Prupe.8G041900_v2.0.a1

Dehydrogenase reductase SDR family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0013243
Physical Location & Seq
Reverse (-)
4338572 .. 4342907
4336 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G041900.1

Sequence Viewer

Length: 1074 bp
ATGCGCAACCCAATGGAAGAGTTTCCGCCCCAAAAGACACAAAAACTGCAGGAGACTTCAGTGTCTGTCAGACTTGAACTTCACTTATCCGTTGGAGCTCTTACAATGTTTCTTCTCAAGGCATGGAGACAAACAGCTTTTGGGATTTATGGGTATCTGAATTTCACCAAGTCTGGTTTCATAGAACATTCAAAGCAATTCAAGCCAGAGGATACGCAAACTCGGATAGAAGGGAAAAATTGCATTGTAACAGGAGCCAATTCTGGCATTGGTTTTGCGACTGCCGAGGGACTTGCATCACGTGGGGCAAATGTATATATGGTATGTCGAAATAAGGAGAGGGGTGAAGCTGCACAATCTAAAATTCAGTCTAACACAGGAAACCAAAATGTTCATTTGGAGGTCTGTGATCTCTCATCTGTTTCTGATATCAAGTCATTTGCGTCGCAGTTTTCCTCAAAGGATGTTCCAGTGCACATATTGGTGAATAATGCTGGTCTGCTTGAGCATAATAGGATTACCACCTCAGAAGGGTTTGAGTTGAACTTTGCTGTTAATGTATTGGGTACGTATGCAATGACGGAATTGATGTTGCCATTGCTGGAGAAAGCTGCACCTGATGCACGGGTTATTACTGTTTCTTCTGGTGGAATGTACACCACACCCTTGACCAAGGATTTACAGTTCAGTGAAGAAAACTTTAATGGGGTGCAGCAGTATTCTCGGAACAAGAGAGTTCAGGTGGCATTAACTGAGAAATGGGCTGAAATAAACAAAAACAAGGGGATTGGATTCTATTCAATGCACCCAGGTTGGGCTGAGACACCAGGGGTTGCCACGAGTTTGCCAAGTTTCTCTAAAGCTCTTTCGGGAAAGCTTAGAACAAACGAGGAAGGTGCAGACACCATAATTTGGTTGGCTTTACAGCCAAAAGAAAAGGTGGTATCAGGATCGTTTTATTTCGATAGAGCAGAAGCACCTAAACACCTGATGTTTGCGGCCACCAGTGGCTCTCATGCCTTAATCGACTCCATTTTTGAGAGTCTCAAGAGTTTGTCTAGTATCTCCGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

358

Amino Acids

39.19

Weight (kDa)

7.73

Isoelectric Point (pI)

