTGTTGCCTCTGGTGGAATGTACACGGTTCCCTTGACCAAAGATTTACAGTTTACTGATGGAAACTTCAATGGAGTGGAGCAGTATGCTCGAAACAAGCGAGTTCAGGTGGCACTAACTGAAAAATGGGCTGAAATAAACAAAAACAAGGGGATTGGATTCTATTCTATGCACCCTGGTTGGGCTGAGACACCTGGGGTTGCCAAGAGTTTGCCAAGTTTCTCTAAAGCTCTTTCGGGAAAGCTTAGAACAAATGAGGAAGGTGCAGACACCATTATTTGGTTGGCTTTACAGCCAAAAGAGAAACTGGTATCTGGTGCATTTTATTTTGATAGAGCAGAAGCGCCTAAACACCTGATGTTTGCAGCTACCAGTGGCTCTCATGGATTAATTGACTCGGTTATTGACAGTCTCCAACGCATATCTAGTATCTCAGTACAGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

325

Amino Acids

35.33

Weight (kDa)

8.3

Isoelectric Point (pI)

32.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 44 - 244 1.3e-24 short chain dehydrogenase
KR PF08659 47 - 161 1.5e-08 KR domain
Epimerase PF01370 47 - 224 6e-08 NAD dependent epimerase/dehydratase family
adh_short_C2 PF13561 50 - 271 8.6e-19 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013243)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09750
fragaria_vesca FvH4_2g12970
malus_domestica MD10G1036200.v1.1
prunus_persica Prupe.8G041900_v2.0.a1 Prupe.8G041900_v2.0.a1 Prupe.8G041900_v2.0.a1
pyrus_communis pycom10g02460
rosa_chinensis RchiOBHm_Chr6g0274101
rosa_laevigata RLG00000013578
rosa_multiflora Rmu_ssc0000413.1_g000003
rosa_roxburghii Rroxscaffold_7G00194650
rosa_rugosa Rorug06G0078500 Rorug06G0078500
rosa_samantha Rh6AG194500 Rh6BG198600 Rh6CG198400
rosa_wichuraiana Rw0G007930 Rw6G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 48
AccB1I GGYRCC 2 cut(s) 48, 461
AccB7I CCANNNNNTGG 1 cut(s) 807
AccI GTMKAC 1 cut(s) 266
AciI CCGC 1 cut(s) 30
AcsI RAATTY 3 cut(s) 55, 92, 258
AcvI CACGTG 1 cut(s) 197
AfaI GTAC 3 cut(s) 50, 551, 966
AfiI CCNNNNNNNGG 3 cut(s) 13, 709, 807
AgsI TTSAA 3 cut(s) 87, 97, 598
AjnI CCWGG 2 cut(s) 703, 721
AjuI GAANNNNNNNTTGG 2 cut(s) 56, 88
AluBI AGCT 5 cut(s) 245, 506, 758, 772, 896
AluI AGCT 5 cut(s) 245, 506, 758, 772, 896
Alw26I GTCTC 2 cut(s) 710, 944
Ama87I CYCGRG 1 cut(s) 519
ApeKI GCWGC 3 cut(s) 245, 506, 893
ApoI RAATTY 3 cut(s) 55, 92, 258
AseI ATTAAT 1 cut(s) 917
Asp718I GGTACC 1 cut(s) 48
AspLEI GCGC 1 cut(s) 874
AsuHPI GGTGA 2 cut(s) 52, 251
AvaI CYCGRG 1 cut(s) 519
BanI GGYRCC 2 cut(s) 48, 461
BbrPI CACGTG 1 cut(s) 197
