Rh6BG198600

Dehydrogenase reductase SDR family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0013243
Physical Location & Seq
Forward (+)
37372631 .. 37384005
11375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG198600.1

Sequence Viewer

Length: 1227 bp
ATGTTCTTCAAGAGGAAGAGTGGTAGTGGTACTAGATCTTATGACTGTGATAATGGAGGAGGAATGAGGAGCTCAAAGTCTTATGGAGATGTGAGTGGACTCATTACACAATACACATTGGCGGCACAGTTACTTCCTGCTGACCAAAGTAAAATACCCATGAGAGATCTTCCACTCAAAAAGGCTAAAGCCCCGAGCGATACTTGTTCGACTCTCAGACTTGAACTTCACATATCCCCTAGAGCGCTTACAATGTTTCTTCTCAAGGCATGGAGACAAACGGCTTTTGGTACATATGGGTACCTGAATTTCACCAAGTCTGGTTTCATAGAACATTCAAAGAATTTCAAGTCGGAGGACATGGAAATACGGAGAGATGGGAAAAACTGCATTGTAACAGGAGCTAATTCAGGCCTTGGTTTTGCGACTGCTGAGGGACTTGCATCGCGTGGGGCAACTGTGTATATGGTCTGTCGAAACAAGGAGAGAGGTGAAGCAGCACAATCTAAAATTCAATCTAAAACTGGTAACCAAAATGTTCATGTGGAGGTCTGCGATCTTTCATCTGTTAGTGATGTCAAATCATTTGCATCCACGTTTTCCTTAAAGAATGTGCCAGTTCATGTATTGGTTAACAATGCAGGCATGCTTGAGCATGATAGAGTTACCACATCAGAAGGGTTGGAGTTGAACTTTGCCACAAATGTGTTGGGCACCTATGCCATGACTGAACTGATGTTGCCATTGCTGGAGAAAGCAGCACCTGATGCTCGAGTTATTACTGTTTCCTCTGGTGGAATGTACACAGTTCCCTTGACCAAAGATTTACAGTTCACTGATGGCAACTTCAATGGGGTGGAGCAGTATGCTCGAAACAAGCGAGTTCAGGTGGCACTCACTGAGAAATGGGCTGAAATTAACAAAAACAAGGGGATTGGATTCTATTCTATGCACCCTGGTTGGGCTGAGACACCTGGGGTTGCCAACAGTTTGCCGAGTTTCTCTAAAGCTCTTTCGGGAAAACTTAGAACAAGCGATGAAGGTGCAGACACCATTATTTGGCTGGCTTTGCAGCCAAAAGAGAAATTGGTATCAGGTGCATTTTATTTTGATAGAGCAGAAGCACCTAAACACCTGATGTTTGCAGCTACCAGTGGCTCTCATGGTGTAATTGACTCGGTTATTGACAGTCTACGACGCTTATCTGGTATCTCTGCACAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

408

Amino Acids

44.4

Weight (kDa)

9.09

Isoelectric Point (pI)