37.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013243)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09750
fragaria_vesca FvH4_2g12970
malus_domestica MD10G1036200.v1.1
prunus_persica Prupe.8G041900_v2.0.a1 Prupe.8G041900_v2.0.a1 Prupe.8G041900_v2.0.a1
pyrus_communis pycom10g02460
rosa_chinensis RchiOBHm_Chr6g0274101
rosa_laevigata RLG00000013578
rosa_multiflora Rmu_ssc0000413.1_g000003
rosa_roxburghii Rroxscaffold_7G00194650
rosa_rugosa Rorug06G0078500 Rorug06G0078500
rosa_samantha Rh6AG194500 Rh6BG198600 Rh6CG198400
rosa_wichuraiana Rw0G007930 Rw6G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 61
Acc16I TGCGCA 1 cut(s) 5
AccB7I CCANNNNNTGG 1 cut(s) 912
AciI CCGC 3 cut(s) 26, 998, 1068
AclWI GGATC 1 cut(s) 958
AcoI YGGCCR 1 cut(s) 999
AcsI RAATTY 2 cut(s) 160, 363
AcuI CTGAAG 1 cut(s) 42
AcvI CACGTG 1 cut(s) 302
AfaI GTAC 2 cut(s) 568, 656
AfiI CCNNNNNNNGG 3 cut(s) 531, 814, 912
AgsI TTSAA 5 cut(s) 77, 192, 202, 544, 801
AjnI CCWGG 2 cut(s) 808, 826
AjuI GAANNNNNNNTTGG 2 cut(s) 161, 193
AloI GAACNNNNNNTCC 2 cut(s) 668, 700
AluBI AGCT 6 cut(s) 98, 137, 350, 611, 863, 877
AluI AGCT 6 cut(s) 98, 137, 350, 611, 863, 877
Alw21I GWGCWC 2 cut(s) 100, 477
Alw26I GTCTC 4 cut(s) 47, 121, 815, 1049
Alw44I GTGCAC 1 cut(s) 473
AlwI GGATC 1 cut(s) 958
AlwNI CAGNNNCTG 1 cut(s) 65
AoxI GGCC 1 cut(s) 999
ApaLI GTGCAC 1 cut(s) 473
ApeKI GCWGC 3 cut(s) 350, 611, 712
ApoI RAATTY 2 cut(s) 160, 363
ArsI GACNNNNNNTTYG 2 cut(s) 1019, 1051
Asp700I GAANNNNTTC 1 cut(s) 21
AspLEI GCGC 1 cut(s) 6
AsuHPI GGTGA 3 cut(s) 157, 356, 496
BaeGI GKGCMC 1 cut(s) 477
BanII GRGCYC 1 cut(s) 100
BauI CACGAG 1 cut(s) 838
BbrPI CACGTG 1 cut(s) 302
Bbv12I GWGCWC 2 cut(s) 100, 477
BbvI GCAGC 3 cut(s) 337, 598, 724
BcgI CGANNNNNNTGC 6 cut(s) 275, 309, 704, 738, 878, 912
BciT130I CCWGG 2 cut(s) 810, 828
BciVI GTATCC 1 cut(s) 205
BcoDI GTCTC 4 cut(s) 47, 121, 815, 1049
BfaI CTAG 1 cut(s) 1059
BfmI CTRYAG 1 cut(s) 47
BfuI GTATCC 1 cut(s) 205
BisI GCNGC 4 cut(s) 351, 612, 713, 999
BlsI GCNGC 4 cut(s) 352, 613, 714, 1000
Bme1390I CCNGG 2 cut(s) 810, 828
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 2 cut(s) 810, 828
BmsI GCATC 2 cut(s) 305, 610
BpmI CTGGAG 1 cut(s) 623
BpuEI CTTGAG 3 cut(s) 101, 524, 1031
BsaAI YACGTR 2 cut(s) 302, 570
BsaJI CCNNGG 4 cut(s) 285, 672, 808, 827
Bsc4I CCNNNNNNNGG 3 cut(s) 531, 814, 912
Bse1I ACTGG 2 cut(s) 470, 1005
Bse3DI GCAATG 2 cut(s) 582, 596
BseBI CCWGG 2 cut(s) 810, 828
BseDI CCNNGG 4 cut(s) 285, 672, 808, 827
BseGI GGATG 1 cut(s) 469
BseLI CCNNNNNNNGG 3 cut(s) 531, 814, 912
BseMI GCAATG 2 cut(s) 582, 596
BseMII CTCAG 3 cut(s) 540, 744, 810
BseNI ACTGG 2 cut(s) 470, 1005
BseSI GKGCMC 1 cut(s) 477
BseXI GCAGC 3 cut(s) 337, 598, 724
BsgI GTGCAG 4 cut(s) 336, 597, 731, 918
BshFI GGCC 1 cut(s) 1001
BsiHKAI GWGCWC 2 cut(s) 100, 477
BslFI GGGAC 1 cut(s) 303
BslI CCNNNNNNNGG 3 cut(s) 531, 814, 912
BsmAI GTCTC 4 cut(s) 47, 121, 815, 1049