BbvCI CCTCAGC 1 cut(s) 180
BbvI GCAGC 3 cut(s) 232, 493, 905
BccI CCATC 1 cut(s) 581
BceAI ACGGC 1 cut(s) 431
BcgI CGANNNNNNTGC 2 cut(s) 599, 633
BciT130I CCWGG 2 cut(s) 705, 723
BcoDI GTCTC 2 cut(s) 710, 944
BfaI CTAG 1 cut(s) 954
BfoI RGCGCY 1 cut(s) 875
BisI GCNGC 3 cut(s) 246, 507, 894
BlsI GCNGC 3 cut(s) 247, 508, 895
Bme1390I CCNGG 2 cut(s) 705, 723
BmeT110I CYCGRG 1 cut(s) 519
BmiI GGNNCC 3 cut(s) 50, 463, 558
BmrFI CCNGG 2 cut(s) 705, 723
BmsI GCATC 3 cut(s) 200, 347, 505
BpmI CTGGAG 1 cut(s) 518
Bpu10I CCTNAGC 1 cut(s) 180
BpuEI CTTGAG 1 cut(s) 419
BsaAI YACGTR 1 cut(s) 197
BsaJI CCNNGG 2 cut(s) 703, 722
Bsc4I CCNNNNNNNGG 3 cut(s) 13, 709, 807
Bse118I RCCGGY 1 cut(s) 364
Bse1I ACTGG 3 cut(s) 277, 840, 900
Bse3DI GCAATG 1 cut(s) 491
BseBI CCWGG 2 cut(s) 705, 723
BseDI CCNNGG 2 cut(s) 703, 722
BseGI GGATG 1 cut(s) 338
BseLI CCNNNNNNNGG 3 cut(s) 13, 709, 807
BseMI GCAATG 1 cut(s) 491
BseMII CTCAG 3 cut(s) 171, 705, 975
BseNI ACTGG 3 cut(s) 277, 840, 900
BseXI GCAGC 3 cut(s) 232, 493, 905
BsgI GTGCAG 3 cut(s) 231, 492, 813
BshNI GGYRCC 2 cut(s) 48, 461
BsiHKCI CYCGRG 1 cut(s) 519
BsiSI CCGG 1 cut(s) 365
BslFI GGGAC 1 cut(s) 198
BslI CCNNNNNNNGG 3 cut(s) 13, 709, 807
BsmAI GTCTC 2 cut(s) 710, 944
BsmFI GGGAC 1 cut(s) 198
BsoBI CYCGRG 1 cut(s) 519
Bsp1407I TGTACA 1 cut(s) 549
Bsp143I GATC 1 cut(s) 304
BspACI CCGC 1 cut(s) 30
BspCNI CTCAG 3 cut(s) 172, 706, 974
BspLI GGNNCC 3 cut(s) 50, 463, 558
BspT107I GGYRCC 2 cut(s) 48, 461
BsrDI GCAATG 1 cut(s) 491
BsrFI RCCGGY 1 cut(s) 364
BsrGI TGTACA 1 cut(s) 549
BsrI ACTGG 3 cut(s) 277, 840, 900
BssAI RCCGGY 1 cut(s) 364
BssECI CCNNGG 2 cut(s) 703, 722
BssMI GATC 1 cut(s) 304
Bst2UI CCWGG 2 cut(s) 705, 723
Bst4CI ACNGT 5 cut(s) 208, 532, 556, 579, 938
BstAPI GCANNNNNTGC 1 cut(s) 515
BstAUI TGTACA 1 cut(s) 549
BstBAI YACGTR 1 cut(s) 197
BstC8I GCNNGC 2 cut(s) 391, 395
BstDEI CTNAG 4 cut(s) 180, 714, 773, 961
BstEII GGTNACC 1 cut(s) 275
BstENI CCTNNNNNAGG 1 cut(s) 11
BstF5I GGATG 1 cut(s) 338
BstH2I RGCGCY 1 cut(s) 875
BstHHI GCGC 1 cut(s) 874
BstKTI GATC 1 cut(s) 307
BstMAI GTCTC 2 cut(s) 710, 944
BstMBI GATC 1 cut(s) 304
BstMWI GCNNNNNNNGC 1 cut(s) 515
BstNI CCWGG 2 cut(s) 705, 723
BstNSI RCATGY 1 cut(s) 397
