Rmu_ssc0000413.1_g000003

Dehydrogenase reductase SDR family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000413.1
OG0013243
Physical Location & Seq
Reverse (-)
5893 .. 8944
3052 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000413.1_g000003.1.cds

Sequence Viewer

Length: 1068 bp
atgagagatcttccactcaaaaaggctaaagccccgagcgatacttgttcgactctcagacttgaacttcacatatcccctagagcgcttacaatgtttcttctcaaggcatggagacaaacggcttttggtacatatgggtacctgaatttcaccaagtctggtttcatagaacattcaaagaatttcaagtcagaggacatggaaatacgaagagacgggaaaaactgcattgtaacgggagctaattcaggccttggttttgcgactgctgagggacttgcatcacgtggggcaactgtgtatatggtctgtcgaaacaaggagagaggtgaagcagcacaatctaaaattcaatctaaaactggtaaccaaaatgttcatttggaggtctgcgatctttcatctgttagtgatgtcaaatcatttgcatccacgttttccttaaagaatgtgccagttcatgtattggttaacaatgcaggcatgcttgagcatgatagagttaccacatcagaagggttggagttgaactttgccacaaatgtgttgggcacctatgccatgactgaactgatgttgccattgctggagaaagcagcacctgatgctcgagttattactgtttcctctggtggaatgtacacagttcccttgacgaaagatttacagttcactgatggcaacttcaatggggtggagcagtatgctcgaaacaagcgaattcaggtggcactaactgagaaatgggctgaaataaacaaaaacaaggggattgaattctattctatgcaccctggttgggctgagacacctggggttgccaacagtttgccgagtttctctaaagctctttcgggaaaacttagaacaaacgatgaaggtgcagacaccattatttggctggctttgcagccaaaagagaaattggtatcaggtgcattttattttgatagagcagaagcacctaaacacctgatgtttgcagctaccagtggctctcatggtgtaattgactcggttattgacagtctacgatgcttatctggtatctctgcacaagattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

355

Amino Acids

38.8

Weight (kDa)

8.47

Isoelectric Point (pI)

