Rh6AG194500

Dehydrogenase reductase SDR family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0013243
Physical Location & Seq
Forward (+)
34922241 .. 34925465
3225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG194500.1

Sequence Viewer

Length: 1017 bp
ATGAGAGATCTTCCACTCAAAAAGGCTAAAGCCCCGAGCGATACTTGTTCGACTCTCAGACTTGAACTTCACATATCCCCTAGAGCGCTTGCAATGTTTCTTCTCAAGGCATGGAGACAAACGGCTTTTGGTACATATGGGTACCTGAATTTCACCAAGTCTGGTTTCATAGAACATTCAAAGAATTTCAAGTCGGAGGACATGGAAATACGGAGAGATGGGAAAAACTGCATTGTAACAGGAGCTAATTCAGGCCTTGGTTTTGCGACTGCTGAGGGACTTGCATCACGTGGGGCAACTGTGTATATGGTCTGTCGAAACAAGGAGAGAGGTGAAGCAGCACAATCTAAAATTCAATCTAAAACTGGTAACCAAAATGTTCATTTGGAGGTCTGCGATCTTTCATCTGTTAGTGATGTCAAATCATTTGCATCCACGTTTTCCTTAAAGAATGTGCCAGTTCATGTATTGGTTAACAATGCAGGCATGCTTGAGCATGATAGAGTTACCACATCAGAAGGGTTGGAGTTGAACTTTGCCACAAATGTGTTGGGCACCTATGCCATGACTGAACTGATGTTGCCATTGCTGGAGAAAGCAGCACCTGATGCTCGAGTTATTACTGTTTCCTCTGGTGGAATGTACACAGTTCCCTTGACCAAAGATTTACAGTTCACTGATGGCAACTTCAATGGGGTGGAGCAGTATGCTCGAAACAAGCGAGTTCAGGTGGCACTAACTGAGAAATGGGCTGAAATAAACAAAAACAAGGGGATTGGATTCTATTCTATGCACCCTGGTTGGGCTGAGACGCCTGGGGTTGCCAACAGTTTGCCGAGTTTCTCTAAAGCTCTTTCGGGAAAACTTAGAACAAACGATGAAGGTGCAGACACCATTGTTTGGCTGGCTTTGCAGCCAAAAGAGAAATTGGTATCAGTCTACGACGCTTATCTGGTATCTCTGCACAAGATTAGGAAACCTGTATGTGCTATAATTGGATTGAGGCTATTGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

338

Amino Acids

37.1

Weight (kDa)

9.22

Isoelectric Point (pI)