36.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 128 - 327 1.3e-23 short chain dehydrogenase
KR PF08659 131 - 264 9.8e-09 KR domain
Epimerase PF01370 131 - 307 2.1e-08 NAD dependent epimerase/dehydratase family
adh_short_C2 PF13561 134 - 337 4.5e-17 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013243)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09750
fragaria_vesca FvH4_2g12970
malus_domestica MD10G1036200.v1.1
prunus_persica Prupe.8G041900_v2.0.a1 Prupe.8G041900_v2.0.a1 Prupe.8G041900_v2.0.a1
pyrus_communis pycom10g02460
rosa_chinensis RchiOBHm_Chr6g0274101
rosa_laevigata RLG00000013578
rosa_multiflora Rmu_ssc0000413.1_g000003
rosa_roxburghii Rroxscaffold_7G00194650
rosa_rugosa Rorug06G0078500 Rorug06G0078500
rosa_samantha Rh6AG194500 Rh6BG198600 Rh6CG198400
rosa_wichuraiana Rw0G007930 Rw6G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 300
AccB1I GGYRCC 2 cut(s) 300, 713
AccB7I CCANNNNNTGG 1 cut(s) 1059
AccI GTMKAC 1 cut(s) 1192
AccII CGCG 1 cut(s) 448
AciI CCGC 1 cut(s) 122
AcsI RAATTY 3 cut(s) 307, 343, 510
AfaI GTAC 4 cut(s) 31, 292, 302, 803
AfeI AGCGCT 1 cut(s) 246
AfiI CCNNNNNNNGG 2 cut(s) 961, 1059
AgsI TTSAA 7 cut(s) 10, 224, 339, 349, 515, 691, 850
AjnI CCWGG 2 cut(s) 955, 973
AjuI GAANNNNNNNTTGG 2 cut(s) 308, 340
AleI CACNNNNGTG 1 cut(s) 704
AluBI AGCT 4 cut(s) 72, 404, 1010, 1148
AluI AGCT 4 cut(s) 72, 404, 1010, 1148
Alw21I GWGCWC 1 cut(s) 74
Alw26I GTCTC 2 cut(s) 268, 962
AlwNI CAGNNNCTG 1 cut(s) 764
Ama87I CYCGRG 2 cut(s) 193, 771
Aor51HI AGCGCT 1 cut(s) 246
AoxI GGCC 1 cut(s) 412
ApeKI GCWGC 4 cut(s) 497, 758, 1072, 1145
ApoI RAATTY 3 cut(s) 307, 343, 510
Asp718I GGTACC 1 cut(s) 300
AspLEI GCGC 1 cut(s) 247
AsuHPI GGTGA 2 cut(s) 304, 503
AvaI CYCGRG 2 cut(s) 193, 771
BaeGI GKGCMC 1 cut(s) 716
BanI GGYRCC 2 cut(s) 300, 713
BanII GRGCYC 1 cut(s) 74
Bbv12I GWGCWC 1 cut(s) 74
BbvCI CCTCAGC 1 cut(s) 432
BbvI GCAGC 4 cut(s) 509, 770, 1084, 1157
BccI CCATC 2 cut(s) 371, 833
BceAI ACGGC 1 cut(s) 297
BcgI CGANNNNNNTGC 4 cut(s) 851, 885, 1025, 1059
BciT130I CCWGG 2 cut(s) 957, 975
BcoDI GTCTC 2 cut(s) 268, 962
BfaI CTAG 2 cut(s) 33, 240
BfoI RGCGCY 1 cut(s) 248
BglII AGATCT 2 cut(s) 35, 166
BisI GCNGC 5 cut(s) 123, 498, 759, 1073, 1146
BlsI GCNGC 5 cut(s) 124, 499, 760, 1074, 1147
Bme1390I CCNGG 2 cut(s) 957, 975
BmeT110I CYCGRG 2 cut(s) 193, 771
BmiI GGNNCC 2 cut(s) 302, 715
BmrFI CCNGG 2 cut(s) 957, 975
BmsI GCATC 3 cut(s) 452, 599, 757
BpmI CTGGAG 1 cut(s) 770
Bpu10I CCTNAGC 1 cut(s) 432
BpuEI CTTGAG 2 cut(s) 248, 671