35.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013243)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09750
fragaria_vesca FvH4_2g12970
malus_domestica MD10G1036200.v1.1
prunus_persica Prupe.8G041900_v2.0.a1 Prupe.8G041900_v2.0.a1 Prupe.8G041900_v2.0.a1
pyrus_communis pycom10g02460
rosa_chinensis RchiOBHm_Chr6g0274101
rosa_laevigata RLG00000013578
rosa_multiflora Rmu_ssc0000413.1_g000003
rosa_roxburghii Rroxscaffold_7G00194650
rosa_rugosa Rorug06G0078500 Rorug06G0078500
rosa_samantha Rh6AG194500 Rh6BG198600 Rh6CG198400
rosa_wichuraiana Rw0G007930 Rw6G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 141
AccB1I GGYRCC 2 cut(s) 141, 554
AccB7I CCANNNNNTGG 1 cut(s) 900
AccI GTMKAC 1 cut(s) 1033
AcsI RAATTY 5 cut(s) 148, 184, 351, 723, 779
AcvI CACGTG 1 cut(s) 290
AfaI GTAC 3 cut(s) 133, 143, 644
AfeI AGCGCT 1 cut(s) 87
AfiI CCNNNNNNNGG 2 cut(s) 802, 900
AgsI TTSAA 7 cut(s) 65, 180, 190, 356, 532, 691, 779
AjnI CCWGG 2 cut(s) 796, 814
AjuI GAANNNNNNNTTGG 2 cut(s) 149, 181
AleI CACNNNNGTG 1 cut(s) 545
AluBI AGCT 3 cut(s) 245, 851, 989
AluI AGCT 3 cut(s) 245, 851, 989
Alw26I GTCTC 3 cut(s) 109, 210, 803
AlwNI CAGNNNCTG 1 cut(s) 605
Ama87I CYCGRG 2 cut(s) 34, 612
Aor51HI AGCGCT 1 cut(s) 87
AoxI GGCC 1 cut(s) 253
ApeKI GCWGC 4 cut(s) 338, 599, 913, 986
ApoI RAATTY 5 cut(s) 148, 184, 351, 723, 779
Asp718I GGTACC 1 cut(s) 141
AspLEI GCGC 1 cut(s) 88
AsuHPI GGTGA 2 cut(s) 145, 344
AvaI CYCGRG 2 cut(s) 34, 612
BaeGI GKGCMC 1 cut(s) 557
BanI GGYRCC 2 cut(s) 141, 554
BbrPI CACGTG 1 cut(s) 290
BbvCI CCTCAGC 1 cut(s) 273
BbvI GCAGC 4 cut(s) 350, 611, 925, 998
BccI CCATC 1 cut(s) 674
BceAI ACGGC 1 cut(s) 138
BcgI CGANNNNNNTGC 4 cut(s) 692, 726, 866, 900
BciT130I CCWGG 2 cut(s) 798, 816
BcoDI GTCTC 3 cut(s) 109, 210, 803
BfaI CTAG 1 cut(s) 81
BfoI RGCGCY 1 cut(s) 89
BglII AGATCT 1 cut(s) 7
BisI GCNGC 4 cut(s) 339, 600, 914, 987
BlsI GCNGC 4 cut(s) 340, 601, 915, 988
Bme1390I CCNGG 2 cut(s) 798, 816
BmeT110I CYCGRG 2 cut(s) 34, 612
BmiI GGNNCC 2 cut(s) 143, 556
BmrFI CCNGG 2 cut(s) 798, 816
BmsI GCATC 4 cut(s) 293, 440, 598, 1028
BpmI CTGGAG 1 cut(s) 611
Bpu10I CCTNAGC 1 cut(s) 273
BpuEI CTTGAG 2 cut(s) 89, 512
BsaAI YACGTR 1 cut(s) 290
BsaBI GATNNNNATC 1 cut(s) 1042
BsaJI CCNNGG 3 cut(s) 256, 796, 815
Bsc4I CCNNNNNNNGG 2 cut(s) 802, 900
Bse1I ACTGG 3 cut(s) 370, 458, 993
Bse3DI GCAATG 1 cut(s) 584
Bse8I GATNNNNATC 1 cut(s) 1042
BseBI CCWGG 2 cut(s) 798, 816
BseDI CCNNGG 3 cut(s) 256, 796, 815
BseGI GGATG 1 cut(s) 431
BseJI GATNNNNATC 1 cut(s) 1042
BseLI CCNNNNNNNGG 2 cut(s) 802, 900
BseMI GCAATG 1 cut(s) 584
BseMII CTCAG 4 cut(s) 70, 264, 732, 798
BseNI ACTGG 3 cut(s) 370, 458, 993
BseSI GKGCMC 1 cut(s) 557
BseXI GCAGC 4 cut(s) 350, 611, 925, 998
BsgI GTGCAG 2 cut(s) 906, 1041
BshFI GGCC 1 cut(s) 255
BshNI GGYRCC 2 cut(s) 141, 554
BsiHKCI CYCGRG 2 cut(s) 34, 612
BslFI GGGAC 1 cut(s) 291
BslI CCNNNNNNNGG 2 cut(s) 802, 900
BsmAI GTCTC 3 cut(s) 109, 210, 803
BsmBI CGTCTC 1 cut(s) 210
BsmFI GGGAC 1 cut(s) 291
BsnI GGCC 1 cut(s) 255