33.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 75 - 275 1e-23 short chain dehydrogenase
Epimerase PF01370 78 - 316 2.4e-09 NAD dependent epimerase/dehydratase family
KR PF08659 78 - 212 1.3e-08 KR domain
adh_short_C2 PF13561 81 - 284 4.3e-17 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013243)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09750
fragaria_vesca FvH4_2g12970
malus_domestica MD10G1036200.v1.1
prunus_persica Prupe.8G041900_v2.0.a1 Prupe.8G041900_v2.0.a1 Prupe.8G041900_v2.0.a1
pyrus_communis pycom10g02460
rosa_chinensis RchiOBHm_Chr6g0274101
rosa_laevigata RLG00000013578
rosa_multiflora Rmu_ssc0000413.1_g000003
rosa_roxburghii Rroxscaffold_7G00194650
rosa_rugosa Rorug06G0078500 Rorug06G0078500
rosa_samantha Rh6AG194500 Rh6BG198600 Rh6CG198400
rosa_wichuraiana Rw0G007930 Rw6G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 141
AccB1I GGYRCC 2 cut(s) 141, 554
AccB7I CCANNNNNTGG 1 cut(s) 900
AccI GTMKAC 1 cut(s) 939
AcsI RAATTY 3 cut(s) 148, 184, 351
AcvI CACGTG 1 cut(s) 290
AcyI GRCGYC 1 cut(s) 812
AfaI GTAC 3 cut(s) 133, 143, 644
AfeI AGCGCT 1 cut(s) 87
AfiI CCNNNNNNNGG 2 cut(s) 802, 900
AgsI TTSAA 6 cut(s) 65, 180, 190, 356, 532, 691
AjnI CCWGG 2 cut(s) 796, 814
AjuI GAANNNNNNNTTGG 2 cut(s) 149, 181
AleI CACNNNNGTG 1 cut(s) 545
AluBI AGCT 2 cut(s) 245, 851
AluI AGCT 2 cut(s) 245, 851
Alw26I GTCTC 2 cut(s) 109, 803
AlwNI CAGNNNCTG 1 cut(s) 605
Ama87I CYCGRG 2 cut(s) 34, 612
Aor51HI AGCGCT 1 cut(s) 87
AoxI GGCC 1 cut(s) 253
ApeKI GCWGC 3 cut(s) 338, 599, 913
ApoI RAATTY 3 cut(s) 148, 184, 351
Asp718I GGTACC 1 cut(s) 141
AspLEI GCGC 1 cut(s) 88
AsuHPI GGTGA 2 cut(s) 145, 344
AvaI CYCGRG 2 cut(s) 34, 612
BaeGI GKGCMC 1 cut(s) 557
BanI GGYRCC 2 cut(s) 141, 554
BbrPI CACGTG 1 cut(s) 290
BbvCI CCTCAGC 1 cut(s) 273
BbvI GCAGC 3 cut(s) 350, 611, 925
BccI CCATC 2 cut(s) 212, 674
BceAI ACGGC 1 cut(s) 138
BcgI CGANNNNNNTGC 4 cut(s) 692, 726, 866, 900
BciT130I CCWGG 2 cut(s) 798, 816
BcoDI GTCTC 2 cut(s) 109, 803
BfaI CTAG 1 cut(s) 81
BfoI RGCGCY 1 cut(s) 89
BglII AGATCT 1 cut(s) 7
BisI GCNGC 3 cut(s) 339, 600, 914
BlsI GCNGC 3 cut(s) 340, 601, 915
Bme1390I CCNGG 2 cut(s) 798, 816
BmeT110I CYCGRG 2 cut(s) 34, 612
BmiI GGNNCC 2 cut(s) 143, 556
BmrFI CCNGG 2 cut(s) 798, 816
BmsI GCATC 3 cut(s) 293, 440, 598
BpmI CTGGAG 1 cut(s) 611
Bpu10I CCTNAGC 1 cut(s) 273
BpuEI CTTGAG 2 cut(s) 89, 512
BsaAI YACGTR 1 cut(s) 290
BsaHI GRCGYC 1 cut(s) 812
BsaJI CCNNGG 3 cut(s) 256, 796, 815
Bsc4I CCNNNNNNNGG 2 cut(s) 802, 900
Bse1I ACTGG 2 cut(s) 370, 458
Bse3DI GCAATG 2 cut(s) 99, 584
BseBI CCWGG 2 cut(s) 798, 816
BseDI CCNNGG 3 cut(s) 256, 796, 815
BseGI GGATG 1 cut(s) 431
BseLI CCNNNNNNNGG 2 cut(s) 802, 900
BseMI GCAATG 2 cut(s) 99, 584
BseMII CTCAG 4 cut(s) 70, 264, 732, 798
BseNI ACTGG 2 cut(s) 370, 458
BseSI GKGCMC 1 cut(s) 557
BseXI GCAGC 3 cut(s) 350, 611, 925
BsgI GTGCAG 2 cut(s) 906, 947
BshFI GGCC 1 cut(s) 255
BshNI GGYRCC 2 cut(s) 141, 554
BsiHKCI CYCGRG 2 cut(s) 34, 612
BslFI GGGAC 1 cut(s) 291
BslI CCNNNNNNNGG 2 cut(s) 802, 900
BsmAI GTCTC 2 cut(s) 109, 803
