Rw0G007930

Dehydrogenase reductase SDR family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00292
OG0013243
Physical Location & Seq
Reverse (-)
45841 .. 49022
3182 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G007930.1

Sequence Viewer

Length: 921 bp
ATGTTGAAGTATGTGCATTGTAGAGAACATTCAAAGAATTTCAAGTCGGAGGACATGGAAATACGGAGAGATGGGAAAAACTGCATTGTAACAGGAGCTAATTCAGGCCTTGGTTTTGCGACTGCTGAGGGACTTGCATCACGTGGGGCAACTGTGTATATGGTCTGTCGAAACAAGGAGAGAGGTGAAGCAGCACAATCTAAAATTCAATCTAAAACTGGTAACCAAAATGTTCATTTGGAGGTCTGCGATCTTTCATCTGTTAGTGATGTCAAATCATTTGCATCCACGTTTTCCTTAAAGAATGTGCCAGTTCATGTATTGGTTAACAATGCAGGCATGCTTGAGCATGATAGAGTTACCACATCAGAAGGGTTGGAGTTGAACTTTGCCACAAATGTGTTGGGCACCTATGCCATGACTGAACTGATGTTGCCATTGCTGGAGAAAGCAGCACCTGATGCTCGAGTTATTACTGTTTCCTCTGGTGGAATGTACACAGTTCCCTTGACCAAAGATTTACAGTTCACTGATGGCAACTTCAATGGGGTGGAGCAGTATGCTCGAAACAAGCGAGTTCAGGTGGCACTAACTGAGAAATGGGCTGAAATAAACAAAAACAAGGGGATTGGATTCTATTCTATGCACCCTGGTTGGGCTGAGACGCCTGGGGTTGCCAACAGTTTGCCGAGTTTCTCTAAAGCTCTTTCGGGAAAACTTAGAACAAACGATGAAGGTGCAGACACCATTGTTTGGCTGGCTTTGCAGCCAAAAGAGAAATTGGTATCAGGTGCATTTTATTTTGATAGAGCAGAAGCACCTAAACACCTGATGTTTGCAGCTACCAGTGGCTCTCATGGTGTAATTGACTCGGTTATTGACAGTCTACGACGCTTATCTGGTATCTCTGCACAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

306

Amino Acids

33.3

Weight (kDa)

7.7

Isoelectric Point (pI)