BsmFI GGGAC 1 cut(s) 303
BsnI GGCC 1 cut(s) 1001
Bsp1286I GDGCHC 2 cut(s) 100, 477
Bsp1407I TGTACA 1 cut(s) 654
Bsp143I GATC 2 cut(s) 409, 950
BspACI CCGC 3 cut(s) 26, 998, 1068
BspANI GGCC 1 cut(s) 1001
BspCNI CTCAG 3 cut(s) 539, 745, 811
BspLI GGNNCC 1 cut(s) 256
BspMAI CTGCAG 1 cut(s) 51
BspPI GGATC 1 cut(s) 958
BsrDI GCAATG 2 cut(s) 582, 596
BsrGI TGTACA 1 cut(s) 654
BsrI ACTGG 2 cut(s) 470, 1005
BssECI CCNNGG 4 cut(s) 285, 672, 808, 827
BssMI GATC 2 cut(s) 409, 950
BssSI CACGAG 1 cut(s) 838
BssT1I CCWWGG 1 cut(s) 672
Bst2BI CACGAG 1 cut(s) 838
Bst2UI CCWGG 2 cut(s) 810, 828
Bst4CI ACNGT 2 cut(s) 637, 684
Bst6I CTCTTC 1 cut(s) 12
BstAPI GCANNNNNTGC 1 cut(s) 620
BstAUI TGTACA 1 cut(s) 654
BstBAI YACGTR 2 cut(s) 302, 570
BstDEI CTNAG 4 cut(s) 526, 753, 819, 878
BstF5I GGATG 1 cut(s) 469
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 2 cut(s) 412, 953
BstMAI GTCTC 4 cut(s) 47, 121, 815, 1049
BstMBI GATC 2 cut(s) 409, 950
BstMWI GCNNNNNNNGC 2 cut(s) 202, 620
BstNI CCWGG 2 cut(s) 810, 828
BstSCI CCNGG 2 cut(s) 808, 826
BstSFI CTRYAG 1 cut(s) 47
BstSLI GKGCMC 1 cut(s) 477
BstSNI TACGTA 1 cut(s) 570
BstV1I GCAGC 3 cut(s) 337, 598, 724
BsuI GTATCC 1 cut(s) 205
BsuRI GGCC 1 cut(s) 1001
BtsCI GGATG 1 cut(s) 469
BtsIMutI CAGTG 4 cut(s) 66, 477, 694, 1012
CaiI CAGNNNCTG 1 cut(s) 65
CfoI GCGC 1 cut(s) 6
CseI GACGC 1 cut(s) 432
Csp6I GTAC 2 cut(s) 567, 655
CviAII CATG 2 cut(s) 123, 1016
CviQI GTAC 2 cut(s) 567, 655
DdeI CTNAG 4 cut(s) 526, 753, 819, 878
DpnI GATC 2 cut(s) 411, 952
DpnII GATC 2 cut(s) 409, 950
DrdI GACNNNNNNGTC 1 cut(s) 61
DseDI GACNNNNNNGTC 1 cut(s) 61
EaeI YGGCCR 1 cut(s) 999
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
EciI GGCGGA 1 cut(s) 15
Ecl136II GAGCTC 1 cut(s) 98
Eco105I TACGTA 1 cut(s) 570
Eco130I CCWWGG 1 cut(s) 672
Eco24I GRGCYC 1 cut(s) 100
Eco32I GATATC 1 cut(s) 430
Eco53kI GAGCTC 1 cut(s) 98
Eco57I CTGAAG 1 cut(s) 42
Eco72I CACGTG 1 cut(s) 302
EcoICRI GAGCTC 1 cut(s) 98
EcoRII CCWGG 2 cut(s) 808, 826
EcoRV GATATC 1 cut(s) 430
EcoT14I CCWWGG 1 cut(s) 672
EcoT38I GRGCYC 1 cut(s) 100
ErhI CCWWGG 1 cut(s) 672
FaeI CATG 2 cut(s) 126, 1019
FaqI GGGAC 1 cut(s) 303
FatI CATG 2 cut(s) 122, 1015
Fnu4HI GCNGC 4 cut(s) 351, 612, 713, 999
FokI GGATG 1 cut(s) 476
FriOI GRGCYC 1 cut(s) 100
Fsp4HI GCNGC 4 cut(s) 351, 612, 713, 999
FspBI CTAG 1 cut(s) 1059
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 1 cut(s) 5
GluI GCNGC 4 cut(s) 351, 612, 713, 999
GsuI CTGGAG 1 cut(s) 623
HaeIII GGCC 1 cut(s) 1001
HgaI GACGC 1 cut(s) 432
HhaI GCGC 1 cut(s) 6
Hin1II CATG 2 cut(s) 126, 1019
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HindIII AAGCTT 1 cut(s) 875
HinfI GANTC 3 cut(s) 792, 1028, 1042
HphI GGTGA 3 cut(s) 157, 356, 496
Hpy166II GTNNAC 2 cut(s) 475, 657
Hpy188I TCNGA 6 cut(s) 71, 159, 225, 427, 529, 726
Hpy188III TCNNGA 3 cut(s) 870, 948, 1048
Hpy8I GTNNAC 2 cut(s) 475, 657
Hpy99I CGWCG 1 cut(s) 448
HpyAV CCTTC 3 cut(s) 224, 524, 887