BsaJI CCNNGG 3 cut(s) 415, 955, 974
Bsc4I CCNNNNNNNGG 2 cut(s) 961, 1059
Bse1I ACTGG 3 cut(s) 529, 617, 1152
Bse3DI GCAATG 1 cut(s) 743
BseBI CCWGG 2 cut(s) 957, 975
BseDI CCNNGG 3 cut(s) 415, 955, 974
BseGI GGATG 1 cut(s) 590
BseLI CCNNNNNNNGG 2 cut(s) 961, 1059
BseMI GCAATG 1 cut(s) 743
BseMII CTCAG 4 cut(s) 229, 423, 891, 957
BseNI ACTGG 3 cut(s) 529, 617, 1152
BseRI GAGGAG 2 cut(s) 72, 82
BseSI GKGCMC 1 cut(s) 716
BseXI GCAGC 4 cut(s) 509, 770, 1084, 1157
BsgI GTGCAG 2 cut(s) 1065, 1200
Bsh1236I CGCG 1 cut(s) 448
BshFI GGCC 1 cut(s) 414
BshNI GGYRCC 2 cut(s) 300, 713
BsiHKAI GWGCWC 1 cut(s) 74
BsiHKCI CYCGRG 2 cut(s) 193, 771
BslFI GGGAC 1 cut(s) 450
BslI CCNNNNNNNGG 2 cut(s) 961, 1059
BsmAI GTCTC 2 cut(s) 268, 962
BsmFI GGGAC 1 cut(s) 450
BsnI GGCC 1 cut(s) 414
BsoBI CYCGRG 2 cut(s) 193, 771
Bsp1286I GDGCHC 2 cut(s) 74, 716
Bsp1407I TGTACA 1 cut(s) 801
Bsp143I GATC 3 cut(s) 35, 166, 556
BspACI CCGC 1 cut(s) 122
BspANI GGCC 1 cut(s) 414
BspCNI CTCAG 4 cut(s) 228, 424, 892, 958
BspFNI CGCG 1 cut(s) 448
BspLI GGNNCC 2 cut(s) 302, 715
BspT107I GGYRCC 2 cut(s) 300, 713
BsrDI GCAATG 1 cut(s) 743
BsrGI TGTACA 1 cut(s) 801
BsrI ACTGG 3 cut(s) 529, 617, 1152
BssECI CCNNGG 3 cut(s) 415, 955, 974
BssMI GATC 3 cut(s) 35, 166, 556
BssT1I CCWWGG 1 cut(s) 415
Bst2UI CCWGG 2 cut(s) 957, 975
Bst4CI ACNGT 8 cut(s) 47, 129, 460, 784, 808, 831, 989, 1190
Bst6I CTCTTC 1 cut(s) 11
BstAPI GCANNNNNTGC 1 cut(s) 767
BstAUI TGTACA 1 cut(s) 801
BstC8I GCNNGC 3 cut(s) 643, 647, 1065
BstDEI CTNAG 5 cut(s) 215, 432, 900, 966, 1025
BstEII GGTNACC 1 cut(s) 527
BstF5I GGATG 1 cut(s) 590
BstFNI CGCG 1 cut(s) 448
BstH2I RGCGCY 1 cut(s) 248
BstHHI GCGC 1 cut(s) 247
BstKTI GATC 3 cut(s) 38, 169, 559
BstMAI GTCTC 2 cut(s) 268, 962
BstMBI GATC 3 cut(s) 35, 166, 556
BstMWI GCNNNNNNNGC 2 cut(s) 767, 1069
BstNI CCWGG 2 cut(s) 957, 975
BstNSI RCATGY 1 cut(s) 649
BstPI GGTNACC 1 cut(s) 527
BstSCI CCNGG 2 cut(s) 955, 973
BstSLI GKGCMC 1 cut(s) 716
BstUI CGCG 1 cut(s) 448
BstV1I GCAGC 4 cut(s) 509, 770, 1084, 1157
BstX2I RGATCY 2 cut(s) 35, 166
BstYI RGATCY 2 cut(s) 35, 166
BsuRI GGCC 1 cut(s) 414
BtgZI GCGATG 2 cut(s) 429, 1050
BtsCI GGATG 1 cut(s) 590
BtsIMutI CAGTG 3 cut(s) 834, 897, 1159
Cac8I GCNNGC 3 cut(s) 643, 647, 1065
CaiI CAGNNNCTG 1 cut(s) 764
CfoI GCGC 1 cut(s) 247
CseI GACGC 1 cut(s) 1206
Csp6I GTAC 4 cut(s) 30, 291, 301, 802
CviAII CATG 9 cut(s) 160, 270, 361, 542, 623, 646, 656, 724, 1163
CviQI GTAC 4 cut(s) 30, 291, 301, 802
DdeI CTNAG 5 cut(s) 215, 432, 900, 966, 1025