BsmBI CGTCTC 1 cut(s) 803
BsmFI GGGAC 1 cut(s) 291
BsnI GGCC 1 cut(s) 255
BsoBI CYCGRG 2 cut(s) 34, 612
Bsp1286I GDGCHC 1 cut(s) 557
Bsp1407I TGTACA 1 cut(s) 642
Bsp143I GATC 2 cut(s) 7, 397
BspANI GGCC 1 cut(s) 255
BspCNI CTCAG 4 cut(s) 69, 265, 733, 799
BspLI GGNNCC 2 cut(s) 143, 556
BspT107I GGYRCC 2 cut(s) 141, 554
BsrDI GCAATG 2 cut(s) 99, 584
BsrGI TGTACA 1 cut(s) 642
BsrI ACTGG 2 cut(s) 370, 458
BssECI CCNNGG 3 cut(s) 256, 796, 815
BssMI GATC 2 cut(s) 7, 397
BssNI GRCGYC 1 cut(s) 812
BssT1I CCWWGG 1 cut(s) 256
Bst2UI CCWGG 2 cut(s) 798, 816
Bst4CI ACNGT 5 cut(s) 301, 625, 649, 672, 830
BstACI GRCGYC 1 cut(s) 812
BstAPI GCANNNNNTGC 1 cut(s) 608
BstAUI TGTACA 1 cut(s) 642
BstBAI YACGTR 1 cut(s) 290
BstC8I GCNNGC 4 cut(s) 90, 484, 488, 906
BstDEI CTNAG 5 cut(s) 56, 273, 741, 807, 866
BstEII GGTNACC 1 cut(s) 368
BstF5I GGATG 1 cut(s) 431
BstH2I RGCGCY 1 cut(s) 89
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 2 cut(s) 10, 400
BstMAI GTCTC 2 cut(s) 109, 803
BstMBI GATC 2 cut(s) 7, 397
BstMWI GCNNNNNNNGC 2 cut(s) 608, 910
BstNI CCWGG 2 cut(s) 798, 816
BstNSI RCATGY 1 cut(s) 490
BstPI GGTNACC 1 cut(s) 368
BstSCI CCNGG 2 cut(s) 796, 814
BstSLI GKGCMC 1 cut(s) 557
BstV1I GCAGC 3 cut(s) 350, 611, 925
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BsuRI GGCC 1 cut(s) 255
BtsCI GGATG 1 cut(s) 431
BtsIMutI CAGTG 1 cut(s) 675
Cac8I GCNNGC 4 cut(s) 90, 484, 488, 906
CaiI CAGNNNCTG 1 cut(s) 605
CfoI GCGC 1 cut(s) 88
CseI GACGC 2 cut(s) 820, 953
Csp6I GTAC 3 cut(s) 132, 142, 643
CviAII CATG 6 cut(s) 111, 202, 464, 487, 497, 565
CviQI GTAC 3 cut(s) 132, 142, 643
DdeI CTNAG 5 cut(s) 56, 273, 741, 807, 866
DpnI GATC 2 cut(s) 9, 399
DpnII GATC 2 cut(s) 7, 397
Eco130I CCWWGG 1 cut(s) 256
Eco147I AGGCCT 1 cut(s) 255
Eco47III AGCGCT 1 cut(s) 87
Eco72I CACGTG 1 cut(s) 290
Eco88I CYCGRG 2 cut(s) 34, 612
Eco91I GGTNACC 1 cut(s) 368
EcoO65I GGTNACC 1 cut(s) 368
EcoRII CCWGG 2 cut(s) 796, 814
EcoT14I CCWWGG 1 cut(s) 256
ErhI CCWWGG 1 cut(s) 256
Esp3I CGTCTC 1 cut(s) 803
FaeI CATG 6 cut(s) 114, 205, 467, 490, 500, 568
FaqI GGGAC 1 cut(s) 291
FatI CATG 6 cut(s) 110, 201, 463, 486, 496, 564
FauNDI CATATG 1 cut(s) 136
FblI GTMKAC 1 cut(s) 939
Fnu4HI GCNGC 3 cut(s) 339, 600, 914
FokI GGATG 1 cut(s) 418
Fsp4HI GCNGC 3 cut(s) 339, 600, 914
FspBI CTAG 1 cut(s) 81
GlaI GCGC 1 cut(s) 87
GluI GCNGC 3 cut(s) 339, 600, 914
GsuI CTGGAG 1 cut(s) 611
HaeII RGCGCY 1 cut(s) 89
HaeIII GGCC 1 cut(s) 255
HgaI GACGC 2 cut(s) 820, 953
HhaI GCGC 1 cut(s) 88
Hin1I GRCGYC 1 cut(s) 812
Hin1II CATG 6 cut(s) 114, 205, 467, 490, 500, 568
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HincII GTYRAC 1 cut(s) 475
HindII GTYRAC 1 cut(s) 475
HinfI GANTC 2 cut(s) 52, 780
HpaI GTTAAC 1 cut(s) 475
HphI GGTGA 2 cut(s) 145, 344
Hpy166II GTNNAC 4 cut(s) 475, 645, 675, 940
Hpy188I TCNGA 3 cut(s) 59, 196, 517
Hpy188III TCNNGA 1 cut(s) 858
Hpy8I GTNNAC 4 cut(s) 475, 645, 675, 940
Hpy99I CGWCG 1 cut(s) 947
HpyAV CCTTC 2 cut(s) 512, 875
HpyCH4III ACNGT 5 cut(s) 301, 625, 649, 672, 830
HpyCH4IV ACGT 2 cut(s) 289, 437