BsoBI CYCGRG 2 cut(s) 34, 612
Bsp1286I GDGCHC 1 cut(s) 557
Bsp1407I TGTACA 1 cut(s) 642
Bsp143I GATC 2 cut(s) 7, 397
BspANI GGCC 1 cut(s) 255
BspCNI CTCAG 4 cut(s) 69, 265, 733, 799
BspLI GGNNCC 2 cut(s) 143, 556
BspT107I GGYRCC 2 cut(s) 141, 554
BsrDI GCAATG 1 cut(s) 584
BsrGI TGTACA 1 cut(s) 642
BsrI ACTGG 3 cut(s) 370, 458, 993
BssECI CCNNGG 3 cut(s) 256, 796, 815
BssMI GATC 2 cut(s) 7, 397
BssT1I CCWWGG 1 cut(s) 256
Bst2UI CCWGG 2 cut(s) 798, 816
Bst4CI ACNGT 6 cut(s) 301, 625, 649, 672, 830, 1031
Bst6I CTCTTC 1 cut(s) 208
BstAPI GCANNNNNTGC 1 cut(s) 608
BstAUI TGTACA 1 cut(s) 642
BstBAI YACGTR 1 cut(s) 290
BstC8I GCNNGC 3 cut(s) 484, 488, 906
BstDEI CTNAG 5 cut(s) 56, 273, 741, 807, 866
BstEII GGTNACC 1 cut(s) 368
BstF5I GGATG 1 cut(s) 431
BstH2I RGCGCY 1 cut(s) 89
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 2 cut(s) 10, 400
BstMAI GTCTC 3 cut(s) 109, 210, 803
BstMBI GATC 2 cut(s) 7, 397
BstMWI GCNNNNNNNGC 2 cut(s) 608, 910
BstNI CCWGG 2 cut(s) 798, 816
BstNSI RCATGY 1 cut(s) 490
BstPI GGTNACC 1 cut(s) 368
BstSCI CCNGG 2 cut(s) 796, 814
BstSLI GKGCMC 1 cut(s) 557
BstV1I GCAGC 4 cut(s) 350, 611, 925, 998
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BsuRI GGCC 1 cut(s) 255
BtsCI GGATG 1 cut(s) 431
BtsIMutI CAGTG 2 cut(s) 675, 1000
Cac8I GCNNGC 3 cut(s) 484, 488, 906
CaiI CAGNNNCTG 1 cut(s) 605
CfoI GCGC 1 cut(s) 88
Csp6I GTAC 3 cut(s) 132, 142, 643
CviAII CATG 7 cut(s) 111, 202, 464, 487, 497, 565, 1004
CviQI GTAC 3 cut(s) 132, 142, 643
DdeI CTNAG 5 cut(s) 56, 273, 741, 807, 866
DpnI GATC 2 cut(s) 9, 399
DpnII GATC 2 cut(s) 7, 397
Eam1104I CTCTTC 1 cut(s) 208
EarI CTCTTC 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 256
Eco147I AGGCCT 1 cut(s) 255
Eco47III AGCGCT 1 cut(s) 87
Eco72I CACGTG 1 cut(s) 290
Eco88I CYCGRG 2 cut(s) 34, 612
Eco91I GGTNACC 1 cut(s) 368
EcoO65I GGTNACC 1 cut(s) 368
EcoRI GAATTC 2 cut(s) 723, 779
EcoRII CCWGG 2 cut(s) 796, 814
EcoT14I CCWWGG 1 cut(s) 256
ErhI CCWWGG 1 cut(s) 256
Esp3I CGTCTC 1 cut(s) 210
FaeI CATG 7 cut(s) 114, 205, 467, 490, 500, 568, 1007
FaqI GGGAC 1 cut(s) 291
FatI CATG 7 cut(s) 110, 201, 463, 486, 496, 564, 1003
FauNDI CATATG 1 cut(s) 136
FblI GTMKAC 1 cut(s) 1033
Fnu4HI GCNGC 4 cut(s) 339, 600, 914, 987
FokI GGATG 1 cut(s) 418
Fsp4HI GCNGC 4 cut(s) 339, 600, 914, 987
FspBI CTAG 1 cut(s) 81
GlaI GCGC 1 cut(s) 87
GluI GCNGC 4 cut(s) 339, 600, 914, 987
GsuI CTGGAG 1 cut(s) 611
HaeII RGCGCY 1 cut(s) 89
HaeIII GGCC 1 cut(s) 255
HhaI GCGC 1 cut(s) 88
Hin1II CATG 7 cut(s) 114, 205, 467, 490, 500, 568, 1007
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HincII GTYRAC 1 cut(s) 475
HindII GTYRAC 1 cut(s) 475
HinfI GANTC 2 cut(s) 52, 1016
HpaI GTTAAC 1 cut(s) 475
HphI GGTGA 2 cut(s) 145, 344
Hpy166II GTNNAC 4 cut(s) 475, 645, 675, 1034
Hpy188I TCNGA 3 cut(s) 59, 196, 517
Hpy188III TCNNGA 1 cut(s) 858
Hpy8I GTNNAC 4 cut(s) 475, 645, 675, 1034
HpyAV CCTTC 2 cut(s) 512, 875
HpyCH4III ACNGT 6 cut(s) 301, 625, 649, 672, 830, 1031
HpyCH4IV ACGT 2 cut(s) 289, 437
HpyF10VI GCNNNNNNNGC 2 cut(s) 608, 910
