Rh6CG198400

Dehydrogenase reductase SDR family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0013243
Physical Location & Seq
Forward (+)
33093784 .. 33097367
3584 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG198400.1

Sequence Viewer

Length: 795 bp
ATGTTGAAGTATCTGCATTGTAGAGAACATTCAAAGAATTTCAAGTCGGAGGACATGGAAATACGGAGAGATGGGAAAAACTGCATTGTAACAGGAGCTAATTCAGGCCTTGGTTTTGCGACTGCTGAGGGACTTGCATCACGTGGGGCAACTGTGTATATGGTCTGTCGAAACAAGGAGAGAGGTGAAGCAGCACAATCTAAAATTCAATCTAAAACTGGTAACCAAAATGTTCATTTGGAGGTCTGCGATCTTTCATCTGTTAGTGATGTCAAATCATTTGCATCCACGTTTTCCTTAAAGAATGTGCCAGTTCATGTATTGGTTAACAACGCAGGCATGCTTGAGCATGATAGAGTTACCACATCAGAAGGGTTGGAGTTGAACTTTGCCACAAATGTGTTGGGCACCTATGCCATGACTGAACTGATGTTGCCATTGCTGGAGAAAGCAGCACCTGATGCTCGAGTTATTACTGTTTCCTCTGGTGGAATGTACACAGTTCCCTTGACCAAAGATTTACAGTTCACTGATGGCAACTTCAATGGTGTGGAGCAGTATGCTCGAAACAAGCGAATTCAGGTGGCACTAACTGAGAAATGGGCTGAAATAAACAAAAACAAGGGGATTGGATTCTATTCTATGCACCCTGGTTGGGCTGAGACACCTGGGGTTGCCAACAGTTTGCCGAGTTTCTCTAAAGCGTACGGAACATTTCACCTATCACATTATATCTGCCTTTTTTTTTTTTTTTTTTGGTTCTACTCTTATTTCTTCCTTTTATATCTGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

264

Amino Acids

29.55

Weight (kDa)

8.2

Isoelectric Point (pI)