HpyCH4V TGCA 9 cut(s) 92, 231, 284, 431, 482, 793, 887, 913, 964
HpyF10VI GCNNNNNNNGC 2 cut(s) 608, 910
HpyF3I CTNAG 5 cut(s) 56, 273, 741, 807, 866
HpySE526I ACGT 2 cut(s) 289, 437
Hsp92I GRCGYC 1 cut(s) 812
Hsp92II CATG 6 cut(s) 114, 205, 467, 490, 500, 568
HspAI GCGC 1 cut(s) 86
KpnI GGTACC 1 cut(s) 145
KspAI GTTAAC 1 cut(s) 475
Kzo9I GATC 2 cut(s) 7, 397
LmnI GCTCC 2 cut(s) 242, 700
Lsp1109I GCAGC 3 cut(s) 350, 611, 925
LweI GCATC 3 cut(s) 293, 440, 598
MaeI CTAG 1 cut(s) 81
MaeII ACGT 2 cut(s) 289, 437
MaeIII GTNAC 3 cut(s) 235, 368, 505
MalI GATC 2 cut(s) 9, 399
MboI GATC 2 cut(s) 7, 397
MboII GAAGA 1 cut(s) 92
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 557
MluCI AATT 6 cut(s) 148, 184, 247, 351, 926, 993
MlyI GAGTC 1 cut(s) 46
MmeI TCCRAC 2 cut(s) 174, 504
MnlI CCTC 6 cut(s) 190, 268, 323, 382, 640, 996
MseI TTAA 2 cut(s) 446, 474
MslI CAYNNNNRTG 1 cut(s) 545
MspR9I CCNGG 2 cut(s) 798, 816
MvaI CCWGG 2 cut(s) 798, 816
MwoI GCNNNNNNNGC 2 cut(s) 608, 910
NdeI CATATG 1 cut(s) 136
NdeII GATC 2 cut(s) 7, 397
NlaIII CATG 6 cut(s) 114, 205, 467, 490, 500, 568
NlaIV GGNNCC 2 cut(s) 143, 556
NmeAIII GCCGAG 1 cut(s) 861
NspI RCATGY 1 cut(s) 490
OliI CACNNNNGTG 1 cut(s) 545
PaeI GCATGC 1 cut(s) 490
PaeR7I CTCGAG 1 cut(s) 612
PceI AGGCCT 1 cut(s) 255
PcsI WCGNNNNNNNCGW 1 cut(s) 718
PfeI GAWTC 1 cut(s) 780
PflMI CCANNNNNTGG 1 cut(s) 900
PkrI GCNGC 3 cut(s) 340, 601, 915
PleI GAGTC 1 cut(s) 46
PmaCI CACGTG 1 cut(s) 290
PmlI CACGTG 1 cut(s) 290
PpsI GAGTC 1 cut(s) 46
Ppu21I YACGTR 1 cut(s) 290
Psp6I CCWGG 2 cut(s) 796, 814
PspCI CACGTG 1 cut(s) 290
PspEI GGTNACC 1 cut(s) 368
PspGI CCWGG 2 cut(s) 796, 814
PspN4I GGNNCC 2 cut(s) 143, 556
PspXI VCTCGAGB 1 cut(s) 612
PstNI CAGNNNCTG 1 cut(s) 605
PsuI RGATCY 1 cut(s) 7
RsaI GTAC 3 cut(s) 133, 143, 644
RsaNI GTAC 3 cut(s) 132, 142, 643
RseI CAYNNNNRTG 1 cut(s) 545
SaqAI TTAA 2 cut(s) 446, 474
SatI GCNGC 3 cut(s) 339, 600, 914
Sau3AI GATC 2 cut(s) 7, 397
SchI GAGTC 1 cut(s) 46
ScrFI CCNGG 2 cut(s) 798, 816
SduI GDGCHC 1 cut(s) 557
SfaNI GCATC 3 cut(s) 293, 440, 598
Sfr274I CTCGAG 1 cut(s) 612
SlaI CTCGAG 1 cut(s) 612
SmiMI CAYNNNNRTG 1 cut(s) 545
SmlI CTYRAG 3 cut(s) 104, 491, 612
SmoI CTYRAG 3 cut(s) 104, 491, 612
SphI GCATGC 1 cut(s) 490
Sse9I AATT 6 cut(s) 148, 184, 247, 351, 926, 993
SseBI AGGCCT 1 cut(s) 255
SspMI CTAG 1 cut(s) 81
StuI AGGCCT 1 cut(s) 255
StyD4I CCNGG 2 cut(s) 796, 814
StyI CCWWGG 1 cut(s) 256
TaaI ACNGT 5 cut(s) 301, 625, 649, 672, 830
TaiI ACGT 2 cut(s) 292, 440
TaqI TCGA 4 cut(s) 50, 316, 613, 712
TasI AATT 6 cut(s) 148, 184, 247, 351, 926, 993
TatI WGTACW 1 cut(s) 642
TfiI GAWTC 1 cut(s) 780
Tru1I TTAA 2 cut(s) 446, 474
Tru9I TTAA 2 cut(s) 446, 474
TscAI CASTG 1 cut(s) 682
TseI GCWGC 3 cut(s) 338, 599, 913
TspDTI ATGAA 5 cut(s) 157, 371, 393, 452, 894
TspGWI ACGGA 1 cut(s) 226
TspRI CASTG 1 cut(s) 682
Van91I CCANNNNNTGG 1 cut(s) 900
XapI RAATTY 3 cut(s) 148, 184, 351
XceI RCATGY 1 cut(s) 490
XcmI CCANNNNNNNNNTGG 2 cut(s) 547, 901
XhoI CTCGAG 1 cut(s) 612
XmiI GTMKAC 1 cut(s) 939
XspI CTAG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.