BstPI GGTNACC 1 cut(s) 275
BstSCI CCNGG 2 cut(s) 703, 721
BstV1I GCAGC 3 cut(s) 232, 493, 905
BtsCI GGATG 1 cut(s) 338
BtsIMutI CAGTG 1 cut(s) 907
Cac8I GCNNGC 2 cut(s) 391, 395
CfoI GCGC 1 cut(s) 874
Cfr10I RCCGGY 1 cut(s) 364
Csp6I GTAC 3 cut(s) 49, 550, 965
CviAII CATG 5 cut(s) 371, 394, 404, 472, 911
CviQI GTAC 3 cut(s) 49, 550, 965
DdeI CTNAG 4 cut(s) 180, 714, 773, 961
DpnI GATC 1 cut(s) 306
DpnII GATC 1 cut(s) 304
Eco72I CACGTG 1 cut(s) 197
Eco88I CYCGRG 1 cut(s) 519
Eco91I GGTNACC 1 cut(s) 275
EcoNI CCTNNNNNAGG 1 cut(s) 11
EcoO65I GGTNACC 1 cut(s) 275
EcoRII CCWGG 2 cut(s) 703, 721
FaeI CATG 5 cut(s) 374, 397, 407, 475, 914
FaqI GGGAC 1 cut(s) 198
FatI CATG 5 cut(s) 370, 393, 403, 471, 910
FauNDI CATATG 1 cut(s) 43
FblI GTMKAC 1 cut(s) 266
Fnu4HI GCNGC 3 cut(s) 246, 507, 894
FokI GGATG 1 cut(s) 325
Fsp4HI GCNGC 3 cut(s) 246, 507, 894
FspBI CTAG 1 cut(s) 954
GlaI GCGC 1 cut(s) 873
GluI GCNGC 3 cut(s) 246, 507, 894
GsuI CTGGAG 1 cut(s) 518
HaeII RGCGCY 1 cut(s) 875
HapII CCGG 1 cut(s) 365
HhaI GCGC 1 cut(s) 874
Hin1II CATG 5 cut(s) 374, 397, 407, 475, 914
Hin6I GCGC 1 cut(s) 872
HinP1I GCGC 1 cut(s) 872
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HindIII AAGCTT 1 cut(s) 770
HinfI GANTC 3 cut(s) 186, 687, 923
HpaI GTTAAC 1 cut(s) 382
HpaII CCGG 1 cut(s) 365
HphI GGTGA 2 cut(s) 52, 251
Hpy166II GTNNAC 4 cut(s) 267, 382, 552, 582
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 1 cut(s) 765
Hpy8I GTNNAC 4 cut(s) 267, 382, 552, 582
HpyAV CCTTC 3 cut(s) 17, 419, 782
HpyCH4III ACNGT 5 cut(s) 208, 532, 556, 579, 938
HpyCH4IV ACGT 1 cut(s) 196
HpyCH4V TGCA 9 cut(s) 138, 173, 248, 338, 509, 700, 794, 848, 893
HpyF10VI GCNNNNNNNGC 1 cut(s) 515
HpyF3I CTNAG 4 cut(s) 180, 714, 773, 961
HpySE526I ACGT 1 cut(s) 196
Hsp92II CATG 5 cut(s) 374, 397, 407, 475, 914
HspAI GCGC 1 cut(s) 872
KpnI GGTACC 1 cut(s) 52
KspAI GTTAAC 1 cut(s) 382
Kzo9I GATC 1 cut(s) 304
LmnI GCTCC 1 cut(s) 607
Lsp1109I GCAGC 3 cut(s) 232, 493, 905
LweI GCATC 3 cut(s) 200, 347, 505
MaeI CTAG 1 cut(s) 954
MaeII ACGT 1 cut(s) 196
MaeIII GTNAC 3 cut(s) 142, 275, 412
MalI GATC 1 cut(s) 306
MboI GATC 1 cut(s) 304
MboII GAAGA 1 cut(s) 116
MluCI AATT 7 cut(s) 55, 92, 133, 154, 258, 918, 970