33.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 26 - 226 7.5e-24 short chain dehydrogenase
Epimerase PF01370 29 - 206 6.1e-09 NAD dependent epimerase/dehydratase family
KR PF08659 29 - 163 1e-08 KR domain
adh_short_C2 PF13561 32 - 254 1.9e-17 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013243)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09750
fragaria_vesca FvH4_2g12970
malus_domestica MD10G1036200.v1.1
prunus_persica Prupe.8G041900_v2.0.a1 Prupe.8G041900_v2.0.a1 Prupe.8G041900_v2.0.a1
pyrus_communis pycom10g02460
rosa_chinensis RchiOBHm_Chr6g0274101
rosa_laevigata RLG00000013578
rosa_multiflora Rmu_ssc0000413.1_g000003
rosa_roxburghii Rroxscaffold_7G00194650
rosa_rugosa Rorug06G0078500 Rorug06G0078500
rosa_samantha Rh6AG194500 Rh6BG198600 Rh6CG198400
rosa_wichuraiana Rw0G007930 Rw6G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 407
AccB7I CCANNNNNTGG 1 cut(s) 753
AccI GTMKAC 1 cut(s) 886
AcsI RAATTY 2 cut(s) 37, 204
AcvI CACGTG 1 cut(s) 143
AcyI GRCGYC 1 cut(s) 665
AfaI GTAC 1 cut(s) 497
AfiI CCNNNNNNNGG 2 cut(s) 655, 753
AgsI TTSAA 6 cut(s) 7, 33, 43, 209, 385, 544
AjnI CCWGG 2 cut(s) 649, 667
AleI CACNNNNGTG 1 cut(s) 398
AluBI AGCT 3 cut(s) 98, 704, 842
AluI AGCT 3 cut(s) 98, 704, 842
Alw26I GTCTC 1 cut(s) 656
AlwNI CAGNNNCTG 1 cut(s) 458
Ama87I CYCGRG 1 cut(s) 465
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 4 cut(s) 191, 452, 766, 839
ApoI RAATTY 2 cut(s) 37, 204
AsuHPI GGTGA 1 cut(s) 197
AvaI CYCGRG 1 cut(s) 465
BaeGI GKGCMC 1 cut(s) 410
BanI GGYRCC 1 cut(s) 407
BbrPI CACGTG 1 cut(s) 143
BbvCI CCTCAGC 1 cut(s) 126
BbvI GCAGC 4 cut(s) 203, 464, 778, 851
BccI CCATC 2 cut(s) 65, 527
BcgI CGANNNNNNTGC 4 cut(s) 545, 579, 719, 753
BciT130I CCWGG 2 cut(s) 651, 669
BcoDI GTCTC 1 cut(s) 656
BisI GCNGC 4 cut(s) 192, 453, 767, 840
BlsI GCNGC 4 cut(s) 193, 454, 768, 841
Bme1390I CCNGG 2 cut(s) 651, 669
BmeT110I CYCGRG 1 cut(s) 465
BmiI GGNNCC 1 cut(s) 409
BmrFI CCNGG 2 cut(s) 651, 669
BmsI GCATC 3 cut(s) 146, 293, 451
BpmI CTGGAG 1 cut(s) 464
Bpu10I CCTNAGC 1 cut(s) 126
BpuEI CTTGAG 1 cut(s) 365
BsaAI YACGTR 1 cut(s) 143
BsaHI GRCGYC 1 cut(s) 665
BsaJI CCNNGG 3 cut(s) 109, 649, 668
Bsc4I CCNNNNNNNGG 2 cut(s) 655, 753
Bse1I ACTGG 3 cut(s) 223, 311, 846
Bse3DI GCAATG 1 cut(s) 437
BseBI CCWGG 2 cut(s) 651, 669
BseDI CCNNGG 3 cut(s) 109, 649, 668
BseGI GGATG 1 cut(s) 284
BseLI CCNNNNNNNGG 2 cut(s) 655, 753
BseMI GCAATG 1 cut(s) 437
BseMII CTCAG 3 cut(s) 117, 585, 651
BseNI ACTGG 3 cut(s) 223, 311, 846
BseSI GKGCMC 1 cut(s) 410
BseXI GCAGC 4 cut(s) 203, 464, 778, 851
BsgI GTGCAG 2 cut(s) 759, 894
BshFI GGCC 1 cut(s) 108
BshNI GGYRCC 1 cut(s) 407
BsiHKCI CYCGRG 1 cut(s) 465
BslFI GGGAC 1 cut(s) 144
BslI CCNNNNNNNGG 2 cut(s) 655, 753