34.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 26 - 225 6e-24 short chain dehydrogenase
KR PF08659 29 - 164 6.9e-09 KR domain
Epimerase PF01370 29 - 205 7.1e-09 NAD dependent epimerase/dehydratase family
adh_short_C2 PF13561 32 - 237 2.9e-17 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013243)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09750
fragaria_vesca FvH4_2g12970
malus_domestica MD10G1036200.v1.1
prunus_persica Prupe.8G041900_v2.0.a1 Prupe.8G041900_v2.0.a1 Prupe.8G041900_v2.0.a1
pyrus_communis pycom10g02460
rosa_chinensis RchiOBHm_Chr6g0274101
rosa_laevigata RLG00000013578
rosa_multiflora Rmu_ssc0000413.1_g000003
rosa_roxburghii Rroxscaffold_7G00194650
rosa_rugosa Rorug06G0078500 Rorug06G0078500
rosa_samantha Rh6AG194500 Rh6BG198600 Rh6CG198400
rosa_wichuraiana Rw0G007930 Rw6G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 407
AcsI RAATTY 3 cut(s) 37, 204, 576
AcvI CACGTG 1 cut(s) 143
AfaI GTAC 2 cut(s) 497, 707
AfiI CCNNNNNNNGG 1 cut(s) 655
AgsI TTSAA 6 cut(s) 7, 33, 43, 209, 385, 544
AjnI CCWGG 2 cut(s) 649, 667
AleI CACNNNNGTG 1 cut(s) 398
AluBI AGCT 1 cut(s) 98
AluI AGCT 1 cut(s) 98
Alw26I GTCTC 1 cut(s) 656
AlwNI CAGNNNCTG 1 cut(s) 458
Ama87I CYCGRG 1 cut(s) 465
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 2 cut(s) 191, 452
ApoI RAATTY 3 cut(s) 37, 204, 576
AsuHPI GGTGA 2 cut(s) 197, 710
AvaI CYCGRG 1 cut(s) 465
BaeGI GKGCMC 1 cut(s) 410
BanI GGYRCC 1 cut(s) 407
BbrPI CACGTG 1 cut(s) 143
BbvCI CCTCAGC 1 cut(s) 126
BbvI GCAGC 2 cut(s) 203, 464
BccI CCATC 2 cut(s) 65, 527
BcgI CGANNNNNNTGC 2 cut(s) 545, 579
BciT130I CCWGG 2 cut(s) 651, 669
BcoDI GTCTC 1 cut(s) 656
BisI GCNGC 2 cut(s) 192, 453
BlsI GCNGC 2 cut(s) 193, 454
Bme1390I CCNGG 2 cut(s) 651, 669
BmeT110I CYCGRG 1 cut(s) 465
BmiI GGNNCC 1 cut(s) 409
BmrFI CCNGG 2 cut(s) 651, 669
BmsI GCATC 3 cut(s) 146, 293, 451
BpmI CTGGAG 1 cut(s) 464
Bpu10I CCTNAGC 1 cut(s) 126
BpuEI CTTGAG 1 cut(s) 365
BsaAI YACGTR 1 cut(s) 143
BsaJI CCNNGG 3 cut(s) 109, 649, 668
Bsc4I CCNNNNNNNGG 1 cut(s) 655
Bse1I ACTGG 2 cut(s) 223, 311
Bse3DI GCAATG 1 cut(s) 437
BseBI CCWGG 2 cut(s) 651, 669
BseDI CCNNGG 3 cut(s) 109, 649, 668
BseGI GGATG 1 cut(s) 284
BseLI CCNNNNNNNGG 1 cut(s) 655
BseMI GCAATG 1 cut(s) 437
BseMII CTCAG 3 cut(s) 117, 585, 651
BseNI ACTGG 2 cut(s) 223, 311
BseSI GKGCMC 1 cut(s) 410
BseXI GCAGC 2 cut(s) 203, 464
BshFI GGCC 1 cut(s) 108
BshNI GGYRCC 1 cut(s) 407
BsiHKCI CYCGRG 1 cut(s) 465
BsiWI CGTACG 1 cut(s) 705
BslFI GGGAC 1 cut(s) 144
BslI CCNNNNNNNGG 1 cut(s) 655
BsmAI GTCTC 1 cut(s) 656
BsmFI GGGAC 1 cut(s) 144
BsnI GGCC 1 cut(s) 108
BsoBI CYCGRG 1 cut(s) 465
Bsp1286I GDGCHC 1 cut(s) 410
Bsp1407I TGTACA 1 cut(s) 495
Bsp143I GATC 1 cut(s) 250
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 3 cut(s) 118, 586, 652
BspLI GGNNCC 1 cut(s) 409
BspT107I GGYRCC 1 cut(s) 407
BsrDI GCAATG 1 cut(s) 437
BsrGI TGTACA 1 cut(s) 495
BsrI ACTGG 2 cut(s) 223, 311
BssECI CCNNGG 3 cut(s) 109, 649, 668
BssMI GATC 1 cut(s) 250
BssT1I CCWWGG 1 cut(s) 109
Bst2UI CCWGG 2 cut(s) 651, 669
Bst4CI ACNGT 5 cut(s) 154, 478, 502, 525, 683
BstAPI GCANNNNNTGC 1 cut(s) 461
BstAUI TGTACA 1 cut(s) 495
BstBAI YACGTR 1 cut(s) 143
BstC8I GCNNGC 2 cut(s) 337, 341
BstDEI CTNAG 3 cut(s) 126, 594, 660
BstEII GGTNACC 1 cut(s) 221
BstF5I GGATG 1 cut(s) 284
BstKTI GATC 1 cut(s) 253
BstMAI GTCTC 1 cut(s) 656
BstMBI GATC 1 cut(s) 250
BstMWI GCNNNNNNNGC 1 cut(s) 461
BstNI CCWGG 2 cut(s) 651, 669
BstNSI RCATGY 1 cut(s) 343
BstPI GGTNACC 1 cut(s) 221
BstSCI CCNGG 2 cut(s) 649, 667
BstSLI GKGCMC 1 cut(s) 410
BstV1I GCAGC 2 cut(s) 203, 464
BsuRI GGCC 1 cut(s) 108
BtsCI GGATG 1 cut(s) 284
BtsIMutI CAGTG 1 cut(s) 528
Cac8I GCNNGC 2 cut(s) 337, 341
CaiI CAGNNNCTG 1 cut(s) 458
Csp6I GTAC 2 cut(s) 496, 706