MlyI GAGTC 2 cut(s) 180, 917
MmeI TCCRAC 2 cut(s) 411, 967
MnlI CCTC 7 cut(s) 15, 175, 228, 289, 361, 547, 778
MseI TTAA 3 cut(s) 381, 438, 917
MspI CCGG 1 cut(s) 365
MspR9I CCNGG 2 cut(s) 705, 723
MvaI CCWGG 2 cut(s) 705, 723
MwoI GCNNNNNNNGC 1 cut(s) 515
NdeI CATATG 1 cut(s) 43
NdeII GATC 1 cut(s) 304
NlaIII CATG 5 cut(s) 374, 397, 407, 475, 914
NlaIV GGNNCC 3 cut(s) 50, 463, 558
NspI RCATGY 1 cut(s) 397
PaeI GCATGC 1 cut(s) 397
PaeR7I CTCGAG 1 cut(s) 519
PcsI WCGNNNNNNNCGW 1 cut(s) 625
PfeI GAWTC 1 cut(s) 687
PflMI CCANNNNNTGG 1 cut(s) 807
PkrI GCNGC 3 cut(s) 247, 508, 895
PleI GAGTC 2 cut(s) 180, 917
PmaCI CACGTG 1 cut(s) 197
PmlI CACGTG 1 cut(s) 197
PpsI GAGTC 2 cut(s) 180, 917
Ppu21I YACGTR 1 cut(s) 197
PshBI ATTAAT 1 cut(s) 917
Psp6I CCWGG 2 cut(s) 703, 721
PspCI CACGTG 1 cut(s) 197
PspEI GGTNACC 1 cut(s) 275
PspGI CCWGG 2 cut(s) 703, 721
PspN4I GGNNCC 3 cut(s) 50, 463, 558
PspXI VCTCGAGB 1 cut(s) 519
RsaI GTAC 3 cut(s) 50, 551, 966
RsaNI GTAC 3 cut(s) 49, 550, 965
SaqAI TTAA 3 cut(s) 381, 438, 917
SatI GCNGC 3 cut(s) 246, 507, 894
Sau3AI GATC 1 cut(s) 304
SchI GAGTC 2 cut(s) 180, 917
ScrFI CCNGG 2 cut(s) 705, 723
SfaNI GCATC 3 cut(s) 200, 347, 505
Sfr274I CTCGAG 1 cut(s) 519
SlaI CTCGAG 1 cut(s) 519
SmlI CTYRAG 3 cut(s) 11, 398, 519
SmoI CTYRAG 3 cut(s) 11, 398, 519
SphI GCATGC 1 cut(s) 397
Sse9I AATT 7 cut(s) 55, 92, 133, 154, 258, 918, 970
SsiI CCGC 1 cut(s) 30
SspMI CTAG 1 cut(s) 954
StyD4I CCNGG 2 cut(s) 703, 721
TaaI ACNGT 5 cut(s) 208, 532, 556, 579, 938
TaiI ACGT 1 cut(s) 199
TaqI TCGA 3 cut(s) 223, 520, 619
TasI AATT 7 cut(s) 55, 92, 133, 154, 258, 918, 970
TatI WGTACW 2 cut(s) 549, 964
TfiI GAWTC 1 cut(s) 687
Tru1I TTAA 3 cut(s) 381, 438, 917
Tru9I TTAA 3 cut(s) 381, 438, 917
TscAI CASTG 1 cut(s) 907
TseI GCWGC 3 cut(s) 245, 506, 893
TspDTI ATGAA 4 cut(s) 64, 278, 300, 359
TspGWI ACGGA 1 cut(s) 133
TspRI CASTG 1 cut(s) 907
Van91I CCANNNNNTGG 1 cut(s) 807
VspI ATTAAT 1 cut(s) 917
XagI CCTNNNNNAGG 1 cut(s) 11
XapI RAATTY 3 cut(s) 55, 92, 258
XceI RCATGY 1 cut(s) 397
XcmI CCANNNNNNNNNTGG 1 cut(s) 808
XhoI CTCGAG 1 cut(s) 519
XmiI GTMKAC 1 cut(s) 266
XspI CTAG 1 cut(s) 954
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.