DpnI GATC 3 cut(s) 37, 168, 558
DpnII GATC 3 cut(s) 35, 166, 556
Eam1104I CTCTTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 11
Ecl136II GAGCTC 1 cut(s) 72
Eco130I CCWWGG 1 cut(s) 415
Eco147I AGGCCT 1 cut(s) 414
Eco24I GRGCYC 1 cut(s) 74
Eco47III AGCGCT 1 cut(s) 246
Eco53kI GAGCTC 1 cut(s) 72
Eco88I CYCGRG 2 cut(s) 193, 771
Eco91I GGTNACC 1 cut(s) 527
EcoICRI GAGCTC 1 cut(s) 72
EcoO65I GGTNACC 1 cut(s) 527
EcoRII CCWGG 2 cut(s) 955, 973
EcoT14I CCWWGG 1 cut(s) 415
EcoT38I GRGCYC 1 cut(s) 74
ErhI CCWWGG 1 cut(s) 415
FaeI CATG 9 cut(s) 163, 273, 364, 545, 626, 649, 659, 727, 1166
FaqI GGGAC 1 cut(s) 450
FatI CATG 9 cut(s) 159, 269, 360, 541, 622, 645, 655, 723, 1162
FauNDI CATATG 1 cut(s) 295
FblI GTMKAC 1 cut(s) 1192
Fnu4HI GCNGC 5 cut(s) 123, 498, 759, 1073, 1146
FokI GGATG 1 cut(s) 577
FriOI GRGCYC 1 cut(s) 74
Fsp4HI GCNGC 5 cut(s) 123, 498, 759, 1073, 1146
FspBI CTAG 2 cut(s) 33, 240
GlaI GCGC 1 cut(s) 246
GluI GCNGC 5 cut(s) 123, 498, 759, 1073, 1146
GsuI CTGGAG 1 cut(s) 770
HaeII RGCGCY 1 cut(s) 248
HaeIII GGCC 1 cut(s) 414
HgaI GACGC 1 cut(s) 1206
HhaI GCGC 1 cut(s) 247
Hin1II CATG 9 cut(s) 163, 273, 364, 545, 626, 649, 659, 727, 1166
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HincII GTYRAC 1 cut(s) 634
HindII GTYRAC 1 cut(s) 634
HinfI GANTC 4 cut(s) 99, 211, 939, 1175
HpaI GTTAAC 1 cut(s) 634
HphI GGTGA 2 cut(s) 304, 503
Hpy166II GTNNAC 5 cut(s) 98, 634, 804, 834, 1193
Hpy188I TCNGA 3 cut(s) 218, 355, 676
Hpy188III TCNNGA 2 cut(s) 10, 1017
Hpy8I GTNNAC 5 cut(s) 98, 634, 804, 834, 1193
Hpy99I CGWCG 1 cut(s) 1200
HpyAV CCTTC 2 cut(s) 671, 1034
HpyCH4III ACNGT 8 cut(s) 47, 129, 460, 784, 808, 831, 989, 1190
HpyCH4IV ACGT 1 cut(s) 596
HpyF10VI GCNNNNNNNGC 2 cut(s) 767, 1069
HpyF3I CTNAG 5 cut(s) 215, 432, 900, 966, 1025
HpySE526I ACGT 1 cut(s) 596
Hsp92II CATG 9 cut(s) 163, 273, 364, 545, 626, 649, 659, 727, 1166
HspAI GCGC 1 cut(s) 245
KpnI GGTACC 1 cut(s) 304
KspAI GTTAAC 1 cut(s) 634
Kzo9I GATC 3 cut(s) 35, 166, 556
LmnI GCTCC 3 cut(s) 69, 401, 859
Lsp1109I GCAGC 4 cut(s) 509, 770, 1084, 1157
LweI GCATC 3 cut(s) 452, 599, 757
MaeI CTAG 2 cut(s) 33, 240
MaeII ACGT 1 cut(s) 596
MaeIII GTNAC 4 cut(s) 129, 394, 527, 664
MalI GATC 3 cut(s) 37, 168, 558
MboI GATC 3 cut(s) 35, 166, 556
MboII GAAGA 3 cut(s) 28, 161, 251
MflI RGATCY 2 cut(s) 35, 166
MhlI GDGCHC 2 cut(s) 74, 716
MluCI AATT 7 cut(s) 307, 343, 406, 510, 915, 1085, 1170
MlyI GAGTC 3 cut(s) 93, 205, 1169
MmeI TCCRAC 2 cut(s) 333, 663
MnlI CCTC 9 cut(s) 6, 50, 53, 60, 349, 427, 482, 541, 799