CviAII CATG 5 cut(s) 55, 317, 340, 350, 418
CviJI RGCY 4 cut(s) 98, 108, 605, 659
CviKI_1 RGCY 4 cut(s) 98, 108, 605, 659
CviQI GTAC 2 cut(s) 496, 706
DdeI CTNAG 3 cut(s) 126, 594, 660
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 109
Eco147I AGGCCT 1 cut(s) 108
Eco72I CACGTG 1 cut(s) 143
Eco88I CYCGRG 1 cut(s) 465
Eco91I GGTNACC 1 cut(s) 221
EcoO65I GGTNACC 1 cut(s) 221
EcoRI GAATTC 1 cut(s) 576
EcoRII CCWGG 2 cut(s) 649, 667
EcoT14I CCWWGG 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 5 cut(s) 58, 320, 343, 353, 421
FaqI GGGAC 1 cut(s) 144
FatI CATG 5 cut(s) 54, 316, 339, 349, 417
Fnu4HI GCNGC 2 cut(s) 192, 453
FokI GGATG 1 cut(s) 271
Fsp4HI GCNGC 2 cut(s) 192, 453
GluI GCNGC 2 cut(s) 192, 453
GsuI CTGGAG 1 cut(s) 464
HaeIII GGCC 1 cut(s) 108
Hin1II CATG 5 cut(s) 58, 320, 343, 353, 421
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HinfI GANTC 1 cut(s) 633
HpaI GTTAAC 1 cut(s) 328
HphI GGTGA 2 cut(s) 197, 710
Hpy166II GTNNAC 3 cut(s) 328, 498, 528
Hpy188I TCNGA 2 cut(s) 49, 370
Hpy8I GTNNAC 3 cut(s) 328, 498, 528
HpyAV CCTTC 1 cut(s) 365
HpyCH4III ACNGT 5 cut(s) 154, 478, 502, 525, 683
HpyCH4IV ACGT 2 cut(s) 142, 290
HpyCH4V TGCA 5 cut(s) 16, 84, 137, 284, 646
HpyF10VI GCNNNNNNNGC 1 cut(s) 461
HpyF3I CTNAG 3 cut(s) 126, 594, 660
HpySE526I ACGT 2 cut(s) 142, 290
Hsp92II CATG 5 cut(s) 58, 320, 343, 353, 421
KspAI GTTAAC 1 cut(s) 328
Kzo9I GATC 1 cut(s) 250
LmnI GCTCC 2 cut(s) 95, 553
Lsp1109I GCAGC 2 cut(s) 203, 464
LweI GCATC 3 cut(s) 146, 293, 451
MaeII ACGT 2 cut(s) 142, 290
MaeIII GTNAC 3 cut(s) 88, 221, 358
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MboII GAAGA 1 cut(s) 766
MhlI GDGCHC 1 cut(s) 410
MluCI AATT 4 cut(s) 37, 100, 204, 576
MmeI TCCRAC 2 cut(s) 27, 357
MnlI CCTC 5 cut(s) 43, 121, 176, 235, 493
MseI TTAA 2 cut(s) 299, 327
MslI CAYNNNNRTG 1 cut(s) 398
MspR9I CCNGG 2 cut(s) 651, 669
MvaI CCWGG 2 cut(s) 651, 669
MwoI GCNNNNNNNGC 1 cut(s) 461
NdeII GATC 1 cut(s) 250
NlaIII CATG 5 cut(s) 58, 320, 343, 353, 421
NlaIV GGNNCC 1 cut(s) 409
NmeAIII GCCGAG 1 cut(s) 714
NspI RCATGY 1 cut(s) 343
OliI CACNNNNGTG 1 cut(s) 398
PaeI GCATGC 1 cut(s) 343
PaeR7I CTCGAG 1 cut(s) 465
PceI AGGCCT 1 cut(s) 108
PcsI WCGNNNNNNNCGW 1 cut(s) 571
PfeI GAWTC 1 cut(s) 633
Pfl23II CGTACG 1 cut(s) 705
PkrI GCNGC 2 cut(s) 193, 454
PmaCI CACGTG 1 cut(s) 143
PmlI CACGTG 1 cut(s) 143
Ppu21I YACGTR 1 cut(s) 143
Psp6I CCWGG 2 cut(s) 649, 667
PspCI CACGTG 1 cut(s) 143
PspEI GGTNACC 1 cut(s) 221
PspGI CCWGG 2 cut(s) 649, 667
PspLI CGTACG 1 cut(s) 705
PspN4I GGNNCC 1 cut(s) 409
PspXI VCTCGAGB 1 cut(s) 465
PstNI CAGNNNCTG 1 cut(s) 458
RsaI GTAC 2 cut(s) 497, 707
RsaNI GTAC 2 cut(s) 496, 706
RseI CAYNNNNRTG 1 cut(s) 398
SaqAI TTAA 2 cut(s) 299, 327
SatI GCNGC 2 cut(s) 192, 453
Sau3AI GATC 1 cut(s) 250
ScrFI CCNGG 2 cut(s) 651, 669
SduI GDGCHC 1 cut(s) 410
SfaNI GCATC 3 cut(s) 146, 293, 451
Sfr274I CTCGAG 1 cut(s) 465
SlaI CTCGAG 1 cut(s) 465
SmiMI CAYNNNNRTG 1 cut(s) 398
SmlI CTYRAG 2 cut(s) 344, 465
SmoI CTYRAG 2 cut(s) 344, 465
SphI GCATGC 1 cut(s) 343
Sse9I AATT 4 cut(s) 37, 100, 204, 576
SseBI AGGCCT 1 cut(s) 108
StuI AGGCCT 1 cut(s) 108
StyD4I CCNGG 2 cut(s) 649, 667
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 5 cut(s) 154, 478, 502, 525, 683
TaiI ACGT 2 cut(s) 145, 293
TaqI TCGA 3 cut(s) 169, 466, 565
TasI AATT 4 cut(s) 37, 100, 204, 576
TatI WGTACW 1 cut(s) 495
TfiI GAWTC 1 cut(s) 633
Tru1I TTAA 2 cut(s) 299, 327
Tru9I TTAA 2 cut(s) 299, 327
TscAI CASTG 1 cut(s) 535
TseI GCWGC 2 cut(s) 191, 452
TspDTI ATGAA 3 cut(s) 224, 246, 305
TspGWI ACGGA 2 cut(s) 79, 723
TspRI CASTG 1 cut(s) 535
XapI RAATTY 3 cut(s) 37, 204, 576
XceI RCATGY 1 cut(s) 343
XcmI CCANNNNNNNNNTGG 1 cut(s) 400
XhoI CTCGAG 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.