HpyCH4III ACNGT 2 cut(s) 637, 684
HpyCH4IV ACGT 2 cut(s) 301, 569
HpyF10VI GCNNNNNNNGC 2 cut(s) 202, 620
HpyF3I CTNAG 4 cut(s) 526, 753, 819, 878
HpySE526I ACGT 2 cut(s) 301, 569
Hsp92II CATG 2 cut(s) 126, 1019
HspAI GCGC 1 cut(s) 4
Kzo9I GATC 2 cut(s) 409, 950
LmnI GCTCC 2 cut(s) 95, 254
Lsp1109I GCAGC 3 cut(s) 337, 598, 724
LweI GCATC 2 cut(s) 305, 610
MaeI CTAG 1 cut(s) 1059
MaeII ACGT 2 cut(s) 301, 569
MaeIII GTNAC 1 cut(s) 247
MalI GATC 2 cut(s) 411, 952
MboI GATC 2 cut(s) 409, 950
MboII GAAGA 4 cut(s) 29, 104, 633, 704
MhlI GDGCHC 2 cut(s) 100, 477
MluCI AATT 7 cut(s) 160, 197, 238, 259, 363, 584, 909
MlyI GAGTC 2 cut(s) 1022, 1051
MmeI TCCRAC 1 cut(s) 73
MnlI CCTC 7 cut(s) 202, 280, 333, 394, 466, 535, 883
MroXI GAANNNNTTC 1 cut(s) 21
MseI TTAA 4 cut(s) 555, 702, 749, 1022
MslI CAYNNNNRTG 1 cut(s) 482
MspR9I CCNGG 2 cut(s) 810, 828
MvaI CCWGG 2 cut(s) 810, 828
MwoI GCNNNNNNNGC 2 cut(s) 202, 620
NdeII GATC 2 cut(s) 409, 950
NlaIII CATG 2 cut(s) 126, 1019
NlaIV GGNNCC 1 cut(s) 256
NmeAIII GCCGAG 1 cut(s) 310
NsbI TGCGCA 1 cut(s) 5
PdmI GAANNNNTTC 1 cut(s) 21
PfeI GAWTC 1 cut(s) 792
PflMI CCANNNNNTGG 1 cut(s) 912
PkrI GCNGC 4 cut(s) 352, 613, 714, 1000
PleI GAGTC 2 cut(s) 1022, 1050
PmaCI CACGTG 1 cut(s) 302
PmlI CACGTG 1 cut(s) 302
PpsI GAGTC 2 cut(s) 1022, 1050
Ppu21I YACGTR 2 cut(s) 302, 570
Psp124BI GAGCTC 1 cut(s) 100
Psp6I CCWGG 2 cut(s) 808, 826
PspCI CACGTG 1 cut(s) 302
PspGI CCWGG 2 cut(s) 808, 826
PspN4I GGNNCC 1 cut(s) 256
PstI CTGCAG 1 cut(s) 51
PstNI CAGNNNCTG 1 cut(s) 65
RsaI GTAC 2 cut(s) 568, 656
RsaNI GTAC 2 cut(s) 567, 655
RseI CAYNNNNRTG 1 cut(s) 482
SacI GAGCTC 1 cut(s) 100
SaqAI TTAA 4 cut(s) 555, 702, 749, 1022
SatI GCNGC 4 cut(s) 351, 612, 713, 999
Sau3AI GATC 2 cut(s) 409, 950
SchI GAGTC 2 cut(s) 1022, 1051
ScrFI CCNGG 2 cut(s) 810, 828
SduI GDGCHC 2 cut(s) 100, 477
SfaNI GCATC 2 cut(s) 305, 610
SfcI CTRYAG 1 cut(s) 47
SmiMI CAYNNNNRTG 1 cut(s) 482
SmlI CTYRAG 3 cut(s) 116, 503, 1046
SmoI CTYRAG 3 cut(s) 116, 503, 1046
SnaBI TACGTA 1 cut(s) 570
Sse9I AATT 7 cut(s) 160, 197, 238, 259, 363, 584, 909
SsiI CCGC 3 cut(s) 26, 998, 1068
SspMI CTAG 1 cut(s) 1059
SstI GAGCTC 1 cut(s) 100
StyD4I CCNGG 2 cut(s) 808, 826
StyI CCWWGG 1 cut(s) 672
TaaI ACNGT 2 cut(s) 637, 684
TaiI ACGT 2 cut(s) 304, 572
TaqI TCGA 3 cut(s) 328, 963, 1026
TasI AATT 7 cut(s) 160, 197, 238, 259, 363, 584, 909
TatI WGTACW 1 cut(s) 654
TauI GCSGC 1 cut(s) 1001
TfiI GAWTC 1 cut(s) 792
Tru1I TTAA 4 cut(s) 555, 702, 749, 1022
Tru9I TTAA 4 cut(s) 555, 702, 749, 1022
TscAI CASTG 4 cut(s) 66, 477, 694, 1012
TseI GCWGC 3 cut(s) 350, 611, 712
TspDTI ATGAA 2 cut(s) 169, 383
TspGWI ACGGA 2 cut(s) 79, 596
TspRI CASTG 4 cut(s) 66, 477, 694, 1012
Van91I CCANNNNNTGG 1 cut(s) 912
VneI GTGCAC 1 cut(s) 473
XapI RAATTY 2 cut(s) 160, 363
XcmI CCANNNNNNNNNTGG 1 cut(s) 913
XmnI GAANNNNTTC 1 cut(s) 21
XspI CTAG 1 cut(s) 1059
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.