MseI TTAA 3 cut(s) 605, 633, 918
MslI CAYNNNNRTG 1 cut(s) 704
MspR9I CCNGG 2 cut(s) 957, 975
MvaI CCWGG 2 cut(s) 957, 975
MvnI CGCG 1 cut(s) 448
MwoI GCNNNNNNNGC 2 cut(s) 767, 1069
NdeI CATATG 1 cut(s) 295
NdeII GATC 3 cut(s) 35, 166, 556
NlaIII CATG 9 cut(s) 163, 273, 364, 545, 626, 649, 659, 727, 1166
NlaIV GGNNCC 2 cut(s) 302, 715
NmeAIII GCCGAG 1 cut(s) 1020
NspI RCATGY 1 cut(s) 649
OliI CACNNNNGTG 1 cut(s) 704
PaeI GCATGC 1 cut(s) 649
PaeR7I CTCGAG 1 cut(s) 771
PceI AGGCCT 1 cut(s) 414
PcsI WCGNNNNNNNCGW 1 cut(s) 877
PfeI GAWTC 1 cut(s) 939
PflMI CCANNNNNTGG 1 cut(s) 1059
PkrI GCNGC 5 cut(s) 124, 499, 760, 1074, 1147
PleI GAGTC 3 cut(s) 93, 205, 1169
PpsI GAGTC 3 cut(s) 93, 205, 1169
Psp124BI GAGCTC 1 cut(s) 74
Psp6I CCWGG 2 cut(s) 955, 973
PspEI GGTNACC 1 cut(s) 527
PspGI CCWGG 2 cut(s) 955, 973
PspN4I GGNNCC 2 cut(s) 302, 715
PspXI VCTCGAGB 1 cut(s) 771
PstNI CAGNNNCTG 1 cut(s) 764
PsuI RGATCY 2 cut(s) 35, 166
RsaI GTAC 4 cut(s) 31, 292, 302, 803
RsaNI GTAC 4 cut(s) 30, 291, 301, 802
RseI CAYNNNNRTG 1 cut(s) 704
SacI GAGCTC 1 cut(s) 74
SaqAI TTAA 3 cut(s) 605, 633, 918
SatI GCNGC 5 cut(s) 123, 498, 759, 1073, 1146
Sau3AI GATC 3 cut(s) 35, 166, 556
SchI GAGTC 3 cut(s) 93, 205, 1169
ScrFI CCNGG 2 cut(s) 957, 975
SduI GDGCHC 2 cut(s) 74, 716
SfaNI GCATC 3 cut(s) 452, 599, 757
Sfr274I CTCGAG 1 cut(s) 771
SlaI CTCGAG 1 cut(s) 771
SmiMI CAYNNNNRTG 1 cut(s) 704
SmlI CTYRAG 3 cut(s) 263, 650, 771
SmoI CTYRAG 3 cut(s) 263, 650, 771
SphI GCATGC 1 cut(s) 649
Sse9I AATT 7 cut(s) 307, 343, 406, 510, 915, 1085, 1170
SseBI AGGCCT 1 cut(s) 414
SsiI CCGC 1 cut(s) 122
SspMI CTAG 2 cut(s) 33, 240
SstI GAGCTC 1 cut(s) 74
StuI AGGCCT 1 cut(s) 414
StyD4I CCNGG 2 cut(s) 955, 973
StyI CCWWGG 1 cut(s) 415
TaaI ACNGT 8 cut(s) 47, 129, 460, 784, 808, 831, 989, 1190
TaiI ACGT 1 cut(s) 599
TaqI TCGA 4 cut(s) 209, 475, 772, 871
TasI AATT 7 cut(s) 307, 343, 406, 510, 915, 1085, 1170
TatI WGTACW 1 cut(s) 801
TauI GCSGC 1 cut(s) 125
TfiI GAWTC 1 cut(s) 939
Tru1I TTAA 3 cut(s) 605, 633, 918
Tru9I TTAA 3 cut(s) 605, 633, 918
TscAI CASTG 3 cut(s) 841, 904, 1159
TseI GCWGC 4 cut(s) 497, 758, 1072, 1145
TspDTI ATGAA 5 cut(s) 316, 530, 552, 611, 1053
TspGWI ACGGA 1 cut(s) 385
TspRI CASTG 3 cut(s) 841, 904, 1159
Van91I CCANNNNNTGG 1 cut(s) 1059
XapI RAATTY 3 cut(s) 307, 343, 510
XceI RCATGY 1 cut(s) 649
XcmI CCANNNNNNNNNTGG 2 cut(s) 706, 1060
XhoI CTCGAG 1 cut(s) 771
XmiI GTMKAC 1 cut(s) 1192
XspI CTAG 2 cut(s) 33, 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.