BsmAI GTCTC 1 cut(s) 656
BsmBI CGTCTC 1 cut(s) 656
BsmFI GGGAC 1 cut(s) 144
BsnI GGCC 1 cut(s) 108
BsoBI CYCGRG 1 cut(s) 465
Bsp1286I GDGCHC 1 cut(s) 410
Bsp1407I TGTACA 1 cut(s) 495
Bsp143I GATC 1 cut(s) 250
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 3 cut(s) 118, 586, 652
BspLI GGNNCC 1 cut(s) 409
BspT107I GGYRCC 1 cut(s) 407
BsrDI GCAATG 1 cut(s) 437
BsrGI TGTACA 1 cut(s) 495
BsrI ACTGG 3 cut(s) 223, 311, 846
BssECI CCNNGG 3 cut(s) 109, 649, 668
BssMI GATC 1 cut(s) 250
BssNI GRCGYC 1 cut(s) 665
BssT1I CCWWGG 1 cut(s) 109
Bst2UI CCWGG 2 cut(s) 651, 669
Bst4CI ACNGT 6 cut(s) 154, 478, 502, 525, 683, 884
BstACI GRCGYC 1 cut(s) 665
BstAPI GCANNNNNTGC 1 cut(s) 461
BstAUI TGTACA 1 cut(s) 495
BstBAI YACGTR 1 cut(s) 143
BstC8I GCNNGC 3 cut(s) 337, 341, 759
BstDEI CTNAG 4 cut(s) 126, 594, 660, 719
BstEII GGTNACC 1 cut(s) 221
BstF5I GGATG 1 cut(s) 284
BstKTI GATC 1 cut(s) 253
BstMAI GTCTC 1 cut(s) 656
BstMBI GATC 1 cut(s) 250
BstMWI GCNNNNNNNGC 2 cut(s) 461, 763
BstNI CCWGG 2 cut(s) 651, 669
BstNSI RCATGY 1 cut(s) 343
BstPI GGTNACC 1 cut(s) 221
BstSCI CCNGG 2 cut(s) 649, 667
BstSLI GKGCMC 1 cut(s) 410
BstV1I GCAGC 4 cut(s) 203, 464, 778, 851
BsuRI GGCC 1 cut(s) 108
BtsCI GGATG 1 cut(s) 284
BtsIMutI CAGTG 2 cut(s) 528, 853
Cac8I GCNNGC 3 cut(s) 337, 341, 759
CaiI CAGNNNCTG 1 cut(s) 458
CseI GACGC 2 cut(s) 673, 900
Csp6I GTAC 1 cut(s) 496
CviAII CATG 6 cut(s) 55, 317, 340, 350, 418, 857
CviQI GTAC 1 cut(s) 496
DdeI CTNAG 4 cut(s) 126, 594, 660, 719
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 109
Eco147I AGGCCT 1 cut(s) 108
Eco72I CACGTG 1 cut(s) 143
Eco88I CYCGRG 1 cut(s) 465
Eco91I GGTNACC 1 cut(s) 221
EcoO65I GGTNACC 1 cut(s) 221
EcoRII CCWGG 2 cut(s) 649, 667
EcoT14I CCWWGG 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 109
Esp3I CGTCTC 1 cut(s) 656
FaeI CATG 6 cut(s) 58, 320, 343, 353, 421, 860
FaqI GGGAC 1 cut(s) 144
FatI CATG 6 cut(s) 54, 316, 339, 349, 417, 856
FblI GTMKAC 1 cut(s) 886
Fnu4HI GCNGC 4 cut(s) 192, 453, 767, 840
FokI GGATG 1 cut(s) 271
Fsp4HI GCNGC 4 cut(s) 192, 453, 767, 840
GluI GCNGC 4 cut(s) 192, 453, 767, 840
GsuI CTGGAG 1 cut(s) 464
HaeIII GGCC 1 cut(s) 108
HgaI GACGC 2 cut(s) 673, 900
Hin1I GRCGYC 1 cut(s) 665
Hin1II CATG 6 cut(s) 58, 320, 343, 353, 421, 860
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HinfI GANTC 2 cut(s) 633, 869
HpaI GTTAAC 1 cut(s) 328
HphI GGTGA 1 cut(s) 197
Hpy166II GTNNAC 4 cut(s) 328, 498, 528, 887
Hpy188I TCNGA 2 cut(s) 49, 370
Hpy188III TCNNGA 1 cut(s) 711
Hpy8I GTNNAC 4 cut(s) 328, 498, 528, 887
Hpy99I CGWCG 1 cut(s) 894
HpyAV CCTTC 2 cut(s) 365, 728
HpyCH4III ACNGT 6 cut(s) 154, 478, 502, 525, 683, 884
HpyCH4IV ACGT 2 cut(s) 142, 290
HpyF10VI GCNNNNNNNGC 2 cut(s) 461, 763