HpyF3I CTNAG 5 cut(s) 56, 273, 741, 807, 866
HpySE526I ACGT 2 cut(s) 289, 437
Hsp92II CATG 7 cut(s) 114, 205, 467, 490, 500, 568, 1007
HspAI GCGC 1 cut(s) 86
KpnI GGTACC 1 cut(s) 145
KspAI GTTAAC 1 cut(s) 475
Kzo9I GATC 2 cut(s) 7, 397
LmnI GCTCC 2 cut(s) 242, 700
Lsp1109I GCAGC 4 cut(s) 350, 611, 925, 998
LweI GCATC 4 cut(s) 293, 440, 598, 1028
MaeI CTAG 1 cut(s) 81
MaeII ACGT 2 cut(s) 289, 437
MaeIII GTNAC 3 cut(s) 235, 368, 505
MalI GATC 2 cut(s) 9, 399
MboI GATC 2 cut(s) 7, 397
MboII GAAGA 2 cut(s) 92, 225
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 557
MluCI AATT 8 cut(s) 148, 184, 247, 351, 723, 779, 926, 1011
MlyI GAGTC 2 cut(s) 46, 1010
MmeI TCCRAC 1 cut(s) 504
MnlI CCTC 5 cut(s) 190, 268, 323, 382, 640
MseI TTAA 2 cut(s) 446, 474
MslI CAYNNNNRTG 1 cut(s) 545
MspR9I CCNGG 2 cut(s) 798, 816
MvaI CCWGG 2 cut(s) 798, 816
MwoI GCNNNNNNNGC 2 cut(s) 608, 910
NdeI CATATG 1 cut(s) 136
NdeII GATC 2 cut(s) 7, 397
NlaIII CATG 7 cut(s) 114, 205, 467, 490, 500, 568, 1007
NlaIV GGNNCC 2 cut(s) 143, 556
NmeAIII GCCGAG 1 cut(s) 861
NspI RCATGY 1 cut(s) 490
OliI CACNNNNGTG 1 cut(s) 545
PaeI GCATGC 1 cut(s) 490
PaeR7I CTCGAG 1 cut(s) 612
PceI AGGCCT 1 cut(s) 255
PcsI WCGNNNNNNNCGW 1 cut(s) 718
PflMI CCANNNNNTGG 1 cut(s) 900
PkrI GCNGC 4 cut(s) 340, 601, 915, 988
PleI GAGTC 2 cut(s) 46, 1010
PmaCI CACGTG 1 cut(s) 290
PmlI CACGTG 1 cut(s) 290
PpsI GAGTC 2 cut(s) 46, 1010
Ppu21I YACGTR 1 cut(s) 290
Psp6I CCWGG 2 cut(s) 796, 814
PspCI CACGTG 1 cut(s) 290
PspEI GGTNACC 1 cut(s) 368
PspGI CCWGG 2 cut(s) 796, 814
PspN4I GGNNCC 2 cut(s) 143, 556
PspXI VCTCGAGB 1 cut(s) 612
PstNI CAGNNNCTG 1 cut(s) 605
PsuI RGATCY 1 cut(s) 7
RsaI GTAC 3 cut(s) 133, 143, 644
RsaNI GTAC 3 cut(s) 132, 142, 643
RseI CAYNNNNRTG 1 cut(s) 545
SaqAI TTAA 2 cut(s) 446, 474
SatI GCNGC 4 cut(s) 339, 600, 914, 987
Sau3AI GATC 2 cut(s) 7, 397
SchI GAGTC 2 cut(s) 46, 1010
ScrFI CCNGG 2 cut(s) 798, 816
SduI GDGCHC 1 cut(s) 557
SfaNI GCATC 4 cut(s) 293, 440, 598, 1028
Sfr274I CTCGAG 1 cut(s) 612
SlaI CTCGAG 1 cut(s) 612
SmiMI CAYNNNNRTG 1 cut(s) 545
SmlI CTYRAG 3 cut(s) 104, 491, 612
SmoI CTYRAG 3 cut(s) 104, 491, 612
SphI GCATGC 1 cut(s) 490
Sse9I AATT 8 cut(s) 148, 184, 247, 351, 723, 779, 926, 1011
SseBI AGGCCT 1 cut(s) 255
SspMI CTAG 1 cut(s) 81
StuI AGGCCT 1 cut(s) 255
StyD4I CCNGG 2 cut(s) 796, 814
StyI CCWWGG 1 cut(s) 256
TaaI ACNGT 6 cut(s) 301, 625, 649, 672, 830, 1031
TaiI ACGT 2 cut(s) 292, 440
TaqI TCGA 4 cut(s) 50, 316, 613, 712
TasI AATT 8 cut(s) 148, 184, 247, 351, 723, 779, 926, 1011
TatI WGTACW 1 cut(s) 642
Tru1I TTAA 2 cut(s) 446, 474
Tru9I TTAA 2 cut(s) 446, 474
TscAI CASTG 2 cut(s) 682, 1000
TseI GCWGC 4 cut(s) 338, 599, 913, 986
TspDTI ATGAA 5 cut(s) 157, 371, 393, 452, 894
TspRI CASTG 2 cut(s) 682, 1000
Van91I CCANNNNNTGG 1 cut(s) 900
XapI RAATTY 5 cut(s) 148, 184, 351, 723, 779
XceI RCATGY 1 cut(s) 490
XcmI CCANNNNNNNNNTGG 2 cut(s) 547, 901
XhoI CTCGAG 1 cut(s) 612
XmiI GTMKAC 1 cut(s) 1033
XspI CTAG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.