HpyF3I CTNAG 4 cut(s) 126, 594, 660, 719
HpySE526I ACGT 2 cut(s) 142, 290
Hsp92I GRCGYC 1 cut(s) 665
Hsp92II CATG 6 cut(s) 58, 320, 343, 353, 421, 860
KspAI GTTAAC 1 cut(s) 328
Kzo9I GATC 1 cut(s) 250
LmnI GCTCC 2 cut(s) 95, 553
Lsp1109I GCAGC 4 cut(s) 203, 464, 778, 851
LweI GCATC 3 cut(s) 146, 293, 451
MaeII ACGT 2 cut(s) 142, 290
MaeIII GTNAC 3 cut(s) 88, 221, 358
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MhlI GDGCHC 1 cut(s) 410
MluCI AATT 5 cut(s) 37, 100, 204, 779, 864
MlyI GAGTC 1 cut(s) 863
MmeI TCCRAC 2 cut(s) 27, 357
MnlI CCTC 5 cut(s) 43, 121, 176, 235, 493
MseI TTAA 2 cut(s) 299, 327
MslI CAYNNNNRTG 1 cut(s) 398
MspR9I CCNGG 2 cut(s) 651, 669
MvaI CCWGG 2 cut(s) 651, 669
MwoI GCNNNNNNNGC 2 cut(s) 461, 763
NdeII GATC 1 cut(s) 250
NlaIII CATG 6 cut(s) 58, 320, 343, 353, 421, 860
NlaIV GGNNCC 1 cut(s) 409
NmeAIII GCCGAG 1 cut(s) 714
NspI RCATGY 1 cut(s) 343
OliI CACNNNNGTG 1 cut(s) 398
PaeI GCATGC 1 cut(s) 343
PaeR7I CTCGAG 1 cut(s) 465
PceI AGGCCT 1 cut(s) 108
PcsI WCGNNNNNNNCGW 1 cut(s) 571
PfeI GAWTC 1 cut(s) 633
PflMI CCANNNNNTGG 1 cut(s) 753
PkrI GCNGC 4 cut(s) 193, 454, 768, 841
PleI GAGTC 1 cut(s) 863
PmaCI CACGTG 1 cut(s) 143
PmlI CACGTG 1 cut(s) 143
PpsI GAGTC 1 cut(s) 863
Ppu21I YACGTR 1 cut(s) 143
Psp6I CCWGG 2 cut(s) 649, 667
PspCI CACGTG 1 cut(s) 143
PspEI GGTNACC 1 cut(s) 221
PspGI CCWGG 2 cut(s) 649, 667
PspN4I GGNNCC 1 cut(s) 409
PspXI VCTCGAGB 1 cut(s) 465
PstNI CAGNNNCTG 1 cut(s) 458
RsaI GTAC 1 cut(s) 497
RsaNI GTAC 1 cut(s) 496
RseI CAYNNNNRTG 1 cut(s) 398
SaqAI TTAA 2 cut(s) 299, 327
SatI GCNGC 4 cut(s) 192, 453, 767, 840
Sau3AI GATC 1 cut(s) 250
SchI GAGTC 1 cut(s) 863
ScrFI CCNGG 2 cut(s) 651, 669
SduI GDGCHC 1 cut(s) 410
SfaNI GCATC 3 cut(s) 146, 293, 451
Sfr274I CTCGAG 1 cut(s) 465
SlaI CTCGAG 1 cut(s) 465
SmiMI CAYNNNNRTG 1 cut(s) 398
SmlI CTYRAG 2 cut(s) 344, 465
SmoI CTYRAG 2 cut(s) 344, 465
SphI GCATGC 1 cut(s) 343
Sse9I AATT 5 cut(s) 37, 100, 204, 779, 864
SseBI AGGCCT 1 cut(s) 108
StuI AGGCCT 1 cut(s) 108
StyD4I CCNGG 2 cut(s) 649, 667
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 6 cut(s) 154, 478, 502, 525, 683, 884
TaiI ACGT 2 cut(s) 145, 293
TaqI TCGA 3 cut(s) 169, 466, 565
TasI AATT 5 cut(s) 37, 100, 204, 779, 864
TatI WGTACW 1 cut(s) 495
TfiI GAWTC 1 cut(s) 633
Tru1I TTAA 2 cut(s) 299, 327
Tru9I TTAA 2 cut(s) 299, 327
TscAI CASTG 2 cut(s) 535, 853
TseI GCWGC 4 cut(s) 191, 452, 766, 839
TspDTI ATGAA 4 cut(s) 224, 246, 305, 747
TspGWI ACGGA 1 cut(s) 79
TspRI CASTG 2 cut(s) 535, 853
Van91I CCANNNNNTGG 1 cut(s) 753
XapI RAATTY 2 cut(s) 37, 204
XceI RCATGY 1 cut(s) 343
XcmI CCANNNNNNNNNTGG 2 cut(s) 400, 754
XhoI CTCGAG 1 cut(s) 465
XmiI GTMKAC 1 cut(s